1.
Selection and validation of reference genes for gene expression analysis in apomictic and sexual Cenchrus ciliaris
Bindu
Simon,
Joann
A
Conner,
Peggy
Ozias-Akins
BMC Research Notes 2013, 6 :397 (2 October 2013)
Abstract | Provisional PDF
2.
A test of agent-based models as a tool for predicting patterns of pathogen transmission in complex landscapes
Kelly
E
Lane-deGraaf,
Ryan
C
Kennedy,
SM
Niaz
Arifin,
Gregory
R
Madey,
Agustin
Fuentes,
Hope
Hollocher
BMC Ecology 2013, 13 :35 (25 September 2013)
Abstract | Provisional PDF
| PubMed
3.
Different patterns of gene structure divergence following gene duplication in Arabidopsis
Yupeng
Wang,
Xu
Tan,
Andrew
H
Paterson
BMC Genomics 2013, 14 :652 (24 September 2013)
Abstract | Full text | PDF | PubMed
4.
BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower
Maren
Livaja,
Yu
Wang,
Silke
Wieckhorst,
Grit
Haseneyer,
Michael
Seidel,
Volker
Hahn,
Steven
J
Knapp,
Stefan
Taudien,
Chris-Carolin
Schön,
Eva
Bauer
BMC Genomics 2013, 14 :628 (17 September 2013)
Abstract | Full text | PDF
5.
Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress
Charlotte
M
Wilson,
Shihui
Yang,
Miguel
Rodriguez,
Qin
Ma,
Courtney
M
Johnson,
Lezlee
Dice,
Ying
Xu,
Steven
D
Brown
Biotechnology for Biofuels 2013, 6 :131 (12 September 2013)
Abstract | Full text | PDF | PubMed
6.
Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ 54 (RpoN) regulon of Salmonella Typhimurium LT2
David
J
Samuels,
Jonathan
G
Frye,
Steffen
Porwollik,
Michael
McClelland,
Jan
Mrázek,
Timothy
R
Hoover,
Anna
C
Karls
BMC Genomics 2013, 14 :602 (5 September 2013)
Abstract | Full text | PDF | PubMed
7.
Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster
José
J
de Vega-Bartol,
Marta
Simões,
W
Lorenz,
Andreia
S
Rodrigues,
Rob
Alba,
Jeffrey
F D
Dean,
Célia
M
Miguel
BMC Plant Biology 2013, 13 :123 (30 August 2013)
Abstract | Full text | PDF | PubMed
8.
Transcriptional analysis of abdominal fat in genetically fat and lean chickens reveals adipokines, lipogenic genes and a link between hemostasis and leanness
Christopher
W
Resnyk,
Wilfrid
Carré,
Xiaofei
Wang,
Tom
E
Porter,
Jean
Simon,
Elisabeth
Le Bihan-Duval,
Michael
J
Duclos,
Sam
E
Aggrey,
Larry
A
Cogburn
BMC Genomics 2013, 14 :557 (16 August 2013)
Abstract | Full text | PDF | PubMed
9.
Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile
Jenna
Oberstaller,
Sandeep
J
Joseph,
Jessica
C
Kissinger
BMC Genomics 2013, 14 :516 (29 July 2013)
Abstract | Full text | PDF | PubMed
10.
Linking vitamin B1 with cancer cell metabolism
Jason
A
Zastre,
Rebecca
L
Sweet,
Bradley
S
Hanberry,
Star
Ye
Cancer & Metabolism 2013, 1 :16 (24 July 2013)
Abstract | Full text | PDF
|
Editor’s summary
Vitamin supplements are often used by cancer patients in the absence of any clear data, but thiamine (vitamin B1) might indeed impact cancer cell metabolism, proliferation and survival.
11.
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith
R
Bradnam,
Joseph
N
Fass,
Anton
Alexandrov,
Paul
Baranay,
Michael
Bechner,
Inanç
Birol,
Sébastien
Boisvert,
Jarrod
A
Chapman,
Guillaume
Chapuis,
Rayan
Chikhi,
Hamidreza
Chitsaz,
Wen-Chi
Chou,
Jacques
Corbeil,
Cristian
Del Fabbro,
T
Docking,
Richard
Durbin,
Dent
Earl,
Scott
Emrich,
Pavel
Fedotov,
Nuno
A
Fonseca,
Ganeshkumar
Ganapathy,
Richard
A
Gibbs,
Sante
Gnerre,
Élénie
Godzaridis,
Steve
Goldstein,
Matthias
Haimel,
Giles
Hall,
David
Haussler,
Joseph
B
Hiatt,
Isaac
Y
Ho
et al.
GigaScience 2013, 2 :10 (22 July 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Assemblathon 2 is the largest systematic assessment of how the process of genome assembly is carried out, with 21 participating teams submitting 43 entries based on data from 3 different genomes
12.
Thermal, mechanical, and moisture absorption properties of egg white protein bioplastics with natural rubber and glycerol
Alexander
Jones,
Mark
Zeller,
Suraj
Sharma
Progress in Biomaterials 2013, 2 :12 (3 July 2013)
Abstract | Full text | PDF
13.
Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era
Savio
de Siqueira Ferreira,
Milton
Nishiyama,
Andrew
H
Paterson,
Glaucia
Souza
Genome Biology 2013, 14 :210 (27 June 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A Review of developments in our ability to improve desirable traits in biofuel and energy crops
14.
Moraxella catarrhalis uses a twin-arginine translocation system to secrete the β -lactamase BRO-2
Rachel
Balder,
Teresa
L
Shaffer,
Eric
R
Lafontaine
BMC Microbiology 2013, 13 :140 (19 June 2013)
Abstract | Full text | PDF | PubMed
15.
Changes in the concentrations of biochemical indicators of diet and nutritional status of pregnant women across pregnancy trimesters in Trujillo, Peru, 2004–2005
D
Horton,
Olorunfemi
Adetona,
Manuel
Aguilar-Villalobos,
Brandon
E
Cassidy,
Christine
M
Pfeiffer,
Rosemary
L
Schleicher,
Kathleen
L
Caldwell,
Larry
L
Needham,
Stephen
L
Rathbun,
John
E
Vena,
Luke
P
Naeher
Nutrition Journal 2013, 12 :80 (11 June 2013)
Abstract | Full text | PDF | PubMed
16.
Leishmaniasis sand fly vector density reduction is less marked in destitute housing after insecticide thermal fogging
Luis
Chaves,
Jose
E
Calzada,
Chystrie
Rigg,
Anayansi
Valderrama,
Nicole
L
Gottdenker,
Azael
Saldaña
Parasites & Vectors 2013, 6 :164 (6 June 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
This study shows how poor housing quality can undermine the success of insecticide- based phlebotomine sand fly control. Image: Insecticide Thermal Fogging in Trinidad de Las Minas, Panama.
17.
Structural and evolutionary adaptation of rhoptry kinases and pseudokinases, a family of coccidian virulence factors
Eric
Talevich,
Natarajan
Kannan
BMC Evolutionary Biology 2013, 13 :117 (6 June 2013)
Abstract | Full text | PDF | PubMed
18.
Presence of Antibodies against Genogroup VI Norovirus in Humans
João
Mesquita,
Verónica
P
Costantini,
Jennifer
L
Cannon,
Seh-ching
Lin,
Maria São
Nascimento,
Jan
Vinjé
Virology Journal 2013, 10 :176 (4 June 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Antibodies against canine norovirus were found in 22% of veterinarians and 6% of a control group and were associated with needle stick injuries with dog blood, suggesting that this pathogen may be tranmissible via the blood route to humans.
19.
Metabolic engineering of Caldicellulosiruptor bescii yields increased hydrogen production from lignocellulosic biomass
Minseok
Cha,
Daehwan
Chung,
James
G
Elkins,
Adam
M
Guss,
Janet
Westpheling
Biotechnology for Biofuels 2013, 6 :85 (3 June 2013)
Abstract | Full text | PDF | PubMed
20.
Acknowledgement of manuscript reviewers
Mark
Eiteman
Journal of Biological Engineering 2013, 7 :4 (30 May 2013)
Abstract | Full text | PDF | PubMed
21.
Overcoming restriction as a barrier to DNA transformation in Caldicellulosiruptor species results in efficient marker replacement
Daehwan
Chung,
Joel
Farkas,
Janet
Westpheling
Biotechnology for Biofuels 2013, 6 :82 (29 May 2013)
Abstract | Full text | PDF | PubMed
22.
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
Ray
Ming,
Robert
VanBuren,
Yanling
Liu,
Mei
Yang,
Yuepeng
Han,
Lei-Ting
Li,
Qiong
Zhang,
Min-Jeong
Kim,
Michael
C
Schatz,
Michael
Campbell,
Jingping
Li,
John
E
Bowers,
Haibao
Tang,
Eric
Lyons,
Ann
A
Ferguson,
Giuseppe
Narzisi,
David
R
Nelson,
Crysten
E
Blaby-Haas,
Andrea
R
Gschwend,
Yuannian
Jiao,
Joshua
P
Der,
Fanchang
Zeng,
Jennifer
Han,
Xiang
Min,
Karen
A
Hudson,
Ratnesh
Singh,
Aleel
K
Grennan,
Steven
J
Karpowicz,
Jennifer
R
Watling,
Kikukatsu
Ito
et al.
Genome Biology 2013, 14 :R41 (10 May 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central | f1000
|
Editor’s summary
The genome of the long-living, slowly evolving sacred lotus reveals the genetic mechanisms underlying its adaptation to limited nutrient availability
23.
Expression and sub-cellular localization of an epigenetic regulator, co-activator arginine methyltransferase 1 (CARM1), is associated with specific breast cancer subtypes and ethnicity
Melissa
B
Davis,
Xinyu
Liu,
Shiyao
Wang,
Jaxk
Reeves,
Andrey
Khramtsov,
Dezheng
Huo,
Olufunmilayo
I
Olopade
Molecular Cancer 2013, 12 :40 (10 May 2013)
Abstract | Full text | PDF | PubMed
24.
Nuclear war between Israel and Iran: lethality beyond the pale
Cham
E
Dallas,
William
C
Bell,
David
J
Stewart,
Antonio
Caruso,
Frederick
M
Burkle, Jr
Conflict and Health 2013, 7 :10 (10 May 2013)
Abstract | Full text | PDF | PubMed
25.
Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production
Hui
Shen,
Charleson
R
Poovaiah,
Angela
Ziebell,
Timothy
J
Tschaplinski,
Sivakumar
Pattathil,
Erica
Gjersing,
Nancy
L
Engle,
Rui
Katahira,
Yunqiao
Pu,
Robert
Sykes,
Fang
Chen,
Arthur
J
Ragauskas,
Jonathan
R
Mielenz,
Michael
G
Hahn,
Mark
Davis,
C Neal
Stewart,
Richard
A
Dixon
Biotechnology for Biofuels 2013, 6 :71 (7 May 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central