51.
Indirect two-sided relative ranking: a robust similarity measure for gene expression data
Louis
Licamele,
Lise
Getoor
BMC Bioinformatics 2010, 11 :137 (17 March 2010)
Abstract | Full text | PDF | PubMed
52.
Detection and correction of false segmental duplications caused by genome mis-assembly
David
R
Kelley,
Steven
L
Salzberg
Genome Biology 2010, 11 :R28 (10 March 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
A method for determining false segmental duplications in vertebrate genomes, thus correcting mis-assemblies and providing more accurate estimates of duplications.
53.
Transcriptional and pathway analysis in the hypothalamus of newly hatched chicks during fasting and delayed feeding
Stacy
E
Higgins,
Laura
E
Ellestad,
Nares
Trakooljul,
Fiona
McCarthy,
Jason
Saliba,
Larry
A
Cogburn,
Tom
E
Porter
BMC Genomics 2010, 11 :162 (9 March 2010)
Abstract | Full text | PDF | PubMed
54.
Assembly complexity of prokaryotic genomes using short reads
Carl
Kingsford,
Michael
C
Schatz,
Mihai
Pop
BMC Bioinformatics 2010, 11 :21 (12 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
55.
Transpositionally active episomal hAT elements
David
A
O'Brochta,
Christina
D
Stosic,
Kristina
Pilitt,
Ramanand
A
Subramanian,
Robert
H
Hice,
Peter
W
Atkinson
BMC Molecular Biology 2009, 10 :108 (14 December 2009)
Abstract | Full text | PDF | PubMed
56.
Use of nfsB , encoding nitroreductase, as a reporter gene to determine the mutational spectrum of spontaneous mutations in Neisseria gonorrhoeae
Daniel
C
Stein,
Esteban
Carrizosa,
Stephen
Dunham
BMC Microbiology 2009, 9 :239 (23 November 2009)
Abstract | Full text | PDF | PubMed
57.
Testing mitochondrial sequences and anonymous nuclear markers for phylogeny reconstruction in a rapidly radiating group: molecular systematics of the Delphininae (Cetacea: Odontoceti: Delphinidae)
Sarah
E
Kingston,
Lara
D
Adams,
Patricia
E
Rosel
BMC Evolutionary Biology 2009, 9 :245 (7 October 2009)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Multilocus amplified fragment length polymorphism (AFLP) analysis is more comprehensive than a standard mitochondrial DNA approach for inferring phylogeny in closely related, rapidly radiating groups such as the dolphin subfamily Delphininae, with AFLP supporting paraphyly for the genera Stenella and Tursiops.
58.
Efficient oligonucleotide probe selection for pan-genomic tiling arrays
Adam
M
Phillippy,
Xiangyu
Deng,
Wei
Zhang,
Steven
L
Salzberg
BMC Bioinformatics 2009, 10 :293 (16 September 2009)
Abstract | Full text | PDF | PubMed
59.
Partial direct contact transmission in ferrets of a mallard H7N3 influenza virus with typical avian-like receptor specificity
Haichen
Song,
Hongquan
Wan,
Yonas
Araya,
Daniel
R
Perez
Virology Journal 2009, 6 :126 (14 August 2009)
Abstract | Full text | PDF | PubMed
60.
Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae)
Richard
H
Baker,
Jenna
Morgan,
Xianhui
Wang,
Jeffrey
L
Boore,
Gerald
S
Wilkinson
BMC Genomics 2009, 10 :361 (5 August 2009)
Abstract | Full text | PDF | PubMed
61.
Molt-inhibiting hormone stimulates vitellogenesis at advanced ovarian developmental stages in the female blue crab, Callinectes sapidus 1: an ovarian stage dependent involvement
Nilli
Zmora,
John
Trant,
Yonathan
Zohar,
J Sook
Chung
Saline Systems 2009, 5 :7 (7 July 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
62.
Molt-inhibiting hormone stimulates vitellogenesis at advanced ovarian developmental stages in the female blue crab, Callinectes sapidus 2: novel specific binding sites in hepatopancreas and cAMP as a second messenger
Nilli
Zmora,
Amir
Sagi,
Yonathan
Zohar,
J Sook
Chung
Saline Systems 2009, 5 :6 (7 July 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
63.
A whole-genome assembly of the domestic cow, Bos taurus
Aleksey
V
Zimin,
Arthur
L
Delcher,
Liliana
Florea,
David
R
Kelley,
Michael
C
Schatz,
Daniela
Puiu,
Finnian
Hanrahan,
Geo
Pertea,
Curtis
P
Van Tassell,
Tad
S
Sonstegard,
Guillaume
Marçais,
Michael
Roberts,
Poorani
Subramanian,
James
A
Yorke,
Steven
L
Salzberg
Genome Biology 2009, 10 :R42 (24 April 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
A cow whole-genome assembly of 2.86 billion base pairs that closes gaps and corrects previously-described inversions and deletions as well as describing a portion of the Y chromosome.
64.
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben
Langmead,
Cole
Trapnell,
Mihai
Pop,
Steven
L
Salzberg
Genome Biology 2009, 10 :R25 (4 March 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Bowtie: a new ultrafast memory-efficient tool for the alignment of short DNA sequence reads to large genomes.
65.
Simple allele-discriminating PCR for cost-effective and rapid genotyping and mapping
Minh
Bui,
Zhongchi
Liu
Plant Methods 2009, 5 :1 (8 January 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
66.
Complete genomic sequence analysis of infectious bronchitis virus Ark DPI strain and its evolution by recombination
Arun
Ammayappan,
Chitra
Upadhyay,
Jack
Gelb,
Vikram
N
Vakharia
Virology Journal 2008, 5 :157 (22 December 2008)
Abstract | Full text | PDF | PubMed
67.
A trehalose 6-phosphate synthase gene of the hemocytes of the blue crab, Callinectes sapidus : cloning, the expression, its enzyme activity and relationship to hemolymph trehalose levels
J Sook
Chung
Saline Systems 2008, 4 :18 (12 December 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
68.
Molecular characterization and complete genome sequence of avian paramyxovirus type 4 prototype strain duck/Hong Kong/D3/75
Baibaswata
Nayak,
Sachin
Kumar,
Peter
L
Collins,
Siba
K
Samal
Virology Journal 2008, 5 :124 (20 October 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
69.
Visual sensitivities tuned by heterochronic shifts in opsin gene expression
Karen
L
Carleton,
Tyrone
C
Spady,
J Todd
Streelman,
Michael
R
Kidd,
William
N
McFarland,
Ellis
R
Loew
BMC Biology 2008, 6 :22 (23 May 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Visual sensitivities between species of Lake Malawi cichlids differ according to developmental shifts in the expression patterns of cone opsin genes, potentially altering which brightly colored males are preferred as mates and driving speciation.
