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1.

Research   Open Access

Temporal and spatial variation in bird and human use of beaches in southern California

Kevin D Lafferty, Donald A Rodriguez, Angela Chapman SpringerPlus 2013, 2:38 (6 February 2013)

Abstract | Full text | PDF

2.

Methodology   Open Access Highly Accessed

A do-it-yourself protocol for simple transcription activator-like effector assembly

Claudia Uhde-Stone, Nilang Gor, Tiffany Chin, Joseph Huang, Biao Lu Biological Procedures Online 2013, 15:3 (14 January 2013)

Abstract | Full text | PDF | PubMed

3.

Research article   Open Access

The fester locus in Botryllus schlosseri experiences selection

Marie L Nydam, Anthony W De Tomaso BMC Evolutionary Biology 2012, 12:249 (22 December 2012)

Abstract | Full text | PDF | PubMed

4.

Original article   Open Access

Personality and marital surplus

Shelly Lundberg IZA Journal of Labor Economics 2012, 1:3 (9 October 2012)

Abstract | Full text | PDF

5.

Research article   Open Access Highly Accessed

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

Annie R Lindgren, Molly S Pankey, Frederick G Hochberg, Todd H Oakley BMC Evolutionary Biology 2012, 12:129 (28 July 2012)

Abstract | Full text | PDF | PubMed

6.

Software   Open Access

URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

Brian Drawert, Stefan Engblom, Andreas Hellander BMC Systems Biology 2012, 6:76 (22 June 2012)

Abstract | Full text | PDF | PubMed

7.

Research article   Open Access

Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions

Cecilia Conaco, Pierre Neveu, Hongjun Zhou, Mary Arcila, Sandie M Degnan, Bernard M Degnan, Kenneth S Kosik BMC Genomics 2012, 13:209 (30 May 2012)

Abstract | Full text | PDF | PubMed

8.

Methodology article   Open Access

Accelerated maximum likelihood parameter estimation for stochastic biochemical systems

Bernie J Daigle, Min K Roh, Linda R Petzold, Jarad Niemi BMC Bioinformatics 2012, 13:68 (1 May 2012)

Abstract | Full text | PDF | PubMed

9.

Technical Note   Open Access

WAVOS: a MATLAB toolkit for wavelet analysis and visualization of oscillatory systems

Richard Harang, Guillaume Bonnet, Linda R Petzold BMC Research Notes 2012, 5:163 (26 March 2012)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access Highly Accessed

Cnidocyte discharge is regulated by light and opsin-mediated phototransduction

David C Plachetzki, Caitlin R Fong, Todd H Oakley BMC Biology 2012, 10:17 (5 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Sting cell discharge in the eyeless cnidarian hydra is regulated by opsin-mediated phototransduction, a pathway used in vision in other animals.

11.

Research   Open Access Highly Accessed

Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks

Aaron M Newman, Natasha B Gallo, Lisa S Hancox, Norma J Miller, Carolyn M Radeke, Michelle A Maloney, James B Cooper, Gregory S Hageman, Don H Anderson, Lincoln V Johnson, Monte J Radeke Genome Medicine 2012, 4:16 (24 February 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Comparative transcriptome profiling of eye specimens, integrated with functionally enriched protein network analysis reveals candidate drug targets for treating age-related macular degeneration.

12.

Research article   Open Access Highly Accessed

Core module biomarker identification with network exploration for breast cancer metastasis

Ruoting Yang, Bernie J Daigle, Linda R Petzold, Francis J Doyle BMC Bioinformatics 2012, 13:12 (18 January 2012)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access

Effect of modeled reduced gravity conditions on bacterial morphology and physiology

Raja Vukanti, Michael A Model, Laura G Leff BMC Microbiology 2012, 12:4 (12 January 2012)

Abstract | Full text | PDF | PubMed

14.

Software   Open Access Highly Accessed

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

John H Morris, Leonard Apeltsin, Aaron M Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D Bader, Thomas E Ferrin BMC Bioinformatics 2011, 12:436 (9 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

15.

Research article   Open Access Highly Accessed

Ten new complete mitochondrial genomes of pulmonates (Mollusca: Gastropoda) and their impact on phylogenetic relationships

Tracy R White, Michele M Conrad, Roger Tseng, Shaina Balayan, Rosemary Golding, António de Frias Martins, Benoît A Dayrat BMC Evolutionary Biology 2011, 11:295 (10 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

16.

Research article   Open Access Highly Accessed

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

John B Cole, George R Wiggans, Li Ma, Tad S Sonstegard, Thomas J Lawlor, Brian A Crooker, Curtis P Van Tassell, Jing Yang, Shengwen Wang, Lakshmi K Matukumalli, Yang Da BMC Genomics 2011, 12:408 (11 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

17.

Poster presentation   Open Access

Architectural constraints on learning and memory function

Ann M Hermundstad, Kevin S Brown, Danielle S Bassett, Jean M Carlson BMC Neuroscience 2011, 12(Suppl 1):P31 (18 July 2011)

Full text | PDF

18.

Research article   Open Access Highly Accessed

Reward system and temporal pole contributions to affective evaluation during a first person shooter video game

Krystyna A Mathiak, Martin Klasen, René Weber, Hermann Ackermann, Sukhwinder S Shergill, Klaus Mathiak BMC Neuroscience 2011, 12:66 (12 July 2011)

Abstract | Full text | PDF | PubMed

19.

Research article   Open Access

Quantitative characterization and analysis of the dynamic NF-κB response in microglia

Patrick W Sheppard, Xiaoyun Sun, John F Emery, Rona G Giffard, Mustafa Khammash BMC Bioinformatics 2011, 12:276 (5 July 2011)

Abstract | Full text | PDF | PubMed

20.

Review   Open Access Highly Accessed

Mitigating amphibian disease: strategies to maintain wild populations and control chytridiomycosis

Douglas C Woodhams, Jaime Bosch, Cheryl J Briggs, Scott Cashins, Leyla R Davis, Antje Lauer, Erin Muths, Robert Puschendorf, Benedikt R Schmidt, Brandon Sheafor, Jamie Voyles Frontiers in Zoology 2011, 8:8 (18 April 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

21.

Methodology article   Open Access

TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM)

Jeff Nie, Ron Stewart, Hang Zhang, James A Thomson, Fang Ruan, Xiaoqi Cui, Hairong Wei BMC Systems Biology 2011, 5:53 (15 April 2011)

Abstract | Full text | PDF | PubMed

22.

Research article   Open Access Highly Accessed

On the architecture of cell regulation networks

Yueheng Lan, Igor Mezić BMC Systems Biology 2011, 5:37 (2 March 2011)

Abstract | Full text | PDF | PubMed

23.

Research article   Open Access

Using Stochastic Causal Trees to Augment Bayesian Networks for Modeling eQTL Datasets

Kyle C Chipman, Ambuj K Singh BMC Bioinformatics 2011, 12:7 (6 January 2011)

Abstract | Full text | PDF | PubMed

24.

Research article   Open Access Highly Accessed

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

Tonia S Schwartz, Hongseok Tae, Youngik Yang, Keithanne Mockaitis, John L Van Hemert, Stephen R Proulx, Jeong-Hyeon Choi, Anne M Bronikowski BMC Genomics 2010, 11:694 (7 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

25.

Methodology article   Open Access

Confidence from uncertainty - A multi-target drug screening method from robust control theory

Camilla Luni, Jason E Shoemaker, Kevin R Sanft, Linda R Petzold, Francis J Doyle BMC Systems Biology 2010, 4:161 (24 November 2010)

Abstract | Full text | PDF | PubMed

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