Member - J. Craig Venter Institute
Founded in 1992, The Institute for Genomic Research (TIGR) is a not-for-profit research institute whose primary research interests are in structural, functional and comparative analysis of genomes and gene products from a wide variety of organisms
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Work published with BioMed Central in the last 12 months by researchers at J. Craig Venter Institute
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Research article
Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3 Li BW, Rush AC, Mitreva M, Yin Y, Spiro D, Ghedin E, Weil GJ BMC Genomics 2009, 10 :267 (15 June 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica -specific expressed sequences Trick M, Cheung F, Drou N, Fraser F, Lobenhofer EK, Hurban P, Magusin A, Town CD, Bancroft I BMC Plant Biology 2009, 9 :50 (8 May 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Discovery notes
A strain-variable bacteriocin in Bacillus anthracis and Bacillus cereus with repeated Cys-Xaa-Xaa motifs Haft DH Biology Direct 2009, 4 :15 (21 April 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Bacillus anthracis in China and its relationship to worldwide lineagesSimonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, Keim P BMC Microbiology 2009, 9 :71 (15 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Evaluation of next generation sequencing platforms for population targeted sequencing studies Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, Beeson KY, Schork NJ, Murray SS, Topol EJ, Levy S, Frazer KA Genome Biology 2009, 10 :R32 (27 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes Pieper R, Huang ST, Clark DJ, Robinson JM, Alami H, Parmar PP, Suh MJ, Kuntumalla S, Bunai CL, Perry RD, Fleischmann RD, Peterson SN Proteome Science 2009, 7 :5 (19 February 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps Desjardins CA, Gundersen-Rindal DE, Hostetler JB, Tallon LJ, Fadrosh DW, Fuester RW, Pedroni MJ, Haas BJ, Schatz MC, Jones KM, Crabtree J, Forberger H, Nene V Genome Biology 2008, 9 :R183 (30 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applicationsValdés J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R, Eisen JA, Holmes DS BMC Genomics 2008, 9 :597 (11 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species Lorenzi H, Thiagarajan M, Haas B, Wortman J, Hall N, Caler E BMC Genomics 2008, 9 :595 (10 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R BMC Bioinformatics 2008, 9 :529 (9 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Software
IDEA: Interactive Display for Evolutionary Analyses Egan A, Mahurkar A, Crabtree J, Badger JH, Carlton JM, Silva JC BMC Bioinformatics 2008, 9 :524 (8 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Properties of non-coding DNA and identification of putative cis -regulatory elements in Theileria parva Guo X, Silva JC BMC Genomics 2008, 9 :582 (3 December 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Genomic islands from five strains of Burkholderia pseudomallei Tuanyok A, Leadem BR, Auerbach RK, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Mayo M, Wuthiekanun V, Brettin TS, Nierman WC, Peacock SJ, Currie BJ, Wagner DM, Keim P BMC Genomics 2008, 9 :566 (27 November 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, Hamilton EP, Orias E, Eisen JA, Methé BA BMC Genomics 2008, 9 :562 (26 November 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches Cheung F, Win J, Lang JM, Hamilton J, Vuong H, Leach JE, Kamoun S, André Lévesque C, Tisserat N, Buell CR BMC Genomics 2008, 9 :542 (15 November 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71 Ester C, Uetz P BMC Biochemistry 2008, 9 :29 (11 November 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Correction
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A Salzberg SL, Sommer DD, Schatz MC, Phillippy AM, Rabinowicz PD, Tsuge S, Furutani A, Ochiai H, Delcher AL, Kelley D, Madupu R, Puiu D, Radune D, Shumway M, Trapnell C, Aparna G, Jha G, Pandey A, Patil PB, Ishihara H, Meyer DF, Szurek B, Verdier V, Koebnik R, Dow JM, Ryan RP, Hirata H, Tsuyumu S, Lee SW, Seo YS, et al. BMC Genomics 2008, 9 :534 (11 November 2008) [Abstract ] [Full text ] [PDF ]
Research article
A first survey of the rye (Secale cereale ) genome composition through BAC end sequencing of the short arm of chromosome 1R Barto BMC Plant Biology 2008, 8 :95 (19 September 2008) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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