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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, Riverside

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51.

Research article   Open Access Highly Accessed

The effects of second-hand smoke on biological processes important in atherogenesis

Hongwei Yuan, Lina S Wong, Monideepa Bhattacharya, Chongze Ma, Mohammed Zafarani, Min Yao, Matthias Schneider, Robert E Pitas, Manuela Martins-Green BMC Cardiovascular Disorders 2007, 7:1 (8 January 2007)

Abstract | Full text | PDF | PubMed

52.

Research article   Open Access

Bilateral enucleation alters gene expression and intraneocortical connections in the mouse

Catherine A Dye, Charles W Abbott, Kelly J Huffman Neural Development 2012, 7:5 (30 January 2012)

Abstract | Full text | PDF | PubMed

53.

Software   Open Access

Composition Profiler: a tool for discovery and visualization of amino acid composition differences

Vladimir Vacic, Vladimir N Uversky, A Keith Dunker, Stefano Lonardi BMC Bioinformatics 2007, 8:211 (19 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

54.

Research article   Open Access

Mechanism of PhosphoThreonine/Serine Recognition and Specificity for Modular Domains from All-atom Molecular Dynamics

Yu-ming M Huang, Chia-en A Chang BMC Biophysics 2011, 4:12 (25 May 2011)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Mechanism of phosphothreonine/serine recognition and specificity is elucidated for three well-known phosphopeptide-binding domains important for signal transduction: BRCT repeats, WW domain and forkhead-associated domain (FHA) with the use of molecular dynamics simulations.

55.

Research   Open Access

Ixodes scapularis saliva mitigates inflammatory cytokine secretion during Anaplasma phagocytophilum stimulation of immune cells

Gang Chen, Maiara S Severo, Mohammad Sohail, Olivia S Sakhon, Stephen K Wikel, Michail Kotsyfakis, Joao HF Pedra Parasites & Vectors 2012, 5:229 (10 October 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This study demonstrates that Ixodes scapularis saliva inhibits Toll-like (TLR) and Nod-like receptor (NLR) induced-inflammatory cytokine secretion by mouse and human immune cells. I. scapularis saliva also mitigates the cytokine response by macrophages during challenge with Anaplasma phagocytophilum. Image: Anaplasma phagocytophilum engulfed by macrophages [membranes (green), A. phagocytophilum (red), and nuclei (blue)]. Magnification is 600x4=2400.

56.

Research article   Open Access

High content live cell imaging for the discovery of new antimalarial marine natural products

Serena Cervantes, Paige E Stout, Jacques Prudhomme, Sebastian Engel, Matthew Bruton, Michael Cervantes, David Carter, Young Tae-Chang, Mark E Hay, William Aalbersberg, Julia Kubanek, Karine G Le Roch BMC Infectious Diseases 2012, 12:1 (3 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

57.

Research   Open Access

Composition and hydrothermal pretreatment and enzymatic saccharification performance of grasses and legumes from a mixed-species prairie

Jaclyn D DeMartini, Charles E Wyman Biotechnology for Biofuels 2011, 4:52 (15 November 2011)

Abstract | Full text | PDF | PubMed

58.

Methodology article   Open Access

Generalized linear mixed model for segregation distortion analysis

Haimao Zhan, Shizhong Xu BMC Genetics 2011, 12:97 (11 November 2011)

Abstract | Full text | PDF | PubMed

59.

Research article   Open Access

Nuclear Receptor HNF4α Binding Sequences are Widespread in Alu Repeats

Eugene Bolotin, Karthikeyani Chellappa, Wendy Hwang-Verslues, Jake M Schnabl, Chuhu Yang, Frances M Sladek BMC Genomics 2011, 12:560 (15 November 2011)

Abstract | Full text | PDF | PubMed

60.

Research article   Open Access Highly Accessed

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis

Hailing Jin, Vladimir Vacic, Thomas Girke, Stefano Lonardi, Jian-Kang Zhu BMC Molecular Biology 2008, 9:6 (14 January 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

61.

Methodology article   Open Access

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)

Kevin Stoffel, Hans van Leeuwen, Alexander Kozik, David Caldwell, Hamid Ashrafi, Xinping Cui, Xiaoping Tan, Theresa Hill, Sebastian Reyes-Chin-Wo, Maria-Jose Truco, Richard W Michelmore, Allen Van Deynze BMC Genomics 2012, 13:185 (14 May 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

62.

Research   Open Access

Enhanced presentation of MHC class Ia, Ib and class II-restricted peptides encapsulated in biodegradable nanoparticles: a promising strategy for tumor immunotherapy

Wenxue Ma, Trevor Smith, Vladimir Bogin, Yu Zhang, Cengiz Ozkan, Mihri Ozkan, Melanie Hayden, Stephanie Schroter, Ewa Carrier, Davorka Messmer, Vipin Kumar, Boris Minev Journal of Translational Medicine 2011, 9:34 (31 March 2011)

Abstract | Full text | PDF | PubMed

63.

Research article   Open Access

New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria

Panagiotis Ioannidis, Julie Hotopp, Panagiotis Sapountzis, Stefanos Siozios, Georgios Tsiamis, Seth R Bordenstein, Laura Baldo, John H Werren, Kostas Bourtzis BMC Genomics 2007, 8:182 (20 June 2007)

Abstract | Full text | PDF | PubMed

64.

Research article   Open Access

Phylogeny and adaptive evolution of the brain-development gene microcephalin (MCPH1) in cetaceans

Michael R McGowen, Stephen H Montgomery, Clay Clark, John Gatesy BMC Evolutionary Biology 2011, 11:98 (14 April 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

65.

Research   Open Access

Peptidylarginine deiminase (PAD) is a mouse cortical granule protein that plays a role in preimplantation embryonic development

Min Liu, Andrea Oh, Patricia Calarco, Michiyuki Yamada, Scott A Coonrod, Prue Talbot Reproductive Biology and Endocrinology 2005, 3:42 (1 September 2005)

Abstract | Full text | PDF | PubMed

66.

Research article   Open Access Highly Accessed

Beta-arrestin inhibits CAMKKbeta-dependent AMPK activation downstream of protease-activated-receptor-2

Ping Wang, Yong Jiang, Yinsheng Wang, John Y Shyy, Kathryn A DeFea BMC Biochemistry 2010, 11:36 (21 September 2010)

Abstract | Full text | PDF | PubMed

67.

Research article   Open Access

Fast empirical Bayesian LASSO for multiple quantitative trait locus mapping

Xiaodong Cai, Anhui Huang, Shizhong Xu BMC Bioinformatics 2011, 12:211 (26 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

68.

Software   Open Access Highly Accessed

Exploratory analysis of genomic segmentations with Segtools

Orion J Buske, Michael M Hoffman, Nadia Ponts, Karine G Le Roch, William Noble BMC Bioinformatics 2011, 12:415 (26 October 2011)

Abstract | Full text | PDF | PubMed

69.

Research article   Open Access Highly Accessed

Effects of "second-hand" smoke on structure and function of fibroblasts, cells that are critical for tissue repair and remodeling

Lina S Wong, Harry Green, Jo Feugate, Madhav Yadav, Eugene A Nothnagel, Manuela Martins-Green BMC Cell Biology 2004, 5:13 (5 April 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

70.

Research   Open Access

Pyrazine derivatives in cigarette smoke inhibit hamster oviductal functioning

Karen Riveles, Ryan Roza, Janet Arey, Prue Talbot Reproductive Biology and Endocrinology 2004, 2:23 (12 May 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

71.

Database   Open Access Highly Accessed

Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork

Arnis Druka, Ilze Druka, Arthur G Centeno, Hongqiang Li, Zhaohui Sun, William TB Thomas, Nicola Bonar, Brian J Steffenson, Steven E Ullrich, Andris Kleinhofs, Roger P Wise, Timothy J Close, Elena Potokina, Zewei Luo, Carola Wagner, Günther F Schweizer, David F Marshall, Michael J Kearsey, Robert W Williams, Robbie Waugh BMC Genetics 2008, 9:73 (18 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

72.

Research article   Open Access Highly Accessed

Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice

Thomas Thiel, Andreas Graner, Robbie Waugh, Ivo Grosse, Timothy J Close, Nils Stein BMC Evolutionary Biology 2009, 9:209 (22 August 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

73.

Research article   Open Access Highly Accessed

Differential biologic effects of CPD and 6-4PP UV-induced DNA damage on the induction of apoptosis and cell-cycle arrest

Hsin-Lung Lo, Satoshi Nakajima, Lisa Ma, Barbara Walter, Akira Yasui, Douglas W Ethell, Laurie B Owen BMC Cancer 2005, 5:135 (19 October 2005)

Abstract | Full text | PDF | PubMed

74.

Research article   Open Access

Development and mapping of DArT markers within the Festuca - Lolium complex

David Kopecký, Jan Bartoš, Adam J Lukaszewski, James H Baird, Vladimír Černoch, Roland Kölliker, Odd Rognli, Helene Blois, Vanessa Caig, Thomas Lübberstedt, Bruno Studer, Paul Shaw, Jaroslav Doležel, Andrzej Kilian BMC Genomics 2009, 10:473 (15 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

75.

Research   Open Access

DNA binding activities of the Herves transposase from the mosquito Anopheles gambiae

Amandeep S Kahlon, Robert H Hice, David A O'Brochta, Peter W Atkinson Mobile DNA 2011, 2:9 (20 June 2011)

Abstract | Full text | PDF | PubMed

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