151.
Modeling system states in liver cells: Survival, apoptosis and their modifications in response to viral infection
Nicole
Philippi,
Dorothee
Walter,
Rebekka
Schlatter,
Karine
Ferreira,
Michael
Ederer,
Oliver
Sawodny,
Jens
Timmer,
Christoph
Borner,
Thomas
Dandekar
BMC Systems Biology 2009, 3 :97 (22 September 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Editor’s summary
A Boolean network model for liver cells has four stable system states, two for survival and two for apoptosis, and is validated by successful predictions of the outcome of viral infection and varying growth substrate signals in the presence of FasL.
152.
DCE-MRI assessment of the effect of vandetanib on tumor vasculature in patients with advanced colorectal cancer and liver metastases: a randomized phase I study
Klaus
Mross,
Ulrike
Fasol,
Annette
Frost,
Robin
Benkelmann,
Jan
Kuhlmann,
Martin
Büchert,
Clemens
Unger,
Hubert
Blum,
Jürgen
Hennig,
Tsveta
P
Milenkova,
Jean
Tessier,
Annetta
D
Krebs,
Anderson
J
Ryan,
Richard
Fischer
Journal of Angiogenesis Research 2009, 1 :5 (21 September 2009)
Abstract | Full text | PDF | PubMed
153.
A model of free monkey scribbling based on the propagation of cell assembly activity
Alexander
Hanuschkin,
J Michael
Herrmann,
Abigail
Morrison,
Markus
Diesmann
BMC Neuroscience 2009, 10 (Suppl 1):P300 (13 July 2009)
Full text | PDF
154.
Reservoir computing methods for functional identification of biological networks
Tayfun
Gürelu,
Stefan
Rotter,
Ulrich
Egert
BMC Neuroscience 2009, 10 (Suppl 1):P293 (13 July 2009)
Full text | PDF
155.
Finite synaptic potentials cause a non-linear instantaneous response of the integrate-and-fire model
Moritz
Helias,
Moritz
Deger,
Markus
Diesmann,
Stefan
Rotter
BMC Neuroscience 2009, 10 (Suppl 1):P225 (13 July 2009)
Full text | PDF
156.
Impaired structural plasticity increases connectivity in developing cortical networks
Samora
Okujeni,
Steffen
Kandler,
Oliver
Weihberger,
Ulrich
Egert
BMC Neuroscience 2009, 10 (Suppl 1):P208 (13 July 2009)
Full text | PDF
157.
Dynamics of non-linear cortico-cortical interactions during motion integration in early visual cortex: a spiking neural network model of an optical imaging study in the awake monkey
Jens
Kremkow,
Laurent
Perrinet,
Alexandre
Reynaud,
Ad
Aertsen,
Guillaume
S
Masson,
Frederic
Chavane
BMC Neuroscience 2009, 10 (Suppl 1):P176 (13 July 2009)
Full text | PDF
158.
The computational role of the feedforward inhibition in the striatum network
Man
Yim,
Arvind
Kumar,
Ad
Aertsen
BMC Neuroscience 2009, 10 (Suppl 1):P163 (13 July 2009)
Full text | PDF
159.
Dynamical emergence of fear and extinction cells in the amygdala – a computational model
Ioannis
Vlachos,
Arvind
Kumar,
Andreas
Lüthi,
Ad
Aertsen
BMC Neuroscience 2009, 10 (Suppl 1):P142 (13 July 2009)
Full text | PDF
160.
The Poisson process with dead time captures important statistical features of neural activity
Moritz
Deger,
Stefano
Cardanobile,
Moritz
Helias,
Stefan
Rotter
BMC Neuroscience 2009, 10 (Suppl 1):P110 (13 July 2009)
Full text | PDF
161.
Higher-order correlations in non-stationary parallel spike trains: statistical modeling and inference
Benjamin
Staude,
Stefan
Rotter
BMC Neuroscience 2009, 10 (Suppl 1):P108 (13 July 2009)
Full text | PDF
162.
Control of the temporal interplay between excitation and inhibition by the statistics of visual input
Jens
Kremkow,
Laurent
Perrinet,
Cyril
Monier,
Yves
Frégnac,
Guillaume
S
Masson,
Ad
Aertsen
BMC Neuroscience 2009, 10 (Suppl 1):O21 (13 July 2009)
Full text | PDF
163.
The evolution of nuclear auxin signalling
Ivan
A
Paponov,
William
Teale,
Daniel
Lang,
Martina
Paponov,
Ralf
Reski,
Stefan
A
Rensing,
Klaus
Palme
BMC Evolutionary Biology 2009, 9 :126 (3 June 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
164.
Radical loss of an extreme extra-pair mating system
Sjouke
A
Kingma,
Michelle
L
Hall,
Gernot
Segelbacher,
Anne
Peters
BMC Ecology 2009, 9 :15 (19 May 2009)
Abstract | Full text | PDF | PubMed
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Editor’s summary
Extra-pair paternity is common in Australian fairy wrens, but one species, the purple-crowned fairy wren, is surprisingly faithful despite sharing life history parameters with other birds in this genus, suggesting that minor inter-specific differences can cause radical shifts in behavior.
165.
Survey-based naming conventions for use in OBO Foundry ontology development
Daniel
Schober,
Barry
Smith,
Suzanna
E
Lewis,
Waclaw
Kusnierczyk,
Jane
Lomax,
Chris
Mungall,
Chris
F
Taylor,
Philippe
Rocca-Serra,
Susanna-Assunta
Sansone
BMC Bioinformatics 2009, 10 :125 (27 April 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
166.
Genetic variants of the promoter of the heme oxygenase-1 gene and their influence on cardiovascular disease (The Ludwigshafen Risk and Cardiovascular Health Study)
Nicola
Lüblinghoff,
Karl
Winkler,
Bernhard
R
Winkelmann,
Ursula
Seelhorst,
Britta
Wellnitz,
Bernhard
O
Boehm,
Winfried
März,
Michael
M
Hoffmann
BMC Medical Genetics 2009, 10 :36 (23 April 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
167.
In vitro activity of pyronaridine against Plasmodium falciparum and comparative evaluation of anti-malarial drug susceptibility assays
Florian
Kurth,
Peter
Pongratz,
Sabine
Bélard,
Benjamin
Mordmüller,
Peter
G
Kremsner,
Michael
Ramharter
Malaria Journal 2009, 8 :79 (23 April 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Editor’s summary
A paper describing the activity of pyronaridine in clinical isolates of P. falciparum in Gabon. Pyronaridine is highly active in chloroquine-resistant parasites and seems a promising partner drug for artemisinin-based combination therapy
168.
Indications for computed tomography (CT-) diagnostics in proximal humeral fractures: a comparative study of plain radiography and computed tomography
Christian
Bahrs,
Bernd
Rolauffs,
Norbert
P
Südkamp,
Hagen
Schmal,
Christoph
Eingartner,
Klaus
Dietz,
Philippe
L
Pereira,
Kuno
Weise,
Erich
Lingenfelter,
Peter
Helwig
BMC Musculoskeletal Disorders 2009, 10 :33 (2 April 2009)
Abstract | Full text | PDF | PubMed
169.
Biocomputational prediction of non-coding RNAs in model cyanobacteria
Björn
Voß,
Jens
Georg,
Verena
Schön,
Susanne
Ude,
Wolfgang
R
Hess
BMC Genomics 2009, 10 :123 (23 March 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Editor’s summary
New conserved non-coding RNA (ncRNAs) in four species of cyanobacteria have been validated, opening the way for a less stringent comparative analysis with experimental support to discover even more previously unidentified elements.
170.
TLR2 and TLR4 signaling in macrophages is negatively regulated by a Lyn-PI3K module and promoted by SHIP1
S
Keck,
MA
Freudenberg,
M
Huber
Cell Communication and Signaling 2009, 7 (Suppl 1):A78 (26 February 2009)
Full text | PDF
171.
Expiratory automatic endotracheal tube compensation reduces dynamic hyperinflation in a physical lung model
Christoph
Haberthür,
Annekathrin
Mehlig,
John
F
Stover,
Stefan
Schumann,
Knut
Möller,
Hans-Joachim
Priebe,
Josef
Guttmann
Critical Care 2009, 13 :R4 (23 January 2009)
Abstract | Full text | PDF | PubMed
172.
Chromosomal evolution of the PKD1 gene family in primates
Stefan
Kirsch,
Juanjo
Pasantes,
Andreas
Wolf,
Nadia
Bogdanova,
Claudia
Münch,
Arseni
Markoff,
Petra
Pennekamp,
Michael
Krawczak,
Bernd
Dworniczak,
Werner
Schempp
BMC Evolutionary Biology 2009, 9 :14 (16 January 2009)
Abstract | Full text | PDF
173.
Incorporating pathway information into boosting estimation of high-dimensional risk prediction models
Harald
Binder,
Martin
Schumacher
BMC Bioinformatics 2009, 10 :18 (13 January 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
174.
A prospective, non-randomized phase II trial of Trastuzumab and Capecitabine in patients with HER2 expressing metastasized pancreatic cancer
Andre
Mihaljevic,
Peter
Büchler,
Jan
Harder,
Ralf
Hofheinz,
Michael
Gregor,
Stephan
Kanzler,
Wolff
Schmiegel,
Volker
Heinemann,
Esther
Endlicher,
Günter
Klöppel,
Thomas
Seufferlein,
Michael
Geissler
BMC Surgery 2009, 9 :1 (8 January 2009)
Abstract | Full text | PDF | PubMed
175.
Undue reliance on I 2 in assessing heterogeneity may mislead
Gerta
Rücker,
Guido
Schwarzer,
James
R
Carpenter,
Martin
Schumacher
BMC Medical Research Methodology 2008, 8 :79 (27 November 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Editor’s summary
While the heterogeneity statistic I^2 increases with the studies' sample size, tau^2 measures the clinical relevance of any heterogeneity, and is a more appropriate tool for deciding whether to pool treatment estimates in a meta-analysis.