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Work published with BioMed Central in the last 12 months by researchers at Indiana University at Bloomington
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Research
Protein disorder in the human diseasome: unfoldomics of human genetic diseases Midic U, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN BMC Genomics 2009, 10 (Suppl 1):S12 (7 July 2009) [Abstract ] [Full text ] [PDF ]
Research
HAPPI: an online database of comprehensive human annotated and predicted protein interactions Chen JY, Mamidipalli SR, Huan T BMC Genomics 2009, 10 (Suppl 1):S16 (7 July 2009) [Abstract ] [Full text ] [PDF ]
Research
Reconstruct gene regulatory network using slice pattern model Wang Y, Wang G, Yang B, Tao H, Yang JY, Deng Y, Liu Y BMC Genomics 2009, 10 (Suppl 1):S2 (7 July 2009) [Abstract ] [Full text ] [PDF ]
Research
Genome-wide prediction of cis -acting RNA elements regulating tissue-specific pre-mRNA alternative splicing Wang X, Wang K, Radovich M, Wang Y, Wang G, Feng W, Sanford JR, Liu Y BMC Genomics 2009, 10 (Suppl 1):S4 (7 July 2009) [Abstract ] [Full text ] [PDF ]
Research
Unfoldomics of human diseases: linking protein intrinsic disorder with diseases Uversky VN, Oldfield CJ, Midic U, Xie H, Xue B, Vucetic S, Iakoucheva LM, Obradovic Z, Dunker AK BMC Genomics 2009, 10 (Suppl 1):S7 (7 July 2009) [Abstract ] [Full text ] [PDF ]
Meeting abstract
Prediction of peptide drift time in ion mobility-mass spectrometry Wang B, Valentine S, Raghuraman S, Plasencia M, Zhang X BMC Bioinformatics 2009, 10 (Suppl 7):A1 (25 June 2009) [Abstract ] [Full text ] [PDF ]
Research article
The influence of regional basic science campuses on medical students' choice of specialty and practice location: a historical cohort study Brokaw JJ, Mandzuk CA, Wade ME, Deal DW, Johnson MT, White GW, Wilson JS, Zollinger TW BMC Medical Education 2009, 9 :29 (6 June 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses Goh GKM, Dunker AK, Uversky VN Virology Journal 2009, 6 :69 (3 June 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Symbiotic relationship between brain structure and dynamics Rubinov M, Sporns O, van Leeuwen C, Breakspear M BMC Neuroscience 2009, 10 :55 (2 June 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
The endocannabinoid anandamide is a precursor for the signaling lipid N -arachidonoyl glycine by two distinct pathways Bradshaw HB, Rimmerman N, Hu SSJ, Benton VM, Stuart JM, Masuda K, Cravatt BF, O'Dell DK, Walker JM BMC Biochemistry 2009, 10 :14 (21 May 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx Meyer E, Aglyamova GV, Wang S, Buchanan-Carter J, Abrego D, Colbourne JK, Willis BL, Matz MV BMC Genomics 2009, 10 :219 (12 May 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Lactobacillus delbrueckii ssp. bulgaricus B-30892 can inhibit cytotoxic effects and adhesion of pathogenic Clostridium difficile to Caco-2 cellsBanerjee P, Merkel GJ, Bhunia AK Gut Pathogens 2009, 1 :8 (27 April 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Review
Non-expanded adipose stromal vascular fraction cell therapy for multiple sclerosis Riordan NH, Ichim TE, Min WP, Wang H, Solano F, Lara F, Alfaro M, Rodriguez JP, Harman RJ, Patel AN, Murphy MP, Lee RR, Minev B Journal of Translational Medicine 2009, 7 :29 (24 April 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
The components of the Daphnia pulex immune system as revealed by complete genome sequencing McTaggart SJ, Conlon C, Colbourne JK, Blaxter ML, Little TJ BMC Genomics 2009, 10 :175 (22 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
ESTPiper Tang Z, Choi JH, Hemmerich C, Sarangi A, Colbourne JK, Dong Q BMC Genomics 2009, 10 :174 (21 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
The chemoreceptor genes of the waterflea Daphnia pulex : many Grs but no Ors Peñalva-Arana DC, Lynch M, Robertson HM BMC Evolutionary Biology 2009, 9 :79 (21 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution Schurko AM, Logsdon JM, Eads BD BMC Evolutionary Biology 2009, 9 :78 (21 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Syndromic surveillance: STL for modeling, visualizing, and monitoring disease counts Hafen RP, Anderson DE, Cleveland WS, Maciejewski R, Ebert DS, Abusalah A, Yakout M, Ouzzani M, Grannis SJ BMC Medical Informatics and Decision Making 2009, 9 :21 (21 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A human polymorphism affects NEDD4L subcellular targeting by leading to two isoforms that contain or lack a C2 domain Garrone NF, Blazer-Yost BL, Weiss RB, Lalouel JM, Rohrwasser A BMC Cell Biology 2009, 10 :26 (13 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Impact of the Kenya post-election crisis on clinic attendance and medication adherence for HIV-infected children in western Kenya Vreeman RC, Nyandiko WM, Sang E, Musick BS, Braitstein P, Wiehe SE Conflict and Health 2009, 3 :5 (4 April 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Editorial
Grand challenges for cheminformatics Wild DJ Journal of Cheminformatics 2009, 1 :1 (17 March 2009) [Abstract ] [Full Text ] [PDF ]
Research
Feasibility investigation of allogeneic endometrial regenerative cells Zhong Z, Patel AN, Ichim TE, Riordan NH, Wang H, Min WP, Woods EJ, Reid M, Mansilla E, Marin GH, Drago H, Murphy MP, Minev B Journal of Translational Medicine 2009, 7 :15 (20 February 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Intrinsic disorder in Viral Proteins Genome-Linked: experimental and predictive analyses Hébrard E, Bessin Y, Michon T, Longhi S, Uversky VN, Delalande F, Van Dorsselaer A, Romero P, Walter J, Declerk N, Fargette D Virology Journal 2009, 6 :23 (16 February 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Enhanced pre-synaptic glutamate release in deep-dorsal horn contributes to calcium channel alpha-2-delta-1 protein-mediated spinal sensitization and behavioral hypersensitivity Nguyen D, Deng P, Matthews EA, Kim DS, Feng G, Dickenson AH, Xu ZC, Luo ZD Molecular Pain 2009, 5 :6 (12 February 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Evaluation of the anti-ischemic effects of D-ribose during dobutamine stress echocardiography: a pilot study Sawada SG, Lewis S, Kovacs R, Khouri S, Gradus-Pizlo I, St Cyr JA, Feigenbaum H Cardiovascular Ultrasound 2009, 7 :5 (7 February 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Poster presentation
Fragmented QRS complexes on a 12-lead ECG as a marker of non-coronary artery disease related myocardial disease by gadolinium delayed enhancement cardiac magnetic resonance imaging Homsi M, Alsayed L, Safadi A, Das MK, Mahenthiran J Journal of Cardiovascular Magnetic Resonance 2009, 11 (Suppl 1):P58 (28 January 2009) [Abstract ] [Full text ] [PDF ]
Case Report
Transient loss of consciousness caused by cryptococcal meningitis in an immunocompetent patient: a case report Wilbur L, Heyborne R Cases Journal 2009, 2 :60 (15 January 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Endocannabinoids in Alzheimer's disease and their impact on normative cognitive performance: a case-control and cohort study Koppel J, Bradshaw H, Goldberg TE, Khalili H, Marambaud P, Walker MJ, Pazos M, Gordon ML, Christen E, Davies P Lipids in Health and Disease 2009, 8 :2 (14 January 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Genome screen in familial intracranial aneurysm Foroud T, Sauerbeck L, Brown R, Anderson C, Woo D, Kleindorfer D, Flaherty ML, Deka R, Hornung R, Meissner I, Bailey-Wilson JE, Langefeld C, Rouleau G, Connolly ES, Lai D, Koller DL, Huston J, Broderick JP, the FIA Study Investigators [Familial Intracranial Aneurysm Study Investigators] BMC Medical Genetics 2009, 10 :3 (13 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Correction
Correction: Breast cancer proteomics reveals correlation between estrogen receptor status and differential phosphorylation of PGRMC1 Neubauer H, Clare SE, Wozny W, Schwall GP, Poznanovic S, Stegmann W, Vogel U, Sotlar K, Wallwiener D, Kurek R, Fehm T, Cahill MA Breast Cancer Research 2009, 11 :401 (13 January 2009) [Abstract ] [Full text ] [PDF ]
Research
Production of recombinant AAV vectors encoding insulin-like growth factor I is enhanced by interaction among AAV rep regulatory sequences Shi S, Mercer SA, Dilley R, Trippel SB Virology Journal 2009, 6 :3 (7 January 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Intracellular amyloid formation in muscle cells of ACaenorhabditis elegans : determinants and physiological role in copper detoxification Minniti AN, Rebolledo DL, Grez PM, Fadic R, Aldunate R, Volitakis I, Cherny RA, Opazo C, Masters C, Bush AI, Inestrosa NC Molecular Neurodegeneration 2009, 4 :2 (6 January 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Proteomic analysis of tumor necrosis factor- Zhou C, Nitschke AM, Xiong W, Zhang Q, Tang Y, Bloch M, Elliott S, Zhu Y, Bazzone L, Yu D, Weldon CB, Schiff R, McLachlan JA, Beckman BS, Wiese TE, Nephew KP, Shan B, Burow ME, Wang G Breast Cancer Research 2008, 10 :R105 (16 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Case report
Takotsubo cardiomyopathy in a patient with esophageal cancer: a case report Gangadhar TC, Von der Lohe E, Sawada SG, Helft PR Journal of Medical Case Reports 2008, 2 :379 (8 December 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Improved machine learning method for analysis of gas phase chemistry of peptides Gehrke A, Sun S, Kurgan L, Ahn N, Resing K, Kafadar K, Cios K BMC Bioinformatics 2008, 9 :515 (3 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Correction
Uncovering rate variation of lateral gene transfer during bacterial genome evolution Hao W, Golding GB BMC Genomics 2008, 9 :556 (25 November 2008) [Abstract ] [Full text ] [PDF ]
Research article
Histopathological and molecular heterogeneity among individuals with dementia associated with Presenilin mutations Maarouf CL, Daugs ID, Spina S, Vidal R, Kokjohn TA, Patton RL, Kalback WM, Luehrs DC, Walker DG, Castaño EM, Beach TG, Ghetti B, Roher AE Molecular Neurodegeneration 2008, 3 :20 (20 November 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Cyclic changes in gene expression induced by Peg-interferon alfa-2b plus ribavirin in peripheral blood monocytes (PBMC) of hepatitis C patients during the first 10 weeks of treatment Taylor MW, Tsukahara T, McClintick JN, Edenberg HJ, Kwo P Journal of Translational Medicine 2008, 6 :66 (5 November 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
A comparative analysis of viral matrix proteins using disorder predictors Goh GKM, Dunker AK, Uversky VN Virology Journal 2008, 5 :126 (23 October 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Meeting abstract
1056 Feasibility and ultility of cardiac MRI in patients with valved bovine jugular vein conduits for right ventricular outflow tract reconstruction Ramrakhiani S, Cohen MD, Brown JW, Johnson TR Journal of Cardiovascular Magnetic Resonance 2008, 10 (Suppl 1):A181 (22 October 2008) [Abstract ] [Full text ] [PDF ]
Meeting abstract
2064 Fragmented QRS complexes on 12-lead ECG as a marker of greater myocardial infiltration by cardiac magnetic resonance gadolinium-delayed enhancement images in patients with sarcoidosis Homsi M, Alsayed L, Vaz D, Das MK, Mahenthiran J Journal of Cardiovascular Magnetic Resonance 2008, 10 (Suppl 1):A333 (22 October 2008) [Abstract ] [Full text ] [PDF ]
Research article
Breast cancer proteomics reveals correlation between estrogen receptor status and differential phosphorylation of PGRMC1 Neubauer H, Clare SE, Wozny W, Schwall GP, Poznanovi Breast Cancer Research 2008, 10 :R85 (15 October 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Methodology article
A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection Bonin A, Paris M, Després L, Tetreau G, David JP, Kilian A BMC Genomics 2008, 9 :459 (6 October 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Oral presentation
Rearfoot and knee coupling over a prolonged run in runners with patellofemoral pain syndrome Davis IS, Dierks TA Journal of Foot and Ankle Research 2008, 1 (Suppl 1):O15 (26 September 2008) [Abstract ] [Full text ] [PDF ]
Research
Paroxysmal extreme pain disorder M1627K mutation in human Nav 1.7 renders DRG neurons hyperexcitable Dib-Hajj SD, Estacion M, Jarecki BW, Tyrrell L, Fischer TZ, Lawden M, Cummins TR, Waxman SG Molecular Pain 2008, 4 :37 (19 September 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
The unfoldomics decade: an update on intrinsically disordered proteins Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN BMC Genomics 2008, 9 (Suppl 2):S1 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells Wang G, Wang Y, Feng W, Wang X, Yang JY, Zhao Y, Wang Y, Liu Y BMC Genomics 2008, 9 (Suppl 2):S22 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology Feng W, Liu Y, Wu J, Nephew KP, Huang THM, Li L BMC Genomics 2008, 9 (Suppl 2):S23 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions Ren S, Uversky VN, Chen Z, Dunker AK, Obradovic Z BMC Genomics 2008, 9 (Suppl 2):S26 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Protein intrinsic disorder toolbox for comparative analysis of viral proteins Goh GKM, Dunker AK, Uversky VN BMC Genomics 2008, 9 (Suppl 2):S4 (16 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
BOV Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q BMC Genomics 2008, 9 :414 (15 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data Liu J, Campen A, Huang S, Peng SB, Ye X, Palakal M, Dunker AK, Xia Y, Li S BMC Medical Genomics 2008, 1 :39 (11 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Normalization of flow-mediated dilation to shear stress area under the curve eliminates the impact of variable hyperemic stimulus Padilla J, Johnson BD, Newcomer SC, Wilhite DP, Mickleborough TD, Fly AD, Mather KJ, Wallace JP Cardiovascular Ultrasound 2008, 6 :44 (4 September 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM Genome Biology 2008, 9 (Suppl 2):S11 (1 September 2008) [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model Veeramalai M, Ye Y, Godzik A BMC Bioinformatics 2008, 9 :358 (31 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Allogeneic endometrial regenerative cells: An "Off the shelf solution" for critical limb ischemia? Murphy MP, Wang H, Patel AN, Kambhampati S, Angle N, Chan K, Marleau AM, Pyszniak A, Carrier E, Ichim TE, Riordan NH Journal of Translational Medicine 2008, 6 :45 (19 August 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Proceedings
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining Huan T, Sivachenko AY, Harrison SH, Chen JY BMC Bioinformatics 2008, 9 (Suppl 9):S5 (12 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
In vitro tooth whitening effect of two medicated chewing gums compared to a whitening gum and salivaMoore M, Hasler-Nguyen N, Saroea G BMC Oral Health 2008, 8 :23 (11 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Hypothesis
Stone age diseases and modern AIDS Koch AL Virology Journal 2008, 5 :93 (7 August 2008) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Novel genes dramatically alter regulatory network topology in amphioxus Zhang Q, Zmasek CM, Dishaw LJ, Mueller MG, Ye Y, Litman GW, Godzik A Genome Biology 2008, 9 :R123 (4 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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by Indiana University at Bloomington
a web-based analysis pipeline for expressed sequence tags
-transgenic Caenorhabditis elegans: determinants and physiological role in copper detoxification
resistant human breast cancer cells reveals a MEK5/Erk5-mediated epithelial-mesenchymal transition phenotype
S, Stegmann W, Vogel U, Sotlar K, Wallwiener D, Kurek R, Fehm T, Cahill MA