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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, Riverside

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1.

Research article   Open Access

The unique evolution of the programmed cell death 4 protein in plants

Shijun Cheng, Renyi Liu, Daniel R Gallie BMC Evolutionary Biology 2013, 13:199 (16 September 2013)

Abstract | Provisional PDF | PubMed

2.

Research article   Open Access

Cytological and molecular characterization of three gametoclones of Citrus clementina

Maria Germana, Pablo Aleza, Esther Carrera, Chunxian Chen, Benedetta Chiancone, Gilles Costantino, Dominique Dambier, Xiuxin Deng, Claire T Federici, Yann Froelicher, Wenwu Guo, Victoria Ibáñez, José Juárez, Kevin Kwok, François Luro, Marcos A Machado, Miguel Naranjo, Luis Navarro, Patrick Ollitrault, Gabino Ríos, Mikeal L Roose, Manuel Talon, Qiang Xu, Fred G Gmitter BMC Plant Biology 2013, 13:129 (10 September 2013)

Abstract | Full text | PDF | PubMed

3.

Research   Open Access

Bacterial artificial chromosome derived simian varicella virus is pathogenic in vivo

Christine Meyer, Jesse Dewane, Kristen Haberthur, Flora Engelmann, Nicole Arnold, Wayne Gray, Ilhem Messaoudi Virology Journal 2013, 10:278 (8 September 2013)

Abstract | Full text | PDF | PubMed

4.

Letter   Open Access

Thermo-mechanical coupling and size effects in micro and nano resonators

Sandeep Kumar, Tarek Alam, Aman Haque Micro and Nano Systems Letters 2013, 1:2 (6 August 2013)

Abstract | Full text | PDF

5.

Research   Open Access

The fate of lignin during hydrothermal pretreatment

Heather L Trajano, Nancy L Engle, Marcus Foston, Arthur J Ragauskas, Timothy J Tschaplinski, Charles E Wyman Biotechnology for Biofuels 2013, 6:110 (1 August 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access Highly Accessed

TNFα and IL-17 cooperatively stimulate glucose metabolism and growth factor production in human colorectal cancer cells

Daniel S Straus Molecular Cancer 2013, 12:78 (17 July 2013)

Abstract | Full text | PDF | PubMed

7.

Poster presentation   Open Access

Complexity and specificity of experimentally induced expectations in motion perception

Nikos Gekas, Matthew Chalk, Aaron R Seitz, Peggy Seriès BMC Neuroscience 2013, 14(Suppl 1):P355 (8 July 2013)

Full text | PDF

8.

Research   Open Access Highly Accessed

Consumption habits of pregnant women and implications for developmental biology: a survey of predominantly Hispanic women in California

Sarah E Santiago, Grace H Park, Kelly J Huffman Nutrition Journal 2013, 12:91 (1 July 2013)

Abstract | Full text | PDF | PubMed

9.

Research   Open Access Highly Accessed

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

Ian H McHardy, Maryam Goudarzi, Maomeng Tong, Paul M Ruegger, Emma Schwager, John R Weger, Thomas G Graeber, Justin L Sonnenburg, Steve Horvath, Curtis Huttenhower, Dermot PB McGovern, Albert J Fornace, James Borneman, Jonathan Braun Microbiome 2013, 1:17 (5 June 2013)

Abstract | Full text | PDF

10.

Research article   Open Access Highly Accessed

5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction

Joseph M Dhahbi, Stephen R Spindler, Hani Atamna, Amy Yamakawa, Dario Boffelli, Patricia Mote, David IK Martin BMC Genomics 2013, 14:298 (2 May 2013)

Abstract | Full text | PDF | PubMed

11.

Methods   Open Access

Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana

Thanh Theresa Dinh, Michael O’Leary, So Youn Won, Shengben Li, Lorena Arroyo, Xigang Liu, Andrew Defries, Binglian Zheng, Sean R Cutler, Xuemei Chen Silence 2013, 4:1 (5 April 2013)

Abstract | Full text | PDF | PubMed

12.

Research article   Open Access Highly Accessed

5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea

Chi Keung Cheng, Chun Hang Au, Sarah K Wilke, Jason E Stajich, Miriam E Zolan, Patricia J Pukkila, Hoi Shan Kwan BMC Genomics 2013, 14:195 (20 March 2013)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access Highly Accessed

Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis

Sourav Roy, Laetitia Poidevin, Tao Jiang, Howard S Judelson BMC Genomics 2013, 14:106 (16 February 2013)

Abstract | Full text | PDF | PubMed

14.

Methodology article   Open Access

Empirical Bayesian LASSO-logistic regression for multiple binary trait locus mapping

Anhui Huang, Shizhong Xu, Xiaodong Cai BMC Genetics 2013, 14:5 (15 February 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

15.

Original research   Open Access

Agonist and antagonist binding to the nuclear vitamin D receptor: dynamics, mutation effects and functional implications

Sepideh Yaghmaei, Christopher Roberts, Rizi Ai, Mathew T Mizwicki, Chia-en A Chang In Silico Pharmacology 2013, 1:2 (12 February 2013)

Abstract | Full text | PDF

16.

Research article   Open Access

Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes

Yujun Han, Shanshan Qin, Susan R Wessler BMC Genomics 2013, 14:71 (31 January 2013)

Abstract | Full text | PDF | PubMed

17.

Research article   Open Access Highly Accessed

Molecular decay of enamel matrix protein genes in turtles and other edentulous amniotes

Robert W Meredith, John Gatesy, Mark S Springer BMC Evolutionary Biology 2013, 13:20 (23 January 2013)

Abstract | Full text | PDF | PubMed

18.

Proceedings   Open Access

A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree

En-Yu Lai, Wei-Bung Wang, Tao Jiang, Kun-Pin Wu BMC Bioinformatics 2012, 13(Suppl 17):S19 (13 December 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

19.

Proceedings   Open Access

A fast and accurate algorithm for single individual haplotyping

Minzhu Xie, Jianxin Wang, Tao Jiang BMC Systems Biology 2012, 6(Suppl 2):S8 (12 December 2012)

Abstract | Full text | PDF | PubMed

20.

Research article   Open Access

Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi

Kristiina Nygren, Andreas Wallberg, Nicklas Samils, Jason E Stajich, Jeffrey P Townsend, Magnus Karlsson, Hanna Johannesson BMC Evolutionary Biology 2012, 12:229 (27 November 2012)

Abstract | Full text | PDF | PubMed

21.

Research article   Open Access

A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping

Patrick Ollitrault, Javier Terol, Chunxian Chen, Claire T Federici, Samia Lotfy, Isabelle Hippolyte, Frédérique Ollitrault, Aurélie Bérard, Aurélie Chauveau, Jose Cuenca, Gilles Costantino, Yildiz Kacar, Lisa Mu, Andres Garcia-Lor, Yann Froelicher, Pablo Aleza, Anne Boland, Claire Billot, Luis Navarro, François Luro, Mikeal L Roose, Frederick G Gmitter, Manuel Talon, Dominique Brunel BMC Genomics 2012, 13:593 (5 November 2012)

Abstract | Full text | PDF | PubMed

22.

Research   Open Access

Ixodes scapularis saliva mitigates inflammatory cytokine secretion during Anaplasma phagocytophilum stimulation of immune cells

Gang Chen, Maiara S Severo, Mohammad Sohail, Olivia S Sakhon, Stephen K Wikel, Michail Kotsyfakis, Joao HF Pedra Parasites & Vectors 2012, 5:229 (10 October 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This study demonstrates that Ixodes scapularis saliva inhibits Toll-like (TLR) and Nod-like receptor (NLR) induced-inflammatory cytokine secretion by mouse and human immune cells. I. scapularis saliva also mitigates the cytokine response by macrophages during challenge with Anaplasma phagocytophilum. Image: Anaplasma phagocytophilum engulfed by macrophages [membranes (green), A. phagocytophilum (red), and nuclei (blue)]. Magnification is 600x4=2400.

23.

Research   Open Access Highly Accessed

Separating metagenomic short reads into genomes via clustering

Olga Tanaseichuk, James Borneman, Tao Jiang Algorithms for Molecular Biology 2012, 7:27 (26 September 2012)

Abstract | Full text | PDF | PubMed

24.

Research article   Open Access Highly Accessed

High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice

Blanca E Barrera-Figueroa, Lei Gao, Zhigang Wu, Xuefeng Zhou, Jianhua Zhu, Hailing Jin, Renyi Liu, Jian-Kang Zhu BMC Plant Biology 2012, 12:132 (3 August 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

25.

Research   Open Access

Rapid selection and identification of Miscanthus genotypes with enhanced glucan and xylan yields from hydrothermal pretreatment followed by enzymatic hydrolysis

Taiying Zhang, Charles E Wyman, Katrin Jakob, Bin Yang Biotechnology for Biofuels 2012, 5:56 (3 August 2012)

Abstract | Full text | PDF | PubMed

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