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Work published with BioMed Central in the last 12 months by researchers at Cold Spring Harbor Laboratory
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Oral presentation
Chronux: a platform for analyzing neural signals Bokil HS, Andrews P, Maniar H, Pesaran B, Kulkarni J, Loader C, Mitra PP BMC Neuroscience 2009, 10 (Suppl 1):S3 (29 September 2009) [Abstract ] [Full text ] [PDF ]
Research
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG Genome Biology 2009, 10 :R101 (24 September 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services Gessler DDG, Schiltz GS, May GD, Avraham S, Town CD, Grant D, Nelson RT BMC Bioinformatics 2009, 10 :309 (23 September 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches Robinson SJ, Tang LH, Mooney BAG, McKay SJ, Clarke WE, Links MG, Karcz S, Regan S, Wu YY, Gruber MY, Cui D, Yu M, Parkin IAP BMC Plant Biology 2009, 9 :101 (31 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A Myc -regulated transcriptional network controls B-cell fate in response to BCR triggering Murn J, Mlinaric-Rascan I, Vaigot P, Alibert O, Frouin V, Gidrol X BMC Genomics 2009, 10 :323 (17 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Poster presentation
Is the formation of ocular dominance patterns instructed by molecular labels? Tsigankov D, Koulakov A BMC Neuroscience 2009, 10 (Suppl 1):P65 (13 July 2009) [Abstract ] [Full text ] [PDF ]
Research article
GAGE: generally applicable gene set enrichment for pathway analysis Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ BMC Bioinformatics 2009, 10 :161 (27 May 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Determination of enriched histone modifications in non-genic portions of the human genome Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ BMC Genomics 2009, 10 :143 (31 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines Boles MK, Wilkinson BM, Maxwell A, Lai L, Mills AA, Nishijima I, Salinger AP, Moskowitz I, Hirschi KK, Liu B, Bradley A, Justice MJ BMC Genetics 2009, 10 :12 (6 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Gene set-based module discovery in the breast cancer transcriptome Niida A, Smith AD, Imoto S, Aburatani H, Zhang MQ, Akiyama T BMC Bioinformatics 2009, 10 :71 (26 February 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Correction
Correction: Reactome: a knowledge base of biologic pathways and processes Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L Genome Biology 2009, 10 :402 (4 February 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Introduction
The Seventh Asia Pacific Bioinformatics Conference (APBC2009) Zhang MQ, Waterman MS, Zhang X BMC Bioinformatics 2009, 10 (Suppl 1):S1 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
nGASP Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D, the nGASP Consortium , Stein LD BMC Bioinformatics 2008, 9 :549 (19 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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