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	1.	Research Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships Ian H McHardy, Maryam Goudarzi, Maomeng Tong, Paul M Ruegger, Emma Schwager, John R Weger, Thomas G Graeber, Justin L Sonnenburg, Steve Horvath, Curtis Huttenhower, Dermot PB McGovern, Albert J Fornace, James Borneman, Jonathan Braun Microbiome 2013, 1:17 (5 June 2013) Abstract \| Provisional PDF
	2.	Research article 5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction Joseph M Dhahbi, Stephen R Spindler, Hani Atamna, Amy Yamakawa, Dario Boffelli, Patricia Mote, David IK Martin BMC Genomics 2013, 14:298 (2 May 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Methods Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana Thanh Theresa Dinh, Michael O’Leary, So Youn Won, Shengben Li, Lorena Arroyo, Xigang Liu, Andrew Defries, Binglian Zheng, Sean R Cutler, Xuemei Chen Silence 2013, 4:1 (5 April 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research article 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea Chi Keung Cheng, Chun Hang Au, Sarah K Wilke, Jason E Stajich, Miriam E Zolan, Patricia J Pukkila, Hoi Shan Kwan BMC Genomics 2013, 14:195 (20 March 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research article *Novel core promoter elements in the oomycete pathogen Phytophthora infestans* and their influence on expression detected by genome-wide analysis** Sourav Roy, Laetitia Poidevin, Tao Jiang, Howard S Judelson BMC Genomics 2013, 14:106 (16 February 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Methodology article Empirical Bayesian LASSO-logistic regression for multiple binary trait locus mapping Anhui Huang, Shizhong Xu, Xiaodong Cai BMC Genetics 2013, 14:5 (15 February 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Original research Agonist and antagonist binding to the nuclear vitamin D receptor: dynamics, mutation effects and functional implications Sepideh Yaghmaei, Christopher Roberts, Rizi Ai, Mathew T Mizwicki, Chia-en A Chang In Silico Pharmacology 2013, 1:2 (12 February 2013) Abstract \| Full text \| PDF
	8.	Research article Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes Yujun Han, Shanshan Qin, Susan R Wessler BMC Genomics 2013, 14:71 (31 January 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Research article Molecular decay of enamel matrix protein genes in turtles and other edentulous amniotes Robert W Meredith, John Gatesy, Mark S Springer BMC Evolutionary Biology 2013, 13:20 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Proceedings A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree En-Yu Lai, Wei-Bung Wang, Tao Jiang, Kun-Pin Wu BMC Bioinformatics 2012, 13(Suppl 17):S19 (13 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	11.	Proceedings A fast and accurate algorithm for single individual haplotyping Minzhu Xie, Jianxin Wang, Tao Jiang BMC Systems Biology 2012, 6(Suppl 2):S8 (12 December 2012) Abstract \| Full text \| PDF \| PubMed
	12.	Research article *Analyses of expressed sequence tags in Neurospora* reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi** Kristiina Nygren, Andreas Wallberg, Nicklas Samils, Jason E Stajich, Jeffrey P Townsend, Magnus Karlsson, Hanna Johannesson BMC Evolutionary Biology 2012, 12:229 (27 November 2012) Abstract \| Full text \| PDF \| PubMed
	13.	Research article *A reference genetic map of C. clementina* hort. ex Tan.; citrus evolution inferences from comparative mapping** Patrick Ollitrault, Javier Terol, Chunxian Chen, Claire T Federici, Samia Lotfy, Isabelle Hippolyte, Frédérique Ollitrault, Aurélie Bérard, Aurélie Chauveau, Jose Cuenca, Gilles Costantino, Yildiz Kacar, Lisa Mu, Andres Garcia-Lor, Yann Froelicher, Pablo Aleza, Anne Boland, Claire Billot, Luis Navarro, François Luro, Mikeal L Roose, Frederick G Gmitter, Manuel Talon, Dominique Brunel BMC Genomics 2012, 13:593 (5 November 2012) Abstract \| Full text \| PDF \| PubMed
	14.	Research Ixodes scapularis saliva mitigates inflammatory cytokine secretion during Anaplasma phagocytophilum stimulation of immune cells Gang Chen, Maiara S Severo, Mohammad Sohail, Olivia S Sakhon, Stephen K Wikel, Michail Kotsyfakis, Joao HF Pedra Parasites & Vectors 2012, 5:229 (10 October 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary This study demonstrates that Ixodes scapularis saliva inhibits Toll-like (TLR) and Nod-like receptor (NLR) induced-inflammatory cytokine secretion by mouse and human immune cells. I. scapularis saliva also mitigates the cytokine response by macrophages during challenge with Anaplasma phagocytophilum. Image: Anaplasma phagocytophilum engulfed by macrophages [membranes (green), A. phagocytophilum (red), and nuclei (blue)]. Magnification is 600x4=2400.
	15.	Research Separating metagenomic short reads into genomes via clustering Olga Tanaseichuk, James Borneman, Tao Jiang Algorithms for Molecular Biology 2012, 7:27 (26 September 2012) Abstract \| Full text \| PDF \| PubMed
	16.	Research article High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice Blanca E Barrera-Figueroa, Lei Gao, Zhigang Wu, Xuefeng Zhou, Jianhua Zhu, Hailing Jin, Renyi Liu, Jian-Kang Zhu BMC Plant Biology 2012, 12:132 (3 August 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	17.	Research *Rapid selection and identification of Miscanthus* genotypes with enhanced glucan and xylan yields from hydrothermal pretreatment followed by enzymatic hydrolysis** Taiying Zhang, Charles E Wyman, Katrin Jakob, Bin Yang Biotechnology for Biofuels 2012, 5:56 (3 August 2012) Abstract \| Full text \| PDF \| PubMed
	18.	Research article *Leaf morphology in Cowpea [Vigna unguiculata* (L.) Walp]: QTL analysis, physical mapping and identifying a candidate gene using synteny with model legume species** Marti Pottorff, Jeffrey D Ehlers, Christian Fatokun, Philip A Roberts, Timothy J Close BMC Genomics 2012, 13:234 (12 June 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Methods Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana So Youn Won, Shengben Li, Binglian Zheng, Yuanyuan Zhao, Dongming Li, Xin Zhao, Huilan Yi, Lei Gao, Thanh Theresa Dinh, Xuemei Chen Silence 2012, 3:6 (7 June 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A luciferase-based reporter system, LUCH, is used to screen for bidirectional mutants that enhance or suppress transcriptional gene silencing, elucidating the mechanisms of DNA methylation and demethylation.
	20.	Methodology article *Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)* Kevin Stoffel, Hans van Leeuwen, Alexander Kozik, David Caldwell, Hamid Ashrafi, Xinping Cui, Xiaoping Tan, Theresa Hill, Sebastian Reyes-Chin-Wo, Maria-Jose Truco, Richard W Michelmore, Allen Van Deynze BMC Genomics 2012, 13:185 (14 May 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21.	Review Role of C-C chemokine receptor type 7 and its ligands during neuroinflammation Shahani Noor, Emma H Wilson Journal of Neuroinflammation 2012, 9:77 (25 April 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Software The Transcription Factor Encyclopedia Dimas Yusuf, Stefanie L Butland, Magdalena I Swanson, Eugene Bolotin, Amy Ticoll, Warren A Cheung, Xiao Cindy Zhang, Christopher TD Dickman, Debra L Fulton, Jonathan S Lim, Jake M Schnabl, Oscar HP Ramos, Mireille Vasseur-Cognet, Charles N de Leeuw, Elizabeth M Simpson, Gerhart U Ryffel, Eric W-F Lam, Ralf Kist, Miranda SC Wilson, Raquel Marco-Ferreres, Jan J Brosens, Leonardo L Beccari, Paola Bovolenta, Bérénice A Benayoun, Lara J Monteiro, Helma DC Schwenen, Lars Grontved, Elizabeth Wederell, Susanne Mandrup, Reiner A Veitia et al. Genome Biology 2012, 13:R24 (29 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary A high quality compendium of transcription factor data that allows researchers to add new data via a peer-review system
	23.	Research Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function Xiaoming Zhang, Jing Xia, Yifan E Lii, Blanca E Barrera-Figueroa, Xuefeng Zhou, Shang Gao, Lu Lu, Dongdong Niu, Zheng Chen, Christy Leung, Timothy Wong, Huiming Zhang, Jianhua Guo, Yi Li, Renyi Liu, Wanqi Liang, Jian-Kang Zhu, Weixiong Zhang, Hailing Jin Genome Biology 2012, 13:R20 (22 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary In Arabidopsis and rice, natural antisense transcripts are processed into siRNAs by DCL1 and DCL3
	24.	Research *Ultrastructure of book gill development in embryos and first instars of the horseshoe crab Limulus polyphemus* L. (Chelicerata, Xiphosura)** Roger D Farley Frontiers in Zoology 2012, 9:4 (21 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25.	Research article M cell targeting by a Claudin 4 targeting peptide can enhance mucosal IgA responses David D Lo, Jun Ling, A Holly Eckelhoefer BMC Biotechnology 2012, 12:7 (13 March 2012) Abstract \| Full text \| PDF \| PubMed