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Work published with BioMed Central in the last 12 months by researchers at Cold Spring Harbor Laboratory
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Research article
GAGE: generally applicable gene set enrichment for pathway analysis Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ BMC Bioinformatics 2009, 10 :161 (27 May 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Determination of enriched histone modifications in non-genic portions of the human genome Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ BMC Genomics 2009, 10 :143 (31 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines Boles MK, Wilkinson BM, Maxwell A, Lai L, Mills AA, Nishijima I, Salinger AP, Moskowitz I, Hirschi KK, Liu B, Bradley A, Justice MJ BMC Genetics 2009, 10 :12 (6 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Gene set-based module discovery in the breast cancer transcriptome Niida A, Smith AD, Imoto S, Aburatani H, Zhang MQ, Akiyama T BMC Bioinformatics 2009, 10 :71 (26 February 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Correction
Correction: Reactome: a knowledge base of biologic pathways and processes Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L Genome Biology 2009, 10 :402 (4 February 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Introduction
The Seventh Asia Pacific Bioinformatics Conference (APBC2009) Zhang MQ, Waterman MS, Zhang X BMC Bioinformatics 2009, 10 (Suppl 1):S1 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
nGASP Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D, the nGASP Consortium , Stein LD BMC Bioinformatics 2008, 9 :549 (19 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information Luo W, Hankenson KD, Woolf PJ BMC Bioinformatics 2008, 9 :467 (3 November 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [1 comment ]
Research article
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats Wicker T, Narechania A, Sabot F, Stein J, Vu GTH, Graner A, Ware D, Stein N BMC Genomics 2008, 9 :518 (31 October 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Methodology article
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes Kurtz S, Narechania A, Stein JC, Ware D BMC Genomics 2008, 9 :517 (31 October 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells Niida A, Smith AD, Imoto S, Tsutsumi S, Aburatani H, Zhang MQ, Akiyama T BMC Bioinformatics 2008, 9 :404 (29 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
Kismeth: Analyzer of plant methylation states through bisulfite sequencing Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R BMC Bioinformatics 2008, 9 :371 (11 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors Baumbusch LO, Aarøe J, Johansen FE, Hicks J, Sun H, Bruhn L, Gunderson K, Naume B, Kristensen VN, Liestøl K, Børresen-Dale AL, Lingjærde OC BMC Genomics 2008, 9 :379 (8 August 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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