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201.

Oral presentation   Open Access

HTLV-1: epidemiology and pathogenesis of tropical spastic paraparesis/HTLV-1 associated myelopathy

Antoine Gessain BMC Proceedings 2008, 2(Suppl 1):S17 (23 September 2008)

Full text | PDF

202.

Oral presentation   Open Access

Cell and tissue tropisms of Chikungunya virus and its dissemination to the central nervous system

Thérése Couderc, Fabrice Chrétien, Clémentine Schilte, Olivier Disson, Alain Michault, Matthew L Albert, Marc Lecuit BMC Proceedings 2008, 2(Suppl 1):S7 (23 September 2008)

Full text | PDF

203.

Poster presentation   Open Access

Pro- and anti-apoptotic signaling pathways in poliovirus-infected neuronal cells

Arnaud Autret, Sandra Martin-Latil, Cynthia Brisac, Laurence Mousson, Florence Colbère-Garapin, Jérôme Estaquier, Bruno Blondel BMC Proceedings 2008, 2(Suppl 1):P4 (23 September 2008)

Full text | PDF

204.

Research article   Open Access

Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia

Claude Lamarre, Sergueï Sokol, Jean-Paul Debeaupuis, Christine Henry, Céline Lacroix, Philippe Glaser, Jean-Yves Coppée, Jean-Marie François, Jean-Paul Latgé BMC Genomics 2008, 9:417 (16 September 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

205.

Methodology article   Open Access Highly Accessed

Multiple displacement amplification for complex mixtures of DNA fragments

Muhammad Shoaib, Sonia Baconnais, Undine Mechold, Eric Le Cam, Marc Lipinski, Vasily Ogryzko BMC Genomics 2008, 9:415 (15 September 2008)

Abstract | Full text | PDF | PubMed

206.

Research   Open Access

Var2CSA DBL6-epsilon domain expressed in HEK293 induces limited cross-reactive and blocking antibodies to CSA binding parasites

Pablo Fernandez, Nicola K Viebig, Sébastien Dechavanne, Catherine Lépolard, Jürg Gysin, Artur Scherf, Benoit Gamain Malaria Journal 2008, 7:170 (4 September 2008)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Experiments designed to express domains of the var2csa protein, to raise antisera in mice and examine their ability to recognize the protein on infected cells and to inhibit parasite binding.

207.

Research   Open Access Highly Accessed

Gene expression regulation in the context of mouse interspecific mosaic genomes

David L'Hôte, Catherine Serres, Reiner A Veitia, Xavier Montagutelli, Ahmad Oulmouden, Daniel Vaiman Genome Biology 2008, 9:R133 (27 August 2008)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The testis transcriptome of mouse strains containing homozygous segments of Mus spretus origin in a Mus musculus background was analyzed.

208.

Research   Open Access

Maternal mortality in South Africa in 2001: From demographic census to epidemiological investigation

Michel Garenne, Robert McCaa, Kourtoum Nacro Population Health Metrics 2008, 6:4 (21 August 2008)

Abstract | Full text | PDF | PubMed

209.

Research article   Open Access

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate

Onguma Natalang, Emmanuel Bischoff, Guillaume Deplaine, Caroline Proux, Marie-Agnès Dillies, Odile Sismeiro, Ghislaine Guigon, Serge Bonnefoy, Jintana Patarapotikul, Odile Mercereau-Puijalon, Jean-Yves Coppée, Peter H David BMC Genomics 2008, 9:388 (18 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

210.

Research   Open Access Highly Accessed

Restriction by APOBEC3 proteins of endogenous retroviruses with an extracellular life cycle: ex vivo effects and in vivo "traces" on the murine IAPE and human HERV-K elements

Cécile Esnault, Stéphane Priet, David Ribet, Odile Heidmann, Thierry Heidmann Retrovirology 2008, 5:75 (14 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

211.

Research article   Open Access Highly Accessed

Genomic analysis of the TRIM family reveals two groups of genes with distinct evolutionary properties

Marco Sardiello, Stefano Cairo, Bianca Fontanella, Andrea Ballabio, Germana Meroni BMC Evolutionary Biology 2008, 8:225 (1 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

212.

Research article   Open Access

Spx mediates oxidative stress regulation of the methionine sulfoxide reductases operon in Bacillus subtilis

CongHui You, Agnieszka Sekowska, Olivera Francetic, Isabelle Martin-Verstraete, YiPing Wang, Antoine Danchin BMC Microbiology 2008, 8:128 (28 July 2008)

Abstract | Full text | PDF | PubMed

213.

Research article   Open Access

Phagocytosis of Aspergillus fumigatus conidia by primary nasal epithelial cells in vitro

Françoise Botterel, Karine Gross, Oumaïma Ibrahim-Granet, Khaled Khoufache, Virginie Escabasse, André Coste, Catherine Cordonnier, Estelle Escudier, Stéphane Bretagne BMC Microbiology 2008, 8:97 (18 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

214.

Research article   Open Access Highly Accessed

Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium

Lionel Frangeul, Philippe Quillardet, Anne-Marie Castets, Jean-François Humbert, Hans CP Matthijs, Diego Cortez, Andrew Tolonen, Cheng-Cai Zhang, Simonetta Gribaldo, Jan-Christoph Kehr, Yvonne Zilliges, Nadine Ziemert, Sven Becker, Emmanuel Talla, Amel Latifi, Alain Billault, Anthony Lepelletier, Elke Dittmann, Christiane Bouchier, Nicole Tandeau de Marsac BMC Genomics 2008, 9:274 (5 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The cyanobacterium Microcystis aeruginosa can produce toxic blooms and lives in a wide range of freshwater ecosystems, which is reflected in a highly plastic genome that includes many transposases and potentially novel restriction enzymes.

215.

Software   Open Access

Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA

Benjamin Bardiaux, Aymeric Bernard, Wolfgang Rieping, Michael Habeck, Thérèse E Malliavin, Michael Nilges BMC Structural Biology 2008, 8:30 (5 June 2008)

Abstract | Full text | PDF | PubMed

216.

Research   Open Access

Longitudinal study of Plasmodium falciparum and Plasmodium vivax in a Karen population in Thailand

Waraphon Phimpraphi, Richard E Paul, Surapon Yimsamran, Supalarp Puangsa-art, Nipon Thanyavanich, Wanchai Maneeboonyang, Sutthiporn Prommongkol, Samarn Sornklom, Wutthichai Chaimungkun, Irwin F Chavez, Herve Blanc, Sornchai Looareesuwan, Anavaj Sakuntabhai, Pratap Singhasivanon Malaria Journal 2008, 7:99 (2 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A study looking at interactions between the two parasites and the potential interference of control interventions with distribution patterns

217.

Research   Open Access Highly Accessed

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

Alexis Dufresne, Martin Ostrowski, David J Scanlan, Laurence Garczarek, Sophie Mazard, Brian P Palenik, Ian T Paulsen, Nicole de Marsac, Patrick Wincker, Carole Dossat, Steve Ferriera, Justin Johnson, Anton F Post, Wolfgang R Hess, Frédéric Partensky Genome Biology 2008, 9:R90 (28 May 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Local niche occupancy of marine Synechococcus lineages is facilitated by lateral gene transfers. Genomic islands act as repositories for these transferred genes.

218.

Research article   Open Access Highly Accessed

Genomics of an extreme psychrophile, Psychromonas ingrahamii

Monica Riley, James T Staley, Antoine Danchin, Ting Zhang Wang, Thomas S Brettin, Loren J Hauser, Miriam L Land, Linda S Thompson BMC Genomics 2008, 9:210 (6 May 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

The genome of Psychromonas ingrahamii, an extreme psychrophilic bacterium that grows optimally at -12 degrees Celsius in sea ice, has a number of unique gene clusters and many features linked to cold adaptation.

219.

Research   Open Access

Transcription analysis in the MeLiM swine model identifies RACK1 as a potential marker of malignancy for human melanocytic proliferation

Giorgia Egidy, Sophia Julé, Philippe Bossé, Florence Bernex, Claudine Geffrotin, Silvia Vincent-Naulleau, Vratislav Horak, Xavier Sastre-Garau, Jean-Jacques Panthier Molecular Cancer 2008, 7:34 (28 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

220.

Methodology   Open Access Highly Accessed

Evaluation of FRET real-time PCR assay for rapid detection and differentiation of Plasmodium species in returning travellers and migrants

Innocent Safeukui, Pascal Millet, Sébastien Boucher, Laurence Melinard, Frédéric Fregeville, Marie-Catherine Receveur, Thierry Pistone, Pierre Fialon, Philippe Vincendeau, Hervé Fleury, Denis Malvy Malaria Journal 2008, 7:70 (28 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The two features of note for this method are the differentiation of P. falciparum infections from other Plasmodium species and the fact that the results are obtained in 90 minutes from sample preparation to result interpretation

221.

Research article   Open Access Highly Accessed

Use of cluster-graphs from spoligotyping data to study genotype similarities and a comparison of three indices to quantify recent tuberculosis transmission among culture positive cases in French Guiana during a eight year period

Vanina Guernier, Christophe Sola, Karine Brudey, Jean-François Guégan, Nalin Rastogi BMC Infectious Diseases 2008, 8:46 (14 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

222.

Research   Open Access Highly Accessed

Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation

Jonathan Berthon, Diego Cortez, Patrick Forterre Genome Biology 2008, 9:R71 (9 April 2008)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Specific functional interactions of proteins involved in DNA replication and/or DNA repair or transcription might occur in Archaea, suggesting a previously unrecognized regulatory network coupling DNA replication and translation, which might also exist in Eukarya.

223.

Research   Open Access

Distinct efficacy of HIV-1 entry inhibitors to prevent cell-to-cell transfer of R5 and X4 viruses across a human placental trophoblast barrier in a reconstitution model in vitro

Ahidjo Ayouba, Claude Cannou, Marie-Thérèse Nugeyre, Françoise Barré-Sinoussi, Elisabeth Menu Retrovirology 2008, 5:31 (31 March 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

224.

Research   Open Access Highly Accessed

The impact of the neisserial DNA uptake sequences on genome evolution and stability

Todd J Treangen, Ole Ambur, Tone Tonjum, Eduardo PC Rocha Genome Biology 2008, 9:R60 (26 March 2008)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A study of the origin and distribution of the abundant short DNA uptake sequence (DUS) in six genomes of Neisseria suggests that transformation and recombination are tightly linked in evolution and that recombination has a key role in the establishment of DUS.

225.

Research   Open Access Highly Accessed

Functional diversity of HIV-1 envelope proteins expressed by contemporaneous plasma viruses

Tamara Nora, Francine Bouchonnet, Béatrice Labrosse, Charlotte Charpentier, Fabrizio Mammano, François Clavel, Allan J Hance Retrovirology 2008, 5:23 (29 February 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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