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BMC  Supporter member - Cold Spring Harbor Laboratory

CSHL is a research and educational institution. The laboratory has research programs focusing on cancer, neurobiology, plant genetics, genomics and bioinformatics, and a broad educational mission, including the recently established Watston School of Biological Sciences.

http://www.cshl.org


Research staff and students at Cold Spring Harbor Laboratory:
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Work published with BioMed Central in the last 12 months by researchers at Cold Spring Harbor Laboratory


Order by: Date published / Most viewed (30 days) / Most viewed (past year)


Research article    
GAGE: generally applicable gene set enrichment for pathway analysis
Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ
BMC Bioinformatics 2009, 10:161 (27 May 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Determination of enriched histone modifications in non-genic portions of the human genome
Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ
BMC Genomics 2009, 10:143 (31 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines
Boles MK, Wilkinson BM, Maxwell A, Lai L, Mills AA, Nishijima I, Salinger AP, Moskowitz I, Hirschi KK, Liu B, Bradley A, Justice MJ
BMC Genetics 2009, 10:12 (6 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Gene set-based module discovery in the breast cancer transcriptome
Niida A, Smith AD, Imoto S, Aburatani H, Zhang MQ, Akiyama T
BMC Bioinformatics 2009, 10:71 (26 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Correction    
Correction: Reactome: a knowledge base of biologic pathways and processes
Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L
Genome Biology 2009, 10:402 (4 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Introduction    
The Seventh Asia Pacific Bioinformatics Conference (APBC2009)
Zhang MQ, Waterman MS, Zhang X
BMC Bioinformatics 2009, 10(Suppl 1):S1 (30 January 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
nGASP the nematode genome annotation assessment project
Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D, the nGASP Consortium , Stein LD
BMC Bioinformatics 2008, 9:549 (19 December 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information
Luo W, Hankenson KD, Woolf PJ
BMC Bioinformatics 2008, 9:467 (3 November 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]

Research article    
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats
Wicker T, Narechania A, Sabot F, Stein J, Vu GTH, Graner A, Ware D, Stein N
BMC Genomics 2008, 9:518 (31 October 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Methodology article    
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
Kurtz S, Narechania A, Stein JC, Ware D
BMC Genomics 2008, 9:517 (31 October 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells
Niida A, Smith AD, Imoto S, Tsutsumi S, Aburatani H, Zhang MQ, Akiyama T
BMC Bioinformatics 2008, 9:404 (29 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Software    
Kismeth: Analyzer of plant methylation states through bisulfite sequencing
Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R
BMC Bioinformatics 2008, 9:371 (11 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors
Baumbusch LO, Aarøe J, Johansen FE, Hicks J, Sun H, Bruhn L, Gunderson K, Naume B, Kristensen VN, Liestøl K, Børresen-Dale AL, Lingjærde OC
BMC Genomics 2008, 9:379 (8 August 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]


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