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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, Santa Barbara

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1.

Research article   Open Access

Statistical Analysis of Dendritic Spine Distributions in Rat Hippocampal Cultures

Aruna Jammalamadaka, Sourav Banerjee, Kenneth S Kosik, Bangalore S Manjunath BMC Bioinformatics 2013, 14:287 (2 October 2013)

Abstract | Provisional PDF

2.

Research   Open Access

An integrated diversity and fusion framework for binary consensus over fading channels

Mehrzad Malmirchegini, Yasamin Mostofi EURASIP Journal on Advances in Signal Processing 2013, 2013:144 (4 September 2013)

Abstract | Full text | PDF

3.

Research   Open Access Highly Accessed

Chikungunya virus capsid protein contains nuclear import and export signals

Saijo Thomas, Jagdish Rai, Lijo John, Stephan Schaefer, Brigitte M Pützer, Ottmar Herchenröder Virology Journal 2013, 10:269 (28 August 2013)

Abstract | Full text | PDF | PubMed

4.

Research article   Open Access

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder

Ruoting Yang, Bernie J Daigle Jr, Seid Y Muhie, Rasha Hammamieh, Marti Jett, Linda Petzold, Francis J Doyle BMC Systems Biology 2013, 7:80 (20 August 2013)

Abstract | Full text | PDF | PubMed

5.

Methodology article   Open Access Highly Accessed

Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems

Maria Rodriguez-Fernandez, Markus Rehberg, Andreas Kremling, Julio R Banga BMC Systems Biology 2013, 7:76 (12 August 2013)

Abstract | Full text | PDF | PubMed

6.

Methodology article   Open Access

Estimating confidence intervals in predicted responses for oscillatory biological models

Peter C St John, Francis J Doyle BMC Systems Biology 2013, 7:71 (29 July 2013)

Abstract | Full text | PDF | PubMed

7.

Original article   Open Access

The productivity of return migrants: the case of China’s “Sea Turtles”

Wei Sun IZA Journal of Migration 2013, 2:5 (25 April 2013)

Abstract | Full text | PDF

8.

Research   Open Access

Incorporating geographical factors with artificial neural networks to predict reference values of erythrocyte sedimentation rate

Qingsheng Yang, Kevin M Mwenda, Miao Ge International Journal of Health Geographics 2013, 12:11 (12 March 2013)

Abstract | Full text | PDF | PubMed

9.

Research   Open Access

Molecular identification of microorganisms associated with the brine shrimp Artemia franciscana

Misty R Riddle, Bonnie K Baxter, Brian J Avery Aquatic Biosystems 2013, 9:7 (8 March 2013)

Abstract | Full text | PDF | PubMed

10.

Research   Open Access

Temporal and spatial variation in bird and human use of beaches in southern California

Kevin D Lafferty, Donald A Rodriguez, Angela Chapman SpringerPlus 2013, 2:38 (6 February 2013)

Abstract | Full text | PDF

11.

Methodology   Open Access Highly Accessed

A do-it-yourself protocol for simple transcription activator-like effector assembly

Claudia Uhde-Stone, Nilang Gor, Tiffany Chin, Joseph Huang, Biao Lu Biological Procedures Online 2013, 15:3 (14 January 2013)

Abstract | Full text | PDF | PubMed

12.

Research article   Open Access

The fester locus in Botryllus schlosseri experiences selection

Marie L Nydam, Anthony W De Tomaso BMC Evolutionary Biology 2012, 12:249 (22 December 2012)

Abstract | Full text | PDF | PubMed

13.

Original article   Open Access

Personality and marital surplus

Shelly Lundberg IZA Journal of Labor Economics 2012, 1:3 (9 October 2012)

Abstract | Full text | PDF

14.

Research article   Open Access Highly Accessed

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

Annie R Lindgren, Molly S Pankey, Frederick G Hochberg, Todd H Oakley BMC Evolutionary Biology 2012, 12:129 (28 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

15.

Software   Open Access

URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

Brian Drawert, Stefan Engblom, Andreas Hellander BMC Systems Biology 2012, 6:76 (22 June 2012)

Abstract | Full text | PDF | PubMed

16.

Research article   Open Access

Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions

Cecilia Conaco, Pierre Neveu, Hongjun Zhou, Mary Arcila, Sandie M Degnan, Bernard M Degnan, Kenneth S Kosik BMC Genomics 2012, 13:209 (30 May 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

17.

Methodology article   Open Access

Accelerated maximum likelihood parameter estimation for stochastic biochemical systems

Bernie J Daigle, Min K Roh, Linda R Petzold, Jarad Niemi BMC Bioinformatics 2012, 13:68 (1 May 2012)

Abstract | Full text | PDF | PubMed

18.

Technical Note   Open Access Highly Accessed

WAVOS: a MATLAB toolkit for wavelet analysis and visualization of oscillatory systems

Richard Harang, Guillaume Bonnet, Linda R Petzold BMC Research Notes 2012, 5:163 (26 March 2012)

Abstract | Full text | PDF | PubMed

19.

Research article   Open Access Highly Accessed

Cnidocyte discharge is regulated by light and opsin-mediated phototransduction

David C Plachetzki, Caitlin R Fong, Todd H Oakley BMC Biology 2012, 10:17 (5 March 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Sting cell discharge in the eyeless cnidarian hydra is regulated by opsin-mediated phototransduction, a pathway used in vision in other animals.

20.

Research   Open Access Highly Accessed

Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks

Aaron M Newman, Natasha B Gallo, Lisa S Hancox, Norma J Miller, Carolyn M Radeke, Michelle A Maloney, James B Cooper, Gregory S Hageman, Don H Anderson, Lincoln V Johnson, Monte J Radeke Genome Medicine 2012, 4:16 (24 February 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Comparative transcriptome profiling of eye specimens, integrated with functionally enriched protein network analysis reveals candidate drug targets for treating age-related macular degeneration.

21.

Research article   Open Access Highly Accessed

Core module biomarker identification with network exploration for breast cancer metastasis

Ruoting Yang, Bernie J Daigle, Linda R Petzold, Francis J Doyle BMC Bioinformatics 2012, 13:12 (18 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

22.

Research article   Open Access

Effect of modeled reduced gravity conditions on bacterial morphology and physiology

Raja Vukanti, Michael A Model, Laura G Leff BMC Microbiology 2012, 12:4 (12 January 2012)

Abstract | Full text | PDF | PubMed

23.

Software   Open Access Highly Accessed

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

John H Morris, Leonard Apeltsin, Aaron M Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D Bader, Thomas E Ferrin BMC Bioinformatics 2011, 12:436 (9 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

24.

Research article   Open Access Highly Accessed

Ten new complete mitochondrial genomes of pulmonates (Mollusca: Gastropoda) and their impact on phylogenetic relationships

Tracy R White, Michele M Conrad, Roger Tseng, Shaina Balayan, Rosemary Golding, António de Frias Martins, Benoît A Dayrat BMC Evolutionary Biology 2011, 11:295 (10 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

25.

Research article   Open Access Highly Accessed

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

John B Cole, George R Wiggans, Li Ma, Tad S Sonstegard, Thomas J Lawlor, Brian A Crooker, Curtis P Van Tassell, Jing Yang, Shengwen Wang, Lakshmi K Matukumalli, Yang Da BMC Genomics 2011, 12:408 (11 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

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