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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Pennsylvania

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1.

Research   Open Access

Genetic variance in Nitric Oxide Synthase and Endothelin Genes among children with and without Endothelial Dysfunction

Siriporn Chatsuriyawong, David Gozal, Leila Kheirandish-Gozal, Rakesh Bhattacharjee, Ahamed A Khalyfa, Yang Wang, Hakon Hakonarson, Brendan Keating, Wasana Sukhumsirichart, Abdelnaby Khalyfa Journal of Translational Medicine 2013, 11:227 (25 September 2013)

Abstract | Full text | PDF | PubMed

2.

Research   Open Access

Isolation of RNA from equine peripheral blood cells: comparison of methods

Zibin Jiang, Cornelius E Uboh, Jinwen Chen, Lawrence R Soma SpringerPlus 2013, 2:478 (22 September 2013)

Abstract | Full text | PDF

3.

Research   Open Access

The broad autism phenotype predicts child functioning in autism spectrum disorders

Christina R Maxwell, Julia Parish-Morris, Olivia Hsin, Jennifer C Bush, Robert T Schultz Journal of Neurodevelopmental Disorders 2013, 5:25 (22 September 2013)

Abstract | Full text | PDF | PubMed

4.

Oral presentation   Open Access

Innate immune responses in acute HIV-1 infection: protective or pathogenic?

Persephone Borrow, Andrea Stacey, Angharad Fenton-May, Oliver Dibben, Elizabeth Haygreen, Tanja Emmerich, Norma Kim, Elizabeth Marshall, Kerry Lavender, Myron Cohen, Paul Goepfert, Ian Williams, Dennis Wallace, George Shaw, Beatrice Hahn, Christina Ochsenbauer, John Kappes, Philip Norris, Andrew McMichael, Barton Haynes Retrovirology 2013, 10(Suppl 1):O33 (19 September 2013)

Full text | PDF

5.

Oral presentation   Open Access

Bromodomain and extra-terminal (BET) proteins target Moloney murine leukemia virus integration to transcription start sites

Jan De Riick, Christine de Kogel, Jonas Demeulemeester, Sofie Vets, Nirav Malani, Frederic D Bushman, Katrien Busschots, Steven Husson, Rik Gijsbers, Zeger Debyser Retrovirology 2013, 10(Suppl 1):O20 (19 September 2013)

Full text | PDF

6.

Oral presentation   Open Access

BET proteins target murine leukemia virus integration to transcription start sites

Amit Sharma, Ross Larue, Matthew Plumb, Nirav Malani, Frances Male, Alison Slaughter, Jacques Kessl, Nikoloz Shkriabai, Elizabeth Coward, Sriram Aiyer, Patrick Green, Li Wu, Monica Roth, Frederic Bushman, Mamuka Kvaratskhelia Retrovirology 2013, 10(Suppl 1):O19 (19 September 2013)

Full text | PDF

7.

Oral presentation   Open Access

Tau-focused therapy and tau transmission: Implications for Alzheimer’s Disease and related tauopathies

John Q Trojanowski Molecular Neurodegeneration 2013, 8(Suppl 1):O37 (13 September 2013)

Full text | PDF

8.

Oral presentation   Open Access

Transmission of alpha-synuclein in Parkinson’s disease

Virginia M-Y Lee Molecular Neurodegeneration 2013, 8(Suppl 1):O25 (13 September 2013)

Full text | PDF

9.

Research   Open Access

Efficient digest of high-throughput sequencing data in a reproducible report

Zhe Zhang, Jeremy Leipzig, Ariella Sasson, Angela M Yu, Juan C Perin, Hongbo M Xie, Mahdi Sarmady, Patrick V Warren, Peter S White BMC Bioinformatics 2013, 14(Suppl 11):S3 (13 September 2013)

Abstract | Full text | PDF

10.

Research   Open Access Highly Accessed

The Arctic AβPP mutation leads to Alzheimer’s disease pathology with highly variable topographic deposition of differentially truncated Aβ

Hannu Kalimo, Maciej Lalowski, Nenad Bogdanovic, Ola Philipson, Thomas D Bird, David Nochlin, Gerard D Schellenberg, RoseMarie Brundin, Tommie Olofsson, Rabah Soliymani, Marc Baumann, Oliver Wirths, Thomas A Bayer, Lars NG Nilsson, Hans Basun, Lars Lannfelt, Martin Ingelsson Acta Neuropathologica Communications 2013, 1:60 (10 September 2013)

Abstract | Full text | PDF |  Editor’s summary

The Arctic AβPP mutation leads to Alzheimer ́s disease pathology; however, special characteristics are observed within the human brain including parenchymal deposits composed of non-fibrillar, Congo negative Aβ aggregates.

11.

Research article   Open Access Highly Accessed

Stromal matrix metalloprotease-13 knockout alters Collagen I structure at the tumor-host interface and increases lung metastasis of C57BL/6 syngeneic E0771 mammary tumor cells

Seth W Perry, Jill M Schueckler, Kathleen Burke, Giuseppe L Arcuri, Edward B Brown BMC Cancer 2013, 13:411 (5 September 2013)

Abstract | Full text | PDF | PubMed

12.

Research   Open Access

PINOT NOIR: Pulmonic INsufficiency imprOvemenT with Nitric Oxide Inhalational Response

Stephen A Hart, Ganesh P Devendra, Yuli Y Kim, Scott D Flamm, Vidyasagar Kalahasti, Janine Arruda, Esteban Walker, Thananya Boonyasirinant, Michael Bolen, Randolph Setser, Richard A Krasuski Journal of Cardiovascular Magnetic Resonance 2013, 15:75 (4 September 2013)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access

Joint pain severity predicts premature discontinuation of aromatase inhibitors in breast cancer survivors

Kannie Chim, Sharon X Xie, Carrie T Stricker, Qing S Li, Robert Gross, John T Farrar, Angela DeMichele, Jun J Mao BMC Cancer 2013, 13:401 (3 September 2013)

Abstract | Full text | PDF | PubMed

14.

Research article   Open Access

Mammary carcinoma cell derived cyclooxygenase 2 suppresses tumor immune surveillance by enhancing intratumoral immune checkpoint activity

Nune Markosyan, Edward P Chen, Rebecca A Evans, Victoire Ndong, Robert H Vonderheide, Emer M Smyth Breast Cancer Research 2013, 15:R75 (3 September 2013)

Abstract | Provisional PDF | PubMed

15.

Research   Open Access

Cardiac angiogenesis directed by stable Hypoxia Inducible Factor-1

Chad B Walton, Jennifer Ecker, Cynthia D Anderson, Joel T Outten, Randall Z Allison, Ralph V Shohet Vascular Cell 2013, 5:15 (29 August 2013)

Abstract | Full text | PDF | PubMed

16.

Software   Open Access Highly Accessed

NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data

Yingtao Bi, Ramana V Davuluri BMC Bioinformatics 2013, 14:262 (27 August 2013)

Abstract | Full text | PDF | PubMed

17.

Research   Open Access

Modulation of cardiometabolic pathways in skin and serum from patients with psoriasis

Nehal N Mehta, Katherine Li, Philippe Szapary, James Krueger, Carrie Brodmerkel Journal of Translational Medicine 2013, 11:194 (22 August 2013)

Abstract | Full text | PDF | PubMed

18.

Original research   Open Access Highly Accessed

Oral food challenge to wheat: a near-fatal anaphylaxis and review of 93 food challenges in children

Antonella Cianferoni, Karishma Khullar, Rushani Saltzman, Joel Fiedler, Jackie P Garrett, David R Naimi, Jonathan M Spergel World Allergy Organization Journal 2013, 6:14 (21 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A retrospective study looking at 93 cases of oral food challenge in children indicates that wheat can be a risk factor for severe reaction, including anaphylaxis, despite the perception that the risk for severe reaction to wheat is lower than that for egg, milk and peanut.

19.

Research   Open Access Highly Accessed

Combined measurement of perfusion, venous oxygen saturation, and skeletal muscle T2* during reactive hyperemia in the leg

Erin K Englund, Michael C Langham, Cheng Li, Zachary B Rodgers, Thomas F Floyd, Emile R Mohler, Felix W Wehrli Journal of Cardiovascular Magnetic Resonance 2013, 15:70 (19 August 2013)

Abstract | Full text | PDF | PubMed

20.

Short report   Open Access

The effect of multiple allergen immunotherapy on exhaled nitric oxide in adults with allergic rhinitis

Michele Columbo, Bruce Wong, Reynold A Panettieri, Albert S Rohr Allergy, Asthma & Clinical Immunology 2013, 9:31 (19 August 2013)

Abstract | Full text | PDF | PubMed

21.

Research   Open Access Highly Accessed

HIV latency and integration site placement in five cell-based models

Scott Sherrill-Mix, Mary K Lewinski, Marylinda Famiglietti, Alberto Bosque, Nirav Malani, Karen E Ocwieja, Charles C Berry, David Looney, Liang Shan, Luis M Agosto, Matthew J Pace, Robert F Siliciano, Una O’Doherty, John Guatelli, Vicente Planelles, Frederic D Bushman Retrovirology 2013, 10:90 (16 August 2013)

Abstract | Full text | PDF | PubMed

22.

Short report   Open Access Highly Accessed

Clonal amplification and maternal-infant transmission of nevirapine-resistant HIV-1 variants in breast milk following single-dose nevirapine prophylaxis

Sallie R Permar, Maria G Salazar, Feng Gao, Fangping Cai, Gerald H Learn, Linda Kalilani, Beatrice H Hahn, George M Shaw, Jesus F Salazar-Gonzalez Retrovirology 2013, 10:88 (14 August 2013)

Abstract | Full text | PDF | PubMed

23.

Review   Open Access Highly Accessed

Proteomic characterization of novel histone post-translational modifications

Anna M Arnaudo, Benjamin A Garcia Epigenetics & Chromatin 2013, 6:24 (1 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

As part of the Epigenetics & Chromatin: Interactions and processes conference series, Arnaudo and Garcia review the proteomic tools for identification of histone modifications, and provide an overview of post-translational modifications found in the last 5 years.

24.

Review   Open Access

Role of peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) in denervation-induced atrophy in aged muscle: facts and hypotheses

Gilles Gouspillou, Martin Picard, Richard Godin, Yan Burelle, Russell T Hepple Longevity & Healthspan 2013, 2:13 (1 August 2013)

Abstract | Full text | PDF

25.

Research   Open Access Highly Accessed

Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement

Kai Wang, Cecilia Kim, Jonathan Bradfield, Yunfei Guo, Elina Toskala, Frederick G Otieno, Cuiping Hou, Kelly Thomas, Christopher Cardinale, Gholson J Lyon, Ryan Golhar, Hakon Hakonarson Genome Medicine 2013, 5:67 (26 July 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

DNA and RNA sequencing identifies mutations within RBCK1 in children with a previously undiagnosed disease characterised by progressive muscular weakness and cardiomyopathy.

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