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Member - Howard Hughes Medical Institute

Howard Hughes Medical Institute, a biomedical research organization, serves society by investigating human health and disease and by providing support to improve science education at all levels.

www.hhmi.org

Research staff at Howard Hughes Medical Institute HHMI:

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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Howard Hughes Medical Institute

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	1.	Research article *The Caenorhabditis elegans* voltage-gated calcium channel subunits UNC-2 and UNC-36 and the calcium-dependent kinase UNC-43/CaMKII regulate neuromuscular junction morphology** Raymond C Caylor, Yishi Jin, Brian D Ackley Neural Development 2013, 8:10 (10 May 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Research article Ancient origin of somatic and visceral neurons Marc Nomaksteinsky, Stefan Kassabov, Zoubida Chettouh, Henri-Corto Stoeklé, Laure Bonnaud, Gilles Fortin, Eric R Kandel, Jean-François Brunet BMC Biology 2013, 11:53 (30 April 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The great American palaeontologist and anatomist Alfred Romer speculated that early in animal life, an emerging somatic nervous system, focused on the outside world, struggled to dominate the visceral nervous system that takes care of the internal systems that keep us alive. Jean-François Brunet and colleagues identify the molecular signatures that tell the evolutionary tale of this duality.
	3.	Opinion Sixty years of genome biology W Doolittle, Peter Fraser, Mark B Gerstein, Brenton R Graveley, Steven Henikoff, Curtis Huttenhower, Alicia Oshlack, Chris P Ponting, John L Rinn, Michael C Schatz, Jernej Ule, Detlef Weigel, George M Weinstock Genome Biology 2013, 14:113 (25 April 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Members of Genome Biology's Editorial Board select their highlights from the 60 years of genome biology that followed the double helix
	4.	Research highlight The complex binding of PRDM9 Laure Ségurel Genome Biology 2013, 14:112 (24 April 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A Research Highlight by Laure Segurel offers a perspective on this issue's Research Article delineating the DNA-binding properties of PRDM9
	5.	Research ZASC1 knockout mice exhibit an early bone marrow-specific defect in murine leukemia virus replication Shannon Seidel, James Bruce, Mathias Leblanc, Kuo-Fen Lee, Hung Fan, Paul Ahlquist, John AT Young Virology Journal 2013, 10:130 (24 April 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Research article *Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis* f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors** Dario Cantu, Vanesa Segovia, Daniel MacLean, Rosemary Bayles, Xianming Chen, Sophien Kamoun, Jorge Dubcovsky, Diane GO Saunders, Cristobal Uauy BMC Genomics 2013, 14:270 (22 April 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Opinion Of flies and men: insights on organismal metabolism from fruit flies Akhila Rajan, Norbert Perrimon BMC Biology 2013, 11:38 (15 April 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary For many reasons metabolism is now a high-profile topic, and in an update to mark the tenth anniversary of BMC Biology, Norbert Perrimon and Akhila Rajan review the remarkable similarities that make Drosophila a model for mammalian metabolism, and some recent advances made possible by the advantages of this model organism.
	8.	Interview Two structure papers, a call from Frankfurt airport, and how to escape from reviewer delays: An interview with Peter Walter Peter Walter, Miranda Robertson BMC Biology 2013, 11:34 (15 April 2013) Full text \| PDF \| PubMed \| Cited on BioMed Central
	9.	Interview An interview with Patrick O Brown on the origins and future of open access Patrick O Brown BMC Biology 2013, 11:33 (15 April 2013) Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary In an interview for the BMC Biology tenth anniversary collection, Patrick O Brown excavates his memory for the origins of open access publishing, and finds a vision of the future still to be fulfilled.
	10.	Poster presentation High-resolution mapping of transcription factor binding sites on native chromatin Sivakanthan Kasinathan, Steven Henikoff Epigenetics & Chromatin 2013, 6(Suppl 1):P114 (8 April 2013) Full text \| PDF
	11.	Methods Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana Thanh Theresa Dinh, Michael O’Leary, So Youn Won, Shengben Li, Lorena Arroyo, Xigang Liu, Andrew Defries, Binglian Zheng, Sean R Cutler, Xuemei Chen Silence 2013, 4:1 (5 April 2013) Abstract \| Full text \| PDF \| PubMed
	12.	Correction Correction: Mechanisms of stomatal development: an evolutionary view Anne Vatén, Dominique C Bergmann EvoDevo 2013, 4:11 (4 April 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Research The pea aphid uses a version of the terminal system during oviparous, but not viviparous, development Ryan D Bickel, Hillary C Cleveland, Joanna Barkas, Caitlin C Jeschke, Amelie A Raz, David L Stern, Gregory K Davis EvoDevo 2013, 4:10 (3 April 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Research highlight Pushing the (nuclear) envelope into meiosis Abby F Dernburg Genome Biology 2013, 14:110 (27 March 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Abby Dernburg discusses recent research linking nuclear lamins to chromosome pairing in meiosis
	15.	Poster presentation Centromere-specific histone Cse4 by the chaperone Scm3 Uhn-Soo Cho, Stephen C Harrison Epigenetics & Chromatin 2013, 6(Suppl 1):P95 (18 March 2013) Full text \| PDF
	16.	Poster presentation Genome-wide analysis reveals TET-and TDG-mediated 5-methylcytosine oxidation dynamics Li Shen, Hao Wu, Dinh Diep, Ana C D’Alessio, Alan Fung, Kun Zhang, Yi Zhang Epigenetics & Chromatin 2013, 6(Suppl 1):P88 (18 March 2013) Full text \| PDF
	17.	Poster presentation MeCP2 binds to 5hmc enriched within active genes and accessible chromatin in the nervous system Marian Mellen, Pinar Ayata, Scott Dewell, Skirmantas Kriaucionis, Nathaniel Heintz Epigenetics & Chromatin 2013, 6(Suppl 1):P52 (18 March 2013) Full text \| PDF
	18.	Oral presentation The roles of long noncoding RNA in epigenetic regulation Jeannie T Lee Epigenetics & Chromatin 2013, 6(Suppl 1):O31 (18 March 2013) Full text \| PDF
	19.	Oral presentation ISWI and CHD chromatin remodelers bind to promoters but act in gene bodies Gabriel E Zentner, Toshio Tsukiyama, Steven Henikoff Epigenetics & Chromatin 2013, 6(Suppl 1):O29 (18 March 2013) Full text \| PDF
	20.	Oral presentation Germline epigenetics, and reprogramming in zebrafish early embryos Magdalena E Potok, David A Nix, Timothy J Parnell, Bradley R Cairns Epigenetics & Chromatin 2013, 6(Suppl 1):O23 (18 March 2013) Full text \| PDF
	21.	Oral presentation Chromatin and higher-order chromosome organization shape the recombination landscape in C. elegans Chitra V Kotwaliwale, Sasha A Langley, Andrea C Dose, Clara W Wang, Abby F Dernburg Epigenetics & Chromatin 2013, 6(Suppl 1):O17 (18 March 2013) Full text \| PDF
	22.	Oral presentation Methylation of histone H3 at lysine 23 in meiotic heterochromatin Romeo Papazvan, Ekaterina Voronina, Jessica R Chapman, Tonya M Gilbert, Elizabeth Meier, Jeffrey Shabanowitz, Donald F Hunt, Yifan Liu, Sean D Taverna Epigenetics & Chromatin 2013, 6(Suppl 1):O13 (18 March 2013) Full text \| PDF
	23.	Research Retrotransposition of gene transcripts leads to structural variation in mammalian genomes Adam D Ewing, Tracy J Ballinger, Dent Earl, Christopher C Harris, Li Ding, Richard K Wilson, David Haussler Genome Biology 2013, 14:R22 (13 March 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary An analysis of gene retrocopy insertion polymorphisms in the germlines of individual humans, chimpanzees and mice, and in cancerous somatic tissues
	24.	Research article Comparative analysis of protein-protein interactions in the defense response of rice and wheat Dario Cantu, Baoju Yang, Randy Ruan, Kun Li, Virginia Menzo, Daolin Fu, Mawsheng Chern, Pamela C Ronald, Jorge Dubcovsky BMC Genomics 2013, 14:166 (12 March 2013) Abstract \| Full text \| PDF \| PubMed
	25.	Research article A distance-field based automatic neuron tracing method Jinzhu Yang, Paloma T Gonzalez-Bellido, Hanchuan Peng BMC Bioinformatics 2013, 14:93 (12 March 2013) Abstract \| Full text \| PDF \| PubMed