1.
The unique evolution of the programmed cell death 4 protein in plants
Shijun
Cheng,
Renyi
Liu,
Daniel
R
Gallie
BMC Evolutionary Biology 2013, 13 :199 (16 September 2013)
Abstract | Provisional PDF
| PubMed
2.
Cytological and molecular characterization of three gametoclones of Citrus clementina
Maria
Germana,
Pablo
Aleza,
Esther
Carrera,
Chunxian
Chen,
Benedetta
Chiancone,
Gilles
Costantino,
Dominique
Dambier,
Xiuxin
Deng,
Claire
T
Federici,
Yann
Froelicher,
Wenwu
Guo,
Victoria
Ibáñez,
José
Juárez,
Kevin
Kwok,
François
Luro,
Marcos
A
Machado,
Miguel
Naranjo,
Luis
Navarro,
Patrick
Ollitrault,
Gabino
Ríos,
Mikeal
L
Roose,
Manuel
Talon,
Qiang
Xu,
Fred
G
Gmitter
BMC Plant Biology 2013, 13 :129 (10 September 2013)
Abstract | Full text | PDF | PubMed
3.
Bacterial artificial chromosome derived simian varicella virus is pathogenic in vivo
Christine
Meyer,
Jesse
Dewane,
Kristen
Haberthur,
Flora
Engelmann,
Nicole
Arnold,
Wayne
Gray,
Ilhem
Messaoudi
Virology Journal 2013, 10 :278 (8 September 2013)
Abstract | Full text | PDF | PubMed
4.
Thermo-mechanical coupling and size effects in micro and nano resonators
Sandeep
Kumar,
Tarek
Alam,
Aman
Haque
Micro and Nano Systems Letters 2013, 1 :2 (6 August 2013)
Abstract | Full text | PDF
5.
The fate of lignin during hydrothermal pretreatment
Heather
L
Trajano,
Nancy
L
Engle,
Marcus
Foston,
Arthur
J
Ragauskas,
Timothy
J
Tschaplinski,
Charles
E
Wyman
Biotechnology for Biofuels 2013, 6 :110 (1 August 2013)
Abstract | Full text | PDF | PubMed
6.
TNFα and IL-17 cooperatively stimulate glucose metabolism and growth factor production in human colorectal cancer cells
Daniel
S
Straus
Molecular Cancer 2013, 12 :78 (17 July 2013)
Abstract | Full text | PDF | PubMed
7.
Complexity and specificity of experimentally induced expectations in motion perception
Nikos
Gekas,
Matthew
Chalk,
Aaron
R
Seitz,
Peggy
Seriès
BMC Neuroscience 2013, 14 (Suppl 1):P355 (8 July 2013)
Full text | PDF
8.
Consumption habits of pregnant women and implications for developmental biology: a survey of predominantly Hispanic women in California
Sarah
E
Santiago,
Grace
H
Park,
Kelly
J
Huffman
Nutrition Journal 2013, 12 :91 (1 July 2013)
Abstract | Full text | PDF | PubMed
9.
Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships
Ian
H
McHardy,
Maryam
Goudarzi,
Maomeng
Tong,
Paul
M
Ruegger,
Emma
Schwager,
John
R
Weger,
Thomas
G
Graeber,
Justin
L
Sonnenburg,
Steve
Horvath,
Curtis
Huttenhower,
Dermot
PB
McGovern,
Albert
J
Fornace,
James
Borneman,
Jonathan
Braun
Microbiome 2013, 1 :17 (5 June 2013)
Abstract | Full text | PDF
10.
5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction
Joseph
M
Dhahbi,
Stephen
R
Spindler,
Hani
Atamna,
Amy
Yamakawa,
Dario
Boffelli,
Patricia
Mote,
David
IK
Martin
BMC Genomics 2013, 14 :298 (2 May 2013)
Abstract | Full text | PDF | PubMed
11.
Generation of a luciferase-based reporter for CHH and CG DNA methylation in
Arabidopsis thaliana
Thanh Theresa
Dinh,
Michael
O’Leary,
So Youn
Won,
Shengben
Li,
Lorena
Arroyo,
Xigang
Liu,
Andrew
Defries,
Binglian
Zheng,
Sean
R
Cutler,
Xuemei
Chen
Silence 2013, 4 :1 (5 April 2013)
Abstract | Full text | PDF | PubMed
12.
5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea
Chi Keung
Cheng,
Chun Hang
Au,
Sarah
K
Wilke,
Jason
E
Stajich,
Miriam
E
Zolan,
Patricia
J
Pukkila,
Hoi Shan
Kwan
BMC Genomics 2013, 14 :195 (20 March 2013)
Abstract | Full text | PDF | PubMed
13.
Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis
Sourav
Roy,
Laetitia
Poidevin,
Tao
Jiang,
Howard
S
Judelson
BMC Genomics 2013, 14 :106 (16 February 2013)
Abstract | Full text | PDF | PubMed
14.
Empirical Bayesian LASSO-logistic regression for multiple binary trait locus mapping
Anhui
Huang,
Shizhong
Xu,
Xiaodong
Cai
BMC Genetics 2013, 14 :5 (15 February 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
15.
Agonist and antagonist binding to the nuclear vitamin D receptor: dynamics, mutation effects and functional implications
Sepideh
Yaghmaei,
Christopher
Roberts,
Rizi
Ai,
Mathew
T
Mizwicki,
Chia-en
A
Chang
In Silico Pharmacology 2013, 1 :2 (12 February 2013)
Abstract | Full text | PDF
16.
Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes
Yujun
Han,
Shanshan
Qin,
Susan
R
Wessler
BMC Genomics 2013, 14 :71 (31 January 2013)
Abstract | Full text | PDF | PubMed
17.
Molecular decay of enamel matrix protein genes in turtles and other edentulous amniotes
Robert
W
Meredith,
John
Gatesy,
Mark
S
Springer
BMC Evolutionary Biology 2013, 13 :20 (23 January 2013)
Abstract | Full text | PDF | PubMed
18.
A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree
En-Yu
Lai,
Wei-Bung
Wang,
Tao
Jiang,
Kun-Pin
Wu
BMC Bioinformatics 2012, 13 (Suppl 17):S19 (13 December 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
19.
A fast and accurate algorithm for single individual haplotyping
Minzhu
Xie,
Jianxin
Wang,
Tao
Jiang
BMC Systems Biology 2012, 6 (Suppl 2):S8 (12 December 2012)
Abstract | Full text | PDF | PubMed
20.
Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi
Kristiina
Nygren,
Andreas
Wallberg,
Nicklas
Samils,
Jason
E
Stajich,
Jeffrey
P
Townsend,
Magnus
Karlsson,
Hanna
Johannesson
BMC Evolutionary Biology 2012, 12 :229 (27 November 2012)
Abstract | Full text | PDF | PubMed
21.
A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping
Patrick
Ollitrault,
Javier
Terol,
Chunxian
Chen,
Claire
T
Federici,
Samia
Lotfy,
Isabelle
Hippolyte,
Frédérique
Ollitrault,
Aurélie
Bérard,
Aurélie
Chauveau,
Jose
Cuenca,
Gilles
Costantino,
Yildiz
Kacar,
Lisa
Mu,
Andres
Garcia-Lor,
Yann
Froelicher,
Pablo
Aleza,
Anne
Boland,
Claire
Billot,
Luis
Navarro,
François
Luro,
Mikeal
L
Roose,
Frederick
G
Gmitter,
Manuel
Talon,
Dominique
Brunel
BMC Genomics 2012, 13 :593 (5 November 2012)
Abstract | Full text | PDF | PubMed
22.
Ixodes scapularis saliva mitigates inflammatory cytokine secretion during Anaplasma phagocytophilum stimulation of immune cells
Gang
Chen,
Maiara
S
Severo,
Mohammad
Sohail,
Olivia
S
Sakhon,
Stephen
K
Wikel,
Michail
Kotsyfakis,
Joao
HF
Pedra
Parasites & Vectors 2012, 5 :229 (10 October 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
This study demonstrates that Ixodes scapularis saliva inhibits Toll-like (TLR) and Nod-like receptor (NLR) induced-inflammatory cytokine secretion by mouse and human immune cells. I. scapularis saliva also mitigates the cytokine response by macrophages during challenge with Anaplasma phagocytophilum. Image: Anaplasma phagocytophilum engulfed by macrophages [membranes (green), A. phagocytophilum (red), and nuclei (blue)]. Magnification is 600x4=2400.
23.
Separating metagenomic short reads into genomes via clustering
Olga
Tanaseichuk,
James
Borneman,
Tao
Jiang
Algorithms for Molecular Biology 2012, 7 :27 (26 September 2012)
Abstract | Full text | PDF | PubMed
24.
High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice
Blanca
E
Barrera-Figueroa,
Lei
Gao,
Zhigang
Wu,
Xuefeng
Zhou,
Jianhua
Zhu,
Hailing
Jin,
Renyi
Liu,
Jian-Kang
Zhu
BMC Plant Biology 2012, 12 :132 (3 August 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
25.
Rapid selection and identification of Miscanthus genotypes with enhanced glucan and xylan yields from hydrothermal pretreatment followed by enzymatic hydrolysis
Taiying
Zhang,
Charles
E
Wyman,
Katrin
Jakob,
Bin
Yang
Biotechnology for Biofuels 2012, 5 :56 (3 August 2012)
Abstract | Full text | PDF | PubMed