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Work published with BioMed Central in the last 12 months by researchers at Indiana University at Bloomington
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Research article
Improved machine learning method for analysis of gas phase chemistry of peptides Gehrke A, Sun S, Kurgan L, Ahn N, Resing K, Kafadar K, Cios K BMC Bioinformatics 2008, 9 :515 (3 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Histopathological and molecular heterogeneity among individuals with dementia associated with Presenilin mutations Maarouf CL, Daugs ID, Spina S, Vidal R, Kokjohn TA, Patton RL, Kalback WM, Luehrs DC, Walker DG, Castaño EM, Beach TG, Ghetti B, Roher AE Molecular Neurodegeneration 2008, 3 :20 (20 November 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Cyclic changes in gene expression induced by Peg-interferon alfa-2b plus ribavirin in peripheral blood monocytes (PBMC) of hepatitis C patients during the first 10 weeks of treatment Taylor MW, Tsukahara T, McClintick JN, Edenberg HJ, Kwo P Journal of Translational Medicine 2008, 6 :66 (5 November 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
A comparative analysis of viral matrix proteins using disorder predictors Goh GKM, Dunker AK, Uversky VN Virology Journal 2008, 5 :126 (23 October 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Meeting abstract
1056 Feasibility and ultility of cardiac MRI in patients with valved bovine jugular vein conduits for right ventricular outflow tract reconstruction Ramrakhiani S, Cohen MD, Brown JW, Johnson TR Journal of Cardiovascular Magnetic Resonance 2008, 10 (Suppl 1):A181 (22 October 2008) [Abstract ] [Full text ] [PDF ]
Meeting abstract
2064 Fragmented QRS complexes on 12-lead ECG as a marker of greater myocardial infiltration by cardiac magnetic resonance gadolinium-delayed enhancement images in patients with sarcoidosis Homsi M, Alsayed L, Vaz D, Das MK, Mahenthiran J Journal of Cardiovascular Magnetic Resonance 2008, 10 (Suppl 1):A333 (22 October 2008) [Abstract ] [Full text ] [PDF ]
Research article
Breast cancer proteomics reveals correlation between estrogen receptor status and differential phosphorylation of PGRMC1 Neubauer H, Clare SE, Wozny W, Schwall GP, Poznanovi Breast Cancer Research 2008, 10 :R85 (15 October 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Methodology article
A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection Bonin A, Paris M, Després L, Tetreau G, David JP, Kilian A BMC Genomics 2008, 9 :459 (6 October 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Oral presentation
Rearfoot and knee coupling over a prolonged run in runners with patellofemoral pain syndrome Davis IS, Dierks TA Journal of Foot and Ankle Research 2008, 1 (Suppl 1):O15 (26 September 2008) [Abstract ] [Full text ] [PDF ]
Research
Paroxysmal extreme pain disorder M1627K mutation in human Nav 1.7 renders DRG neurons hyperexcitable Dib-Hajj SD, Estacion M, Jarecki BW, Tyrrell L, Fischer TZ, Lawden M, Cummins TR, Waxman SG Molecular Pain 2008, 4 :37 (19 September 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
The unfoldomics decade: an update on intrinsically disordered proteins Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN BMC Genomics 2008, 9 (Suppl 2):S1 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells Wang G, Wang Y, Feng W, Wang X, Yang JY, Zhao Y, Wang Y, Liu Y BMC Genomics 2008, 9 (Suppl 2):S22 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology Feng W, Liu Y, Wu J, Nephew KP, Huang THM, Li L BMC Genomics 2008, 9 (Suppl 2):S23 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions Ren S, Uversky VN, Chen Z, Dunker AK, Obradovic Z BMC Genomics 2008, 9 (Suppl 2):S26 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Protein intrinsic disorder toolbox for comparative analysis of viral proteins Goh GKM, Dunker AK, Uversky VN BMC Genomics 2008, 9 (Suppl 2):S4 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
BOV Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q BMC Genomics 2008, 9 :414 (15 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data Liu J, Campen A, Huang S, Peng SB, Ye X, Palakal M, Dunker AK, Xia Y, Li S BMC Medical Genomics 2008, 1 :39 (11 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Normalization of flow-mediated dilation to shear stress area under the curve eliminates the impact of variable hyperemic stimulus Padilla J, Johnson BD, Newcomer SC, Wilhite DP, Mickleborough TD, Fly AD, Mather KJ, Wallace JP Cardiovascular Ultrasound 2008, 6 :44 (4 September 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM Genome Biology 2008, 9 (Suppl 2):S11 (1 September 2008) [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model Veeramalai M, Ye Y, Godzik A BMC Bioinformatics 2008, 9 :358 (31 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Allogeneic endometrial regenerative cells: An "Off the shelf solution" for critical limb ischemia? Murphy MP, Wang H, Patel AN, Kambhampati S, Angle N, Chan K, Marleau AM, Pyszniak A, Carrier E, Ichim TE, Riordan NH Journal of Translational Medicine 2008, 6 :45 (19 August 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Proceedings
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining Huan T, Sivachenko AY, Harrison SH, Chen JY BMC Bioinformatics 2008, 9 (Suppl 9):S5 (12 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
In vitro tooth whitening effect of two medicated chewing gums compared to a whitening gum and salivaMoore M, Hasler-Nguyen N, Saroea G BMC Oral Health 2008, 8 :23 (11 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Hypothesis
Stone age diseases and modern AIDS Koch AL Virology Journal 2008, 5 :93 (7 August 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Novel genes dramatically alter regulatory network topology in amphioxus Zhang Q, Zmasek CM, Dishaw LJ, Mueller MG, Ye Y, Litman GW, Godzik A Genome Biology 2008, 9 :R123 (4 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Oral presentation
Information flow in local cortical networks is not democratic Tang A, Honey CJ, Hobbs J, Sher A, Litke AM, Sporns O, Beggs JM BMC Neuroscience 2008, 9 (Suppl 1):O3 (11 July 2008) [Abstract ] [Full text ] [PDF ]
Poster presentation
Intermittent patterns of synchronous activity in human basal ganglia Park C, Worth RM, Rubchinsky LL BMC Neuroscience 2008, 9 (Suppl 1):P150 (11 July 2008) [Abstract ] [Full text ] [PDF ]
Research
Viral complementation allows HIV-1 replication without integration Gelderblom HC, Vatakis DN, Burke SA, Lawrie SD, Bristol GC, Levy DN Retrovirology 2008, 5 :60 (9 July 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Evolution and potential function of fibrinogen-like domains across twelve Drosophila species Middha S, Wang X BMC Genomics 2008, 9 :260 (30 May 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
Calling on a million minds for community annotation in WikiProteins Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, Melton W, Barris N, Wales J, Meijssen G, Moeller E, Roes PJ, Borner K, Bairoch A Genome Biology 2008, 9 :R89 (28 May 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Evolutionary origin of regulatory regions of retrogenes in Drosophila Bai Y, Casola C, Betrán E BMC Genomics 2008, 9 :241 (22 May 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Methodology
Using GPS-enabled cell phones to track the travel patterns of adolescents Wiehe SE, Carroll AE, Liu GC, Haberkorn KL, Hoch SC, Wilson JS, Fortenberry JD International Journal of Health Geographics 2008, 7 :22 (21 May 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Review
Gram-negative antibiotic resistance: there is a price to pay Slama TG Critical Care 2008, 12 (Suppl 4):S4 (21 May 2008) [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Uncovering rate variation of lateral gene transfer during bacterial genome evolution Hao W, Golding GB BMC Genomics 2008, 9 :235 (20 May 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
PubChemSR: A search and retrieval tool for PubChem Hur J, Wild DJ Chemistry Central Journal 2008, 2 :11 (15 May 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Database
HIP2 : An online database of human plasma proteins from healthy individuals Saha S, Harrison SH, Shen C, Tang H, Radivojac P, Arnold RJ, Zhang X, Chen JY BMC Medical Genomics 2008, 1 :12 (25 April 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Short report
Release of glutamate and CGRP from trigeminal ganglion neurons: Role of calcium channels and 5-HT1 receptor signaling Xiao Y, Richter JA, Hurley JH Molecular Pain 2008, 4 :12 (16 April 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners Oldfield CJ, Meng J, Yang JY, Yang MQ, Uversky VN, Dunker AK BMC Genomics 2008, 9 (Suppl 1):S1 (20 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Using RNase sequence specificity to refine the identification of RNA-protein binding regions Wang X, Wang G, Shen C, Li L, Wang X, Mooney SD, Edenberg HJ, Sanford JR, Liu Y BMC Genomics 2008, 9 (Suppl 1):S17 (20 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome Wang G, Wang X, Wang Y, Yang JY, Li L, Nephew KP, Edenberg HJ, Zhou FC, Liu Y BMC Genomics 2008, 9 (Suppl 1):S19 (20 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Investigation of transmembrane proteins using a computational approach Yang JY, Yang MQ, Dunker AK, Deng Y, Huang X BMC Genomics 2008, 9 (Suppl 1):S7 (20 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Correspondence
The Amborella genome: an evolutionary reference for plant biology Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS Genome Biology 2008, 9 :402 (10 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Parasite-mediated disruptive selection in a natural Daphnia population Duffy MA, Brassil CE, Hall SR, Tessier AJ, Cáceres CE, Conner JK BMC Evolutionary Biology 2008, 8 :80 (7 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts Choi K, Kim S BMC Bioinformatics 2008, 9 :145 (6 March 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes Hu M, Choi K, Su W, Kim S, Yang J BMC Bioinformatics 2008, 9 :124 (26 February 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Rating neighborhoods for older adult health: results from the African American Health study Andresen EM, Malmstrom TK, Wolinsky FD, Schootman M, Miller JP, Miller DK BMC Public Health 2008, 8 :35 (25 January 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A semiparametric modeling framework for potential biomarker discovery and the development of metabonomic profiles Ghosh S, Grant DF, Dey DK, Hill DW BMC Bioinformatics 2008, 9 :38 (23 January 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Viewpoint
The role of single nucleotide polymorphisms in breast cancer metastasis Rae JM, Skaar TC, Hilsenbeck SG, Oesterreich S Breast Cancer Research 2008, 10 :301 (18 January 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Can teaching agenda-setting skills to physicians improve clinical interaction quality? A controlled intervention Rodriguez HP, Anastario MP, Frankel RM, Odigie EG, Rogers WH, von Glahn T, Safran DG BMC Medical Education 2008, 8 :3 (14 January 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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S, Stegmann W, Vogel U, Sotlar K, Wallwiener D, Kurek R, Fehm T, Cahill MA
a web-based BLAST output visualization tool