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Member - Leibniz Institute for Age Research - Fritz Lipmann Institute

The institutes mission is to understand the molecular mechanisms that underlie ageing and that lead to age-related diseases. This knowledge will contribute to sustained health in an ageing society.

http://www.fli-leibniz.de

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	1.	Research article Parallel evolution of senescence in annual fishes in response to extrinsic mortality Eva Terzibasi Tozzini, Alexander Dorn, Enoch Ng’oma, Matej Polačik, Radim Blažek, Kathrin Reichwald, Andreas Petzold, Brian Watters, Martin Reichard, Alessandro Cellerino BMC Evolutionary Biology 2013, 13:77 (3 April 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Research article *The transcript catalogue of the short-lived fish Nothobranchius furzeri* provides insights into age-dependent changes of mRNA levels** Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer BMC Genomics 2013, 14:185 (16 March 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research An investigation of the effects of the antioxidants, ebselen or N-acetyl cysteine on human peripheral blood mononuclear cells and T cells Shiva Marthandan, Paul Hyland, Graham Pawelec, Yvonne Barnett Immunity & Ageing 2013, 10:7 (21 February 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research article Association studies of the copy-number variable ß-defensin cluster on 8p23.1 in adenocarcinoma and chronic pancreatitis Stefan Taudien, Gabor Gäbel, Oliver Kuss, Marco Groth, Robert Grützmann, Klaus Huse, Alexander Kluttig, Andreas Wolf, Michael Nothnagel, Philip Rosenstiel, Karin Halina Greiser, Karl Werdan, Michael Krawczak, Christian Pilarsky, Matthias Platzer BMC Research Notes 2012, 5:629 (13 November 2012) Abstract \| Full text \| PDF \| PubMed
	5.	Research article *Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus* reveals novel insights into the genome and MpkA dependent gene expression** Sebastian Müller, Clara Baldin, Marco Groth, Reinhard Guthke, Olaf Kniemeyer, Axel A Brakhage, Vito Valiante BMC Genomics 2012, 13:519 (2 October 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Research article Sequencing of BAC pools by different next generation sequencing platforms and strategies Stefan Taudien, Burkhard Steuernagel, Ruvini Ariyadasa, Daniela Schulte, Thomas Schmutzer, Marco Groth, Marius Felder, Andreas Petzold, Uwe Scholz, Klaus FX Mayer, Nils Stein, Matthias Platzer BMC Research Notes 2011, 4:411 (14 October 2011) Abstract \| Full text \| PDF \| PubMed
	7.	Research article *From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale* L.)** Grit Haseneyer, Thomas Schmutzer, Michael Seidel, Ruonan Zhou, Martin Mascher, Chris-Carolin Schön, Stefan Taudien, Uwe Scholz, Nils Stein, Klaus FX Mayer, Eva Bauer BMC Plant Biology 2011, 11:131 (28 September 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	8.	Research article Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing Stefan Taudien, Karol Szafranski, Marius Felder, Marco Groth, Klaus Huse, Francesca Raffaelli, Andreas Petzold, Xinmin Zhang, Philip Rosenstiel, Jochen Hampe, Stefan Schreiber, Matthias Platzer BMC Genomics 2011, 12:243 (18 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	9.	Research article Origin of land plants: Do conjugating green algae hold the key? Sabina Wodniok, Henner Brinkmann, Gernot Glöckner, Andrew J Heidel, Hervé Philippe, Michael Melkonian, Burkhard Becker BMC Evolutionary Biology 2011, 11:104 (18 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The closest living algal relative of the land plants appears to be the conjugating green algae rather than the stonewort-like algae, as revealed by phylogenetic analysis of 129 nuclear genes across a broad range of land plants and algal groups.
	10.	Research article *To be or not to be the odd one out - Allele-specific transcription in pentaploid dogroses (Rosa* L. sect. Caninae (DC.) Ser)** Christiane M Ritz, Ines Köhnen, Marco Groth, Günter Theißen, Volker Wissemann BMC Plant Biology 2011, 11:37 (23 February 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Characterization of the Rosa canina pentaploid genome reveals at least four different alleles present for each locus investigated, locating to bivalent and univalent chromosomes; all alleles are expressed suggesting the absence of unidirectional silencing seen in other allopolyploid systems.
	11.	Research Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi Anke Burmester, Ekaterina Shelest, Gernot Glöckner, Christoph Heddergott, Susann Schindler, Peter Staib, Andrew Heidel, Marius Felder, Andreas Petzold, Karol Szafranski, Marc Feuermann, Ivo Pedruzzi, Steffen Priebe, Marco Groth, Robert Winkler, Wenjun Li, Olaf Kniemeyer, Volker Schroeckh, Christian Hertweck, Bernhard Hube, Theodore C White, Matthias Platzer, Reinhard Guthke, Joseph Heitman, Johannes Wöstemeyer, Peter F Zipfel, Michel Monod, Axel A Brakhage Genome Biology 2011, 12:R7 (19 January 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Genome sequences from two dermatophytic fungi shed light on the biology and pathogenesis of these skin disease-causing organisms
	12.	Research article DNA damage-induced translocation of S100A11 into the nucleus regulates cell proliferation Theresa Gorsler, Ulrike Murzik, Tobias Ulbricht, Julia Hentschel, Peter Hemmerich, Christian Melle BMC Cell Biology 2010, 11:100 (17 December 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	13.	Research article *Defensin alpha 6 (DEFA 6) overexpression threshold of over 60 fold can distinguish between adenoma and fully blown colon carcinoma in individual patients* Mariya Y Radeva, Franziska Jahns, Anne Wilhelm, Michael Glei, Utz Settmacher, Karl Greulich, Henning Mothes BMC Cancer 2010, 10:588 (27 October 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	14.	Letter to the Editor Potential negative impacts and low effectiveness in the use of African annual killifish in the biocontrol of aquatic mosquito larvae in temporary water bodies Martin Reichard, Brian R Watters, Rudolf H Wildekamp, Rainer Sonnenberg, Béla Nagy, Matej Polačik, Stefano Valdesalici, Alessandro Cellerino, Barry J Cooper, Holger Hengstler, John Rosenstock, Ian Sainthouse Parasites & Vectors 2010, 3:89 (16 September 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Low effectiveness, ecological threats and ethical issues related to a recent suggestion to use an African annual fish as a tool to control mosquito larvae in temporary freshwater habitats are discussed. Image: Wild-caught male Nothobranchius guentheri from Zanzibar Island (courtesy Brian R Watters).
	15.	Short Report NOD2-C2 - a novel NOD2 isoform activating NF-κB in a muramyl dipeptide-independent manner Marcel Kramer, Janne Boeck, Daniela Reichenbach, Christoph Kaether, Stefan Schreiber, Matthias Platzer, Philip Rosenstiel, Klaus Huse BMC Research Notes 2010, 3:224 (10 August 2010) Abstract \| Full text \| PDF \| PubMed
	16.	Research article Expression pattern of the thrombopoietin receptor (Mpl) in the murine central nervous system Anna Ivanova, Jens Wuerfel, Juan Zhang, Olaf Hoffmann, Matthias Ballmaier, Christof Dame BMC Developmental Biology 2010, 10:77 (28 July 2010) Abstract \| Full text \| PDF \| PubMed
	17.	Research article *Characterisation of prostate cancer lesions in heterozygous Men1* mutant mice** Christelle Seigne, Sandra Fontanière, Christine Carreira, Jieli Lu, Wei-Ming Tong, Bernard Fontanière, Zhao-Qi Wang, Chang Zhang, Lucien Frappart BMC Cancer 2010, 10:395 (27 July 2010) Abstract \| Full text \| PDF \| PubMed \| F1000 Medicine \| F1000 Biology
	18.	Research article Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor Raoul Frijters, Wilco Fleuren, Erik JM Toonen, Jan P Tuckermann, Holger M Reichardt, Hans van der Maaden, Andrea van Elsas, Marie-Jose van Lierop, Wim Dokter, Jacob de Vlieg, Wynand Alkema BMC Genomics 2010, 11:359 (5 June 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	19.	Database TassDB2 - A comprehensive database of subtle alternative splicing events Rileen Sinha, Thorsten Lenser, Niels Jahn, Ulrike Gausmann, Swetlana Friedel, Karol Szafranski, Klaus Huse, Philip Rosenstiel, Jochen Hampe, Stefan Schuster, Michael Hiller, Rolf Backofen, Matthias Platzer BMC Bioinformatics 2010, 11:216 (29 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	20.	Research article Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens Rileen Sinha, Andreas D Zimmer, Kathrin Bolte, Daniel Lang, Ralf Reski, Matthias Platzer, Stefan A Rensing, Rolf Backofen BMC Plant Biology 2010, 10:76 (28 April 2010) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing Stefan Taudien, Marco Groth, Klaus Huse, Andreas Petzold, Karol Szafranski, Jochen Hampe, Philip Rosenstiel, Stefan Schreiber, Matthias Platzer BMC Genomics 2010, 11:252 (19 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	22.	Research article Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum Ines Yang, Uwe John, Sára Beszteri, Gernot Glöckner, Bernd Krock, Alexander Goesmann, Allan D Cembella BMC Genomics 2010, 11:248 (19 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	23.	Research A new Purkinje cell antibody (anti-Ca) associated with subacute cerebellar ataxia: immunological characterization Sven Jarius, Klaus P Wandinger, Sigrun Horn, Heike Heuer, Brigitte Wildemann Journal of Neuroinflammation 2010, 7:21 (12 March 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	24.	Research article Assembly dynamics of PML nuclear bodies in living cells Peter Brand, Thorsten Lenser, Peter Hemmerich PMC Biophysics 2010, 3:3 (5 March 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Promyelocytic leukemia nuclear bodies (PML NBs) are involved in the regulation of apoptosis, antiviral responses, the DNA damage response and chromatin structure, but their precise biochemical function in these nuclear pathways is unknown. In this study we determined PML NB assembly dynamics by live cell imaging, combined with mathematical modeling.
	25.	Research article Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum Israel Barrantes, Gernot Glockner, Sonja Meyer, Wolfgang Marwan BMC Genomics 2010, 11:115 (17 February 2010) Abstract \| Full text \| PDF \| PubMed
	26.	Research article Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens Heiko Vogel, Andrew J Heidel, David G Heckel, Astrid T Groot BMC Genomics 2010, 11:29 (14 January 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	27.	Methodology article De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley Burkhard Steuernagel, Stefan Taudien, Heidrun Gundlach, Michael Seidel, Ruvini Ariyadasa, Daniela Schulte, Andreas Petzold, Marius Felder, Andreas Graner, Uwe Scholz, Klaus FX Mayer, Matthias Platzer, Nils Stein BMC Genomics 2009, 10:547 (20 November 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	28.	Research article Adapted Boolean network models for extracellular matrix formation Johannes Wollbold, René Huber, Dirk Pohlers, Dirk Koczan, Reinhard Guthke, Raimund W Kinne, Ulrike Gausmann BMC Systems Biology 2009, 3:77 (21 July 2009) Abstract \| Full text \| PDF \| PubMed
	29.	Research *High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research* Kathrin Reichwald, Chris Lauber, Indrajit Nanda, Jeanette Kirschner, Nils Hartmann, Susanne Schories, Ulrike Gausmann, Stefan Taudien, Markus B Schilhabel, Karol Szafranski, Gernot Glöckner, Michael Schmid, Alessandro Cellerino, Manfred Schartl, Christoph Englert, Matthias Platzer Genome Biology 2009, 10:R16 (11 February 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A genomic analysis of the annual fish Nothobranchius furzeri, a vertebrate with the shortest known life span in captivity and which may provide a new model organism for aging research.
	30.	Research article Differential RelA- and RelB-dependent gene transcription in LTβR-stimulated mouse embryonic fibroblasts Agnes Lovas, Dörte Radke, Daniela Albrecht, Z Buket Yilmaz, Ulrich Möller, Andreas JR Habenicht, Falk Weih BMC Genomics 2008, 9:606 (16 December 2008) Abstract \| Full text \| PDF \| PubMed
	31.	Research Lack of association of genetic variants in genes of the endocannabinoid system with anorexia nervosa Timo Müller, Kathrin Reichwald, Günter Brönner, Jeanette Kirschner, Thuy Nguyen, André Scherag, Wolfgang Herzog, Beate Herpertz-Dahlmann, Peter Lichtner, Thomas Meitinger, Matthias Platzer, Helmut Schäfer, Johannes Hebebrand, Anke Hinney Child and Adolescent Psychiatry and Mental Health 2008, 2:33 (17 November 2008) Abstract \| Full text \| PDF \| PubMed
	32.	Research article Improved identification of conserved cassette exons using Bayesian networks Rileen Sinha, Michael Hiller, Rainer Pudimat, Ulrike Gausmann, Matthias Platzer, Rolf Backofen BMC Bioinformatics 2008, 9:477 (12 November 2008) Abstract \| Full text \| PDF \| PubMed
	33.	Research article Identification of intra-group, inter-individual, and gene-specific variances in mRNA expression profiles in the rheumatoid arthritis synovial membrane René Huber, Christian Hummert, Ulrike Gausmann, Dirk Pohlers, Dirk Koczan, Reinhard Guthke, Raimund W Kinne Arthritis Research & Therapy 2008, 10:R98 (22 August 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	34.	Research article Comparative analysis of sequence features involved in the recognition of tandem splice sites Ralf Bortfeldt, Stefanie Schindler, Karol Szafranski, Stefan Schuster, Dirk Holste BMC Genomics 2008, 9:202 (30 April 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	35.	Research article *Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana* SR and SR-related protein-coding genes** Stefanie Schindler, Karol Szafranski, Michael Hiller, Gul Ali, Saiprasad G Palusa, Rolf Backofen, Matthias Platzer, Anireddy SN Reddy BMC Genomics 2008, 9:159 (10 April 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	36.	Research article Selection against tandem splice sites affecting structured protein regions Michael Hiller, Karol Szafranski, Klaus Huse, Rolf Backofen, Matthias Platzer BMC Evolutionary Biology 2008, 8:89 (21 March 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	37.	Research article A first glimpse at the transcriptome of Physarum polycephalum Gernot Glöckner, Georg Golderer, Gabriele Werner-Felmayer, Sonja Meyer, Wolfgang Marwan BMC Genomics 2008, 9:6 (7 January 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	38.	Research article Functional characterization of two novel 5' untranslated exons reveals a complex regulation of NOD2 protein expression Philip Rosenstiel, Klaus Huse, Andre Franke, Jochen Hampe, Kathrin Reichwald, Cornelia Platzer, Roland G Roberts, Christopher G Mathew, Matthias Platzer, Stefan Schreiber BMC Genomics 2007, 8:472 (20 December 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	39.	Research Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns Karol Szafranski, Stefanie Schindler, Stefan Taudien, Michael Hiller, Klaus Huse, Niels Jahn, Stefan Schreiber, Rolf Backofen, Matthias Platzer Genome Biology 2007, 8:R154 (1 August 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary TG dinucleotides functioning as alternative 3' splice sites were identified and experimentally verified in 36 human genes.
	40.	Research article Expression profiling of Dexamethasone-treated primary chondrocytes identifies targets of glucocorticoid signalling in endochondral bone development Claudine G James, Veronica Ulici, Jan Tuckermann, T Michael Underhill, Frank Beier BMC Genomics 2007, 8:205 (1 July 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	41.	Research article Constitutive upregulation of the transforming growth factor-β pathway in rheumatoid arthritis synovial fibroblasts Dirk Pohlers, Andreas Beyer, Dirk Koczan, Thomas Wilhelm, Hans-Jürgen Thiesen, Raimund W Kinne Arthritis Research & Therapy 2007, 9:R59 (26 June 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	42.	Research article *The ancestor of the Paulinella* chromatophore obtained a carboxysomal operon by horizontal gene transfer from a Nitrococcus-like γ-proteobacterium** Birger Marin, Eva CM Nowack, Gernot Glöckner, Michael Melkonian BMC Evolutionary Biology 2007, 7:85 (5 June 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	43.	Research article Gain and loss of polyadenylation signals during evolution of green algae Sabina Wodniok, Andreas Simon, Gernot Glöckner, Burkhard Becker BMC Evolutionary Biology 2007, 7:65 (18 April 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary There is a wide variation in polyadenylation signals among green algae ranging from a new UGUAA motif that arose in chlorophytes to a general lack of the A-rich motif that is typical of other eukaryotes.
	44.	Research Phylogenetically widespread alternative splicing at unusual GYNGYN donors Michael Hiller, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schreiber, Rolf Backofen, Matthias Platzer Genome Biology 2006, 7:R65 (25 July 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Computational and experimental evidence is given for alternative splicing at the unusual GYNGYN motif in several species, enabling in most cases subtle protein variations.