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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Pennsylvania

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1.

Research article   Open Access

Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis

Emily Greenfest-Allen, Jeffrey Malik, James Palis, Christian J Stoeckert BMC Systems Biology 2013, 7:38 (15 May 2013)

Abstract | Provisional PDF | PubMed

2.

Research   Open Access

Topography of FUS pathology distinguishes late-onset BIBD from aFTLD-U

Edward B Lee, Jenny Russ, Hyunjoo Jung, Lauren B Elman, Lama M Chahine, Daniel Kremens, Bruce L Miller, H Branch Coslett, John Q Trojanowski, Vivianna M Van Deerlin, Leo F McCluskey Acta Neuropathologica Communications 2013, 1:9 (9 May 2013)

Abstract | Provisional PDF

3.

Research article   Open Access Highly Accessed

Mortality risk of black women and white women with invasive breast cancer by hormone receptors, HER2, and p53 status

Huiyan Ma, Yani Lu, Kathleen E Malone, Polly A Marchbanks, Dennis M Deapen, Robert Spirtas, Ronald T Burkman, Brian L Strom, Jill A McDonald, Suzanne G Folger, Michael S Simon, Jane Sullivan-Halley, Michael F Press, Leslie Bernstein BMC Cancer 2013, 13:225 (4 May 2013)

Abstract | Full text | PDF | PubMed

4.

Research   Open Access

The impact of sex on brain responses to smoking cues: a perfusion fMRI study

Reagan R Wetherill, Kimberly A Young, Kanchana Jagannathan, Joshua Shin, Charles P O’Brien, Anna Rose Childress, Teresa R Franklin Biology of Sex Differences 2013, 4:9 (29 April 2013)

Abstract | Full text | PDF | PubMed

5.

Research article   Open Access

Mammogram image quality as a potential contributor to disparities in breast cancer stage at diagnosis: an observational study

Garth H Rauscher, Emily F Conant, Jenna A Khan, Michael L Berbaum BMC Cancer 2013, 13:208 (26 April 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access

Vascular endothelial growth factor (VEGF) expression in locally advanced prostate cancer: secondary analysis of radiation therapy oncology group (RTOG) 8610

Larry Pan, Seunghee Baek, Pamela R Edmonds, Mack Roach, Harvey Wolkov, Satish Shah, Alan Pollack, M Elizabeth Hammond, Adam P Dicker Radiation Oncology 2013, 8:100 (25 April 2013)

Abstract | Full text | PDF | PubMed

7.

Research article   Open Access

Genomic deletion of CNGB3 is identical by descent in multiple canine breeds and causes achromatopsia

Connie Y Yeh, Orly Goldstein, Anna V Kukekova, Debbie Holley, Amy M Knollinger, Heather J Huson, Susan E Pearce-Kelling, Gregory M Acland, András M Komáromy BMC Genetics 2013, 14:27 (20 April 2013)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access Highly Accessed

Dynamic recruitment of microRNAs to their mRNA targets in the regenerating liver

Jonathan Schug, Lindsay B McKenna, Gabriel Walton, Nicholas Hand, Sarmistha Mukherjee, Kow Essuman, Zhongjie Shi, Yan Gao, Karen Markley, Momo Nakagawa, Vasumathi Kameswaran, Anastassios Vourekas, Joshua R Friedman, Klaus H Kaestner, Linda E Greenbaum BMC Genomics 2013, 14:264 (18 April 2013)

Abstract | Full text | PDF | PubMed

9.

Research   Open Access Highly Accessed

Whole-genome sequencing in an autism multiplex family

Lingling Shi, Xu Zhang, Ryan Golhar, Frederick G Otieno, Mingze He, Cuiping Hou, Cecilia Kim, Brendan Keating, Gholson J Lyon, Kai Wang, Hakon Hakonarson Molecular Autism 2013, 4:8 (18 April 2013)

Abstract | Full text | PDF | PubMed

10.

Research   Open Access Highly Accessed

Isoform level expression profiles provide better cancer signatures than gene level expression profiles

ZhongFa Zhang, Sharmistha Pal, Yingtao Bi, Julia Tchou, Ramana V Davuluri Genome Medicine 2013, 5:33 (17 April 2013)

Abstract | Provisional PDF | PubMed |  Editor’s summary

Expression profiles at the isoform level perform better than those at the gene level to discriminate between cancer cell lines and non-oncogenic cells, regardless of tissue of origin.

11.

Proceedings   Open Access

A task-based approach for Gene Ontology evaluation

Erik L Clarke, Salvatore Loguercio, Benjamin M Good, Andrew I Su Journal of Biomedical Semantics 2013, 4(Suppl 1):S4 (15 April 2013)

Abstract | Full text | PDF

12.

Research article   Open Access

Radiation mitigating properties of the lignan component in flaxseed

Ralph Pietrofesa, Jason Turowski, Sonia Tyagi, Floyd Dukes, Evguenia Arguiri, Theresa M Busch, Shannon M Gallagher-Colombo, Charalambos C Solomides, Keith A Cengel, Melpo Christofidou-Solomidou BMC Cancer 2013, 13:179 (4 April 2013)

Abstract | Full text | PDF | PubMed

13.

Study protocol   Open Access

A pilot study of the effect of spironolactone therapy on exercise capacity and endothelial dysfunction in pulmonary arterial hypertension: study protocol for a randomized controlled trial

Jason M Elinoff, J Rame, Paul R Forfia, Mary K Hall, Junfeng Sun, Ahmed M Gharib, Khaled Abd-Elmoniem, Grace Graninger, Bonnie Harper, Robert L Danner, Michael A Solomon Trials 2013, 14:91 (2 April 2013)

Abstract | Full text | PDF | PubMed

14.

Review   Open Access Highly Accessed

Mitotic bookmarking by transcription factors

Stephan Kadauke, Gerd A Blobel Epigenetics & Chromatin 2013, 6:6 (2 April 2013)

Abstract | Full text | PDF | PubMed

15.

Short Report   Open Access

Germ-line DICER1 mutations do not make a major contribution to the etiology of familial testicular germ cell tumours

Nelly Sabbaghian, Amin Bahubeshi, Andrew Y Shuen, Peter A Kanetsky, Marc D Tischkowitz, Katherine L Nathanson, William D Foulkes BMC Research Notes 2013, 6:127 (1 April 2013)

Abstract | Full text | PDF | PubMed

16.

Research   Open Access Highly Accessed

Children’s physical activity and parents’ perception of the neighborhood environment: neighborhood impact on kids study

Karyn A Tappe, Karen Glanz, James F Sallis, Chuan Zhou, Brian E Saelens International Journal of Behavioral Nutrition and Physical Activity 2013, 10:39 (27 March 2013)

Abstract | Full text | PDF | PubMed

17.

Study protocol   Open Access Highly Accessed

Policy to implementation: evidence-based practice in community mental health – study protocol

Rinad S Beidas, Gregory Aarons, Frances Barg, Arthur Evans, Trevor Hadley, Kimberly Hoagwood, Steven Marcus, Sonja Schoenwald, Lucia Walsh, David S Mandell Implementation Science 2013, 8:38 (24 March 2013)

Abstract | Full text | PDF | PubMed

18.

Research   Open Access Highly Accessed

The transmembrane domain of HIV-1 Vpu is sufficient to confer anti-tetherin activity to SIVcpz and SIVgor Vpu proteins: cytoplasmic determinants of Vpu function

Silvia F Kluge, Daniel Sauter, Michael Vogl, Martine Peeters, Yingying Li, Frederic Bibollet-Ruche, Beatrice H Hahn, Frank Kirchhoff Retrovirology 2013, 10:32 (20 March 2013)

Abstract | Full text | PDF | PubMed

19.

Poster presentation   Free

Influence of critical care nurse education and work environment on outcomes of mechanically ventilated older adults

DM Kelly, LH Aiken Critical Care 2013, 17(Suppl 2):P504 (19 March 2013)

Full text | PDF

20.

Poster presentation   Open Access

Abrogation of Brd4 cellular function contributes to the oncogenic mechanisms of translocation t(15;19)-associated carcinoma

Ranran Wang, Christine M Heifer, Jianxin You Epigenetics & Chromatin 2013, 6(Suppl 1):P101 (18 March 2013)

Full text | PDF

21.

Poster presentation   Open Access

Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes

Juan Caravaca, Greg Donahue, Justin S Becker, Kenneth S Zaret Epigenetics & Chromatin 2013, 6(Suppl 1):P94 (18 March 2013)

Full text | PDF

22.

Oral presentation   Open Access

Controlling long-range genomic interactions to reprogram the β-globin locus

Wulan Deng, Jeremy W Rupon, Hongxin Wang, Andreas Reik, Philip D Gregory, Gerd A Blobel Epigenetics & Chromatin 2013, 6(Suppl 1):O39 (18 March 2013)

Full text | PDF

23.

Oral presentation   Open Access

Activating the genome during development and exit from mitosis

Ken Zaret, Katherine Palozola, Jan Manuel Caravaca Epigenetics & Chromatin 2013, 6(Suppl 1):O35 (18 March 2013)

Full text | PDF

24.

Poster presentation   Open Access

Pioneer transcription factor FoxA is positioned on hypersensitive nucleosomes at active enhancers

Makiko Iwafuchi-Doi, Greg Donahue, Jason Watts, Isabel Cuesta, Kenneth S Zaret Epigenetics & Chromatin 2013, 6(Suppl 1):P30 (18 March 2013)

Full text | PDF

25.

Poster presentation   Open Access

Imprinted Xlr3 (X-linked Lymphocyte Regulated 3) produces a meiosis specific protein implicated in sex chromosome gene regulation in mouse

Robert J Foley, Seth Kasowitz, Emily Clancy, Andrew Sadowski, Michael O’Neill Epigenetics & Chromatin 2013, 6(Suppl 1):P19 (18 March 2013)

Full text | PDF

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