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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, Santa Cruz

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26.

Research   Open Access

Electromagnetic compatibility of implantable neurostimulators to RFID emitters

Oxana S Pantchenko, Seth J Seidman, Joshua W Guag, Donald M Witters, Curt L Sponberg BioMedical Engineering OnLine 2011, 10:50 (9 June 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

27.

Research article   Open Access Highly Accessed

Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species

José Tavera, Arturo P, Eduardo F Balart, Giacomo Bernardi BMC Evolutionary Biology 2012, 12:57 (26 April 2012)

Abstract | Full text | PDF | PubMed

28.

Research article   Open Access Highly Accessed

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes

Danielle G Lemay, William F Martin, Angie S Hinrichs, Monique Rijnkels, J Bruce German, Ian Korf, Katherine S Pollard BMC Bioinformatics 2012, 13:253 (28 September 2012)

Abstract | Full text | PDF | PubMed

29.

Research   Open Access Highly Accessed

Analysis of induced electrical currents from magnetic field coupling inside implantable neurostimulator leads

Oxana S Pantchenko, Seth J Seidman, Joshua W Guag BioMedical Engineering OnLine 2011, 10:94 (21 October 2011)

Abstract | Full text | PDF | PubMed

30.

Proceedings   Open Access

Combining heterogeneous data sources for accurate functional annotation of proteins

Artem Sokolov, Christopher Funk, Kiley Graim, Karin Verspoor, Asa Ben-Hur BMC Bioinformatics 2013, 14(Suppl 3):S10 (28 February 2013)

Abstract | Full text | PDF | PubMed

31.

Research   Open Access Highly Accessed

Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NFκB and microRNA network

Bi-Dar Wang, Christina Kline, Danielle M Pastor, Thomas L Olson, Bryan Frank, Truong Luu, Arun K Sharma, Gavin Robertson, Matthew T Weirauch, Steven R Patierno, Joshua M Stuart, Rosalyn B Irby, Norman H Lee Molecular Cancer 2010, 9:98 (30 April 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

32.

Short report   Open Access

MicroRNAs can regulate human APP levels

Neha Patel, David Hoang, Nathan Miller, Sara Ansaloni, Qihong Huang, Jack T Rogers, Jeremy C Lee, Aleister J Saunders Molecular Neurodegeneration 2008, 3:10 (6 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

33.

Research article   Open Access Highly Accessed

Engineering proteinase K using machine learning and synthetic genes

Jun Liao, Manfred K Warmuth, Sridhar Govindarajan, Jon E Ness, Rebecca P Wang, Claes Gustafsson, Jeremy Minshull BMC Biotechnology 2007, 7:16 (26 March 2007)

Abstract | Full text | PDF | PubMed

34.

Research article   Open Access

Association between the plasma/whole blood lead ratio and history of spontaneous abortion: a nested cross-sectional study

Héctor Lamadrid-Figueroa, Martha M Téllez-Rojo, Mauricio Hernández-Avila, Belem Trejo-Valdivia, Maritsa Solano-González, Adriana Mercado-Garcia, Donald Smith, Howard Hu, Robert O Wright BMC Pregnancy and Childbirth 2007, 7:22 (27 September 2007)

Abstract | Full text | PDF | PubMed

35.

Research   Open Access

Lineage divergence detected in the malaria vector Anopheles marajoara (Diptera: Culicidae) in Amazonian Brazil

Sascha N McKeon, Margaret A Lehr, Richard C Wilkerson, John F Ruiz, Maria A Sallum, Jose BP Lima, Marinete M Povoa, Jan E Conn Malaria Journal 2010, 9:271 (7 October 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Genetic analysis plays an increasingly important role in identifying changes in population structure and elucidating taxonomic status and phylogenetic relationships. Anopheles marajoara, a local and regionally important vector in lowland rainforest: phylogenetic analysis detected paraphyly in the neotropical malaria vector Anopheles marajoara.

36.

Research   Open Access Highly Accessed

Fast-evolving noncoding sequences in the human genome

Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas, Catherine E Ingle, Claude Beazley, Webb Miller, Matthew E Hurles, Emmanouil T Dermitzakis Genome Biology 2007, 8:R118 (19 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Over 1,300 conserved non-coding sequences were identified that appear to have undergone dramatic human-specific changes in selective pressures; these are enriched in recent segmental duplications, suggesting a recent change in selective constraint following duplication.

37.

Research article   Open Access Highly Accessed

Spawning salmon disrupt trophic coupling between wolves and ungulate prey in coastal British Columbia

Chris T Darimont, Paul C Paquet, Thomas E Reimchen BMC Ecology 2008, 8:14 (2 September 2008)

Abstract | Full text | PDF | PubMed |  Editor’s summary

In spring and summer Canadian wolves feed on deer, but wolf fecal and hair samples reveal that in autumn their feeding preference shifts to salmon as spawning salmon numbers increase, irrespective of the availability of deer.

38.

Research   Open Access

Efficient in vitro RNA interference and immunofluorescence-based phenotype analysis in a human parasitic nematode, Brugia malayi

Frédéric Landmann, Jeremy M Foster, Barton E Slatko, William Sullivan Parasites & Vectors 2012, 5:16 (13 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This manuscript demonstrates the efficient use of heterogeneous short interfering RNA mixes for performing RNAi in the parasitic nematode Brugia malayi and immunofluorescence-based analysis of cellular phenotypes. Image: Defective 2 cell embryo of Brugia malayi following RNAi targeting the polarity-determining gene, par-1.

39.

Software   Open Access

Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization

Krishna M Roskin, Benedict Paten, David Haussler BMC Bioinformatics 2011, 12:144 (10 May 2011)

Abstract | Full text | PDF | PubMed

40.

Review   Free Highly Accessed

Tumour-stromal interactions: Role of the stroma in mammary development

Gary B Silberstein Breast Cancer Res 2001, 3:218-223 (22 March 2001)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

41.

Research article   Open Access Highly Accessed

Ocean climate and seal condition

Burney J Le Boeuf, Daniel E Crocker BMC Biology 2005, 3:9 (28 March 2005)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The condition of elephant seal pups in the Pacific is negatively affected by warmer oceans, such as those seen in El Nino years, due to a change in prey distribution which decreases the foraging success of females.

42.

Research article   Open Access

The chemical-in-plug bacterial chemotaxis assay is prone to false positive responses

Jun Li, Alvin C Go, Mandy J Ward, Karen M Ottemann BMC Research Notes 2010, 3:77 (16 March 2010)

Abstract | Full text | PDF | PubMed

43.

Research article   Open Access Highly Accessed

Organochloride pesticides in California sea lions revisited

Burney J Le Boeuf, John P Giesy, Kurunthachalam Kannan, Natsuko Kajiwara, Shinsuke Tanabe, Cathy Debier BMC Ecology 2002, 2:11 (12 December 2002)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

DDT levels in the blubber of California sea lions have decreased since 1970, but current levels of PCB's are still high enough to potentially cause immunotoxicity or endocrine disruption.

44.

Research article   Open Access Highly Accessed

Insulin-like growth factor (IGF)-I obliterates the pregnancy-associated protection against mammary carcinogenesis in rats: evidence that IGF-I enhances cancer progression through estrogen receptor-α activation via the mitogen-activated protein kinase pathway

Gudmundur Thordarson, Nicole Slusher, Harriet Leong, Dafne Ochoa, Lakshmanaswamy Rajkumar, Raphael Guzman, Satyabrata Nandi, Frank Talamantes Breast Cancer Res 2004, 6:R423-R436 (4 June 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

45.

Methodology article   Open Access Highly Accessed

A search engine to identify pathway genes from expression data on multiple organisms

Chunnuan Chen, Matthew T Weirauch, Corey C Powell, Alexander C Zambon, Joshua M Stuart BMC Systems Biology 2007, 1:20 (4 May 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The Multiple-Species Gene Recommender takes a query genetic pathway and scans expression data using a probabilistic search of six species to find genes that are coregulated with the query genes.

46.

Research article   Open Access

Comparing the adaptive landscape across trait types: larger QTL effect size in traits under biotic selection

Allison M Louthan, Kathleen M Kay BMC Evolutionary Biology 2011, 11:60 (7 March 2011)

Abstract | Full text | PDF | PubMed | F1000 Biology

47.

Research article   Open Access

The new anti-actin agent dihydrohalichondramide reveals fenestrae-forming centers in hepatic endothelial cells

Filip Braet, Ilan Spector, Nava Shochet, Phillip Crews, Tatsuo Higa, Eline Menu, Ronald de Zanger, Eddie Wisse BMC Cell Biology 2002, 3:7 (21 March 2002)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

48.

Research   Open Access

Robust flash denoising/deblurring by iterative guided filtering

Hae-Jong Seo, Peyman Milanfar EURASIP Journal on Advances in Signal Processing 2012, 2012:3 (6 January 2012)

Abstract | Full text | PDF

49.

Proceedings   Open Access

Prioritizing single-nucleotide variations that potentially regulate alternative splicing

Mingxiang Teng, Yadong Wang, Guohua Wang, Jeesun Jung, Howard J Edenberg, Jeremy R Sanford, Yunlong Liu BMC Proceedings 2011, 5(Suppl 9):S40 (29 November 2011)

Abstract | Full text | PDF

50.

Research article   Open Access

Bayesian semiparametric regression models to characterize molecular evolution

Saheli Datta, Abel Rodriguez, Raquel Prado BMC Bioinformatics 2012, 13:278 (30 October 2012)

Abstract | Full text | PDF | PubMed

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