BioMed Central | Members | University of California, Santa Cruz

Submit a manuscript Register Contact us

Institution search

Search by institution name/city

Members

Australia (21)
Austria (6)
Belgium (2)
Brazil (4)
Burkina Faso (1)
Canada (27)
Central African Republic (1)
China (3)
Cyprus (3)
Czech Republic (1)
Denmark (1)
Ethiopia (1)
Finland (6)
France (6)
Germany (48)
Ghana (3)
Greece (1)
Hong Kong (2)
Hungary (1)
India (7)
Ireland (1)
Israel (1)
Italy (13)
Japan (1)
Kenya (2)
Korea, South (1)
Lebanon (1)
Lithuania (1)
Luxembourg (1)
Madagascar (1)
Malaysia (3)
Mexico (1)
Morocco (2)
Netherlands (10)
New Zealand (1)
Nigeria (2)
Norway (3)
Poland (1)
Portugal (1)
Romania (1)
South Africa (6)
Spain (14)
Sweden (9)
Switzerland (10)
Taiwan (3)
Tanzania (2)
Thailand (1)
Trinidad and Tobago (1)
Uganda (1)
United Kingdom (41)
United States of America (153)

Advertisement

Supporter Member - University of California, Santa Cruz

Offering high-quality programs in letters, arts, and science.

http://www.ucsc.edu

Research staff and students at University of California, Santa Cruz:

Do you realize that you will get a 15% discount on the article-processing charges of all research articles accepted for publication in journals published by BioMed Central, Chemistry Central and SpringerOpen? Read more information about publishing your articles with us.

Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, Santa Cruz

Display/download options Articles per page: 25 | 50 | 100

Display options

Editor's summary Citation

Download options

Send
To

	1.	Proceedings Combining heterogeneous data sources for accurate functional annotation of proteins Artem Sokolov, Christopher Funk, Kiley Graim, Karin Verspoor, Asa Ben-Hur BMC Bioinformatics 2013, 14(Suppl 3):S10 (28 February 2013) Abstract \| Full text \| PDF
	2.	Research article Bayesian semiparametric regression models to characterize molecular evolution Saheli Datta, Abel Rodriguez, Raquel Prado BMC Bioinformatics 2012, 13:278 (30 October 2012) Abstract \| Full text \| PDF \| PubMed
	3.	Research article G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes Danielle G Lemay, William F Martin, Angie S Hinrichs, Monique Rijnkels, J Bruce German, Ian Korf, Katherine S Pollard BMC Bioinformatics 2012, 13:253 (28 September 2012) Abstract \| Full text \| PDF \| PubMed
	4.	Open letter An encyclopedia of mouse DNA elements (Mouse ENCODE) John A Stamatoyannopoulos, Michael Snyder, Ross Hardison, Bing Ren, Thomas Gingeras, David M Gilbert, Mark Groudine, Michael Bender, Rajinder Kaul, Theresa Canfield, Erica Giste, Audra Johnson, Mia Zhang, Gayathri Balasundaram, Rachel Byron, Vaughan Roach, Peter J Sabo, Richard Sandstrom, A Sandra Stehling, Robert E Thurman, Sherman M Weissman, Philip Cayting, Manoj Hariharan, Jin Lian, Yong Cheng, Stephen G Landt, Zhihai Ma, Barbara J Wold, Job Dekker et al. Genome Biology 2012, 13:418 (13 August 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome
	5.	Research article Composition and organization of active centromere sequences in complex genomes Karen E Hayden, Huntington F Willard BMC Genomics 2012, 13:324 (20 July 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Review Tissue sampling methods and standards for vertebrate genomics Pamela BY Wong, Edward O Wiley, Warren E Johnson, Oliver A Ryder, Stephen J O’Brien, David Haussler, Klaus-Peter Koepfli, Marlys L Houck, Polina Perelman, Gabriela Mastromonaco, Andrew C Bentley, Byrappa Venkatesh, Ya-ping Zhang, Robert W Murphy, GigaScience 2012, 1:8 (12 July 2012) Abstract \| Full text \| PDF
	7.	Research article Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species José Tavera, Arturo P, Eduardo F Balart, Giacomo Bernardi BMC Evolutionary Biology 2012, 12:57 (26 April 2012) Abstract \| Full text \| PDF \| PubMed
	8.	Methodology article Molecular probe technology detects bacteria without culture Richard W Hyman, Robert P St Onge, Hyunsung Kim, John S Tamaresis, Molly Miranda, Ana Aparicio, Marilyn Fukushima, Nader Pourmand, Linda C Giudice, Ronald W Davis BMC Microbiology 2012, 12:29 (9 March 2012) Abstract \| Full text \| PDF \| PubMed
	9.	Open letter Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes John A St John, Edward L Braun, Sally R Isberg, Lee G Miles, Amanda Y Chong, Jaime Gongora, Pauline Dalzell, Christopher Moran, Bertrand Bed'Hom, Arkhat Abzhanov, Shane C Burgess, Amanda M Cooksey, Todd A Castoe, Nicholas G Crawford, Llewellyn D Densmore, Jennifer C Drew, Scott V Edwards, Brant C Faircloth, Matthew K Fujita, Matthew J Greenwold, Federico G Hoffmann, Jonathan M Howard, Taisen Iguchi, Daniel E Janes, Shahid Khan, Satomi Kohno, AP Jason de Koning, Stacey L Lance, Fiona M McCarthy, John E McCormack et al. Genome Biology 2012, 13:415 (31 January 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary An Open Letter describing the project to sequence the genomes of the saltwater crocodile, the American alligator and the Indian gharial
	10.	Research Efficient in vitro RNA interference and immunofluorescence-based phenotype analysis in a human parasitic nematode, Brugia malayi Frédéric Landmann, Jeremy M Foster, Barton E Slatko, William Sullivan Parasites & Vectors 2012, 5:16 (13 January 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary This manuscript demonstrates the efficient use of heterogeneous short interfering RNA mixes for performing RNAi in the parasitic nematode Brugia malayi and immunofluorescence-based analysis of cellular phenotypes. Image: Defective 2 cell embryo of Brugia malayi following RNAi targeting the polarity-determining gene, par-1.
	11.	Research Robust flash denoising/deblurring by iterative guided filtering Hae-Jong Seo, Peyman Milanfar EURASIP Journal on Advances in Signal Processing 2012, 2012:3 (6 January 2012) Abstract \| Full text \| PDF
	12.	Research OpenKnowledge for peer-to-peer experimentation in protein identification by MS/MS Siu-wai Leung, Xueping Quan, Paolo Besana, Qian Li, Mark Collins, Dietlind Gerloff, Dave Robertson Automated Experimentation 2011, 3:3 (22 December 2011) Abstract \| Full text \| PDF \| PubMed
	13.	Software NanoStriDE: normalization and differential expression analysis of NanoString nCounter data Christopher D Brumbaugh, Hyunsung J Kim, Mario Giovacchini, Nader Pourmand BMC Bioinformatics 2011, 12:479 (16 December 2011) Abstract \| Full text \| PDF \| PubMed
	14.	Proceedings Prioritizing single-nucleotide variations that potentially regulate alternative splicing Mingxiang Teng, Yadong Wang, Guohua Wang, Jeesun Jung, Howard J Edenberg, Jeremy R Sanford, Yunlong Liu BMC Proceedings 2011, 5(Suppl 9):S40 (29 November 2011) Abstract \| Full text \| PDF
	15.	Research Analysis of induced electrical currents from magnetic field coupling inside implantable neurostimulator leads Oxana S Pantchenko, Seth J Seidman, Joshua W Guag BioMedical Engineering OnLine 2011, 10:94 (21 October 2011) Abstract \| Full text \| PDF \| PubMed
	16.	Research Electromagnetic compatibility of implantable neurostimulators to RFID emitters Oxana S Pantchenko, Seth J Seidman, Joshua W Guag, Donald M Witters, Curt L Sponberg BioMedical Engineering OnLine 2011, 10:50 (9 June 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	17.	Primary research MHC class I-related chain A and B ligands are differentially expressed in human cervical cancer cell lines Susana del Toro-Arreola, Naela Arreygue-Garcia, Adriana Aguilar-Lemarroy, Angel Cid-Arregui, Miriam Jimenez-Perez, Jesse Haramati, Patricio Barros-Nuñez, Oscar Gonzalez-Ramella, Alicia del Toro-Arreola, Pablo Ortiz-Lazareno, Georgina Hernandez-Flores, Alejandro Bravo-Cuellar, Adrian Daneri-Navarro, Luis F Jave-Suarez Cancer Cell International 2011, 11:15 (1 June 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	18.	Software Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization Krishna M Roskin, Benedict Paten, David Haussler BMC Bioinformatics 2011, 12:144 (10 May 2011) Abstract \| Full text \| PDF \| PubMed
	19.	Research Discovery of permuted and recently split transfer RNAs in Archaea Patricia P Chan, Aaron E Cozen, Todd M Lowe Genome Biology 2011, 12:R38 (13 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Discovery of novel split and permuted archaeal tRNAs argues against a single, early origin in Archaea
	20.	Research article Comparing the adaptive landscape across trait types: larger QTL effect size in traits under biotic selection Allison M Louthan, Kathleen M Kay BMC Evolutionary Biology 2011, 11:60 (7 March 2011) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology
	21.	Research Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2 Kohta Ikegami, Thea A Egelhofer, Susan Strome, Jason D Lieb Genome Biology 2010, 11:R120 (23 December 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A modENCODE survey of chromosome interactions with the inner nuclear membrane finds interacting regions are distal and gene sparse
	22.	Research *Lineage divergence detected in the malaria vector Anopheles marajoara* (Diptera: Culicidae) in Amazonian Brazil** Sascha N McKeon, Margaret A Lehr, Richard C Wilkerson, John F Ruiz, Maria A Sallum, Jose BP Lima, Marinete M Povoa, Jan E Conn Malaria Journal 2010, 9:271 (7 October 2010) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Genetic analysis plays an increasingly important role in identifying changes in population structure and elucidating taxonomic status and phylogenetic relationships. Anopheles marajoara, a local and regionally important vector in lowland rainforest: phylogenetic analysis detected paraphyly in the neotropical malaria vector Anopheles marajoara.
	23.	Research Article CARNIVORE: A Disruption-Tolerant System for Studying Wildlife Matthew Rutishauser, Vladislav Petkov, Jay Boice, Katia Obraczka, Patrick Mantey, TerrieM Williams, ChristopherC Wilmers EURASIP Journal on Wireless Communications and Networking 2011, 2011:968046 (30 September 2010) Abstract \| Full text \| PDF
	24.	Research *Trans-generational epigenetic regulation of C. elegans* primordial germ cells** Hirofumi Furuhashi, Teruaki Takasaki, Andreas Rechtsteiner, Tengguo Li, Hiroshi Kimura, Paula M Checchi, Susan Strome, William G Kelly Epigenetics & Chromatin 2010, 3:15 (12 August 2010) Abstract \| Full text \| PDF \| PubMed
	25.	Research Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NFκB and microRNA network Bi-Dar Wang, Christina Kline, Danielle M Pastor, Thomas L Olson, Bryan Frank, Truong Luu, Arun K Sharma, Gavin Robertson, Matthew T Weirauch, Steven R Patierno, Joshua M Stuart, Rosalyn B Irby, Norman H Lee Molecular Cancer 2010, 9:98 (30 April 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central