26.
DNACLUST: accurate and efficient clustering of phylogenetic marker genes
Mohammadreza
Ghodsi,
Bo
Liu,
Mihai
Pop
BMC Bioinformatics 2011, 12 :271 (30 June 2011)
Abstract | Full text | PDF | PubMed
27.
Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity
Jason
W
Sahl,
J Kristie
Johnson,
Anthony
D
Harris,
Adam
M
Phillippy,
William
W
Hsiao,
Kerri
A
Thom,
David
A
Rasko
BMC Genomics 2011, 12 :291 (4 June 2011)
Abstract | Full text | PDF | PubMed | F1000 Biology
28.
Apple skin patterning is associated with differential expression of MYB10
Adriana
Telias,
Kui
Lin-Wang,
David
E
Stevenson,
Janine
M
Cooney,
Roger
P
Hellens,
Andrew
C
Allan,
Emily
E
Hoover,
James
M
Bradeen
BMC Plant Biology 2011, 11 :93 (20 May 2011)
Abstract | Full text | PDF | PubMed
29.
Sequence analysis of fusion protein gene of Newcastle disease virus isolated from outbreaks in Egypt during 2006
Mahmoud
HA
Mohamed,
Sachin
Kumar,
Anandan
Paldurai,
Siba
K
Samal
Virology Journal 2011, 8 :237 (18 May 2011)
Abstract | Full text | PDF | PubMed
30.
Divergence in cis- regulatory sequences surrounding the opsin gene arrays of African cichlid fishes
Kelly
E
O'Quin,
Daniel
Smith,
Zan
Naseer,
Jane
Schulte,
Samuel
D
Engel,
Yong-Hwee
E
Loh,
J Todd
Streelman,
Jeffrey
L
Boore,
Karen
L
Carleton
BMC Evolutionary Biology 2011, 11 :120 (9 May 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
31.
Bacterial community diversity and variation in spray water sources and the tomato fruit surface
Adriana
Telias,
James
R
White,
Donna
M
Pahl,
Andrea
R
Ottesen,
Christopher
S
Walsh
BMC Microbiology 2011, 11 :81 (21 April 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
32.
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
Joshua
Wetzel,
Carl
Kingsford,
Mihai
Pop
BMC Bioinformatics 2011, 12 :95 (13 April 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
33.
Rapid isolation of gene homologs across taxa: Efficient identification and isolation of gene orthologs from non-model organism genomes, a technical report
Alison
Heffer,
Leslie
Pick
EvoDevo 2011, 2 :7 (1 March 2011)
Abstract | Full text | PDF | PubMed
34.
Improved hatchability and efficient protection after in ovo vaccination with live-attenuated H7N2 and H9N2 avian influenza viruses
Yibin
Cai,
Haichen
Song,
Jianqiang
Ye,
Hongxia
Shao,
Rangarajan
Padmanabhan,
Troy
C
Sutton,
Daniel
R
Perez
Virology Journal 2011, 8 :31 (21 January 2011)
Abstract | Full text | PDF | PubMed
35.
Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses
Harin
Kanani,
Bhaskar
Dutta,
Maria
I
Klapa
BMC Systems Biology 2010, 4 :177 (29 December 2010)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
The transcriptional response of Arabidopsis to salinity stress is largely independent of the CO2 concentration, but elevated CO2 slightly alleviates the negative effects of salt on growth by providing additional metabolic resources.
36.
Antithrombotic therapy and outcomes of cervical arterial dissection in the trauma patient: a case series
Holly
E
Hinson,
M
JB
Stallmeyer,
Jon
P
Furuno,
Karen
L
Yarbrough,
John
W
Cole
Journal of Trauma Management & Outcomes 2010, 4 :13 (13 December 2010)
Abstract | Full text | PDF | PubMed
37.
Characterization of influenza virus sialic acid receptors in minor poultry species
Brian
Kimble,
Gloria
Nieto,
Daniel
R
Perez
Virology Journal 2010, 7 :365 (9 December 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
38.
Quake: quality-aware detection and correction of sequencing errors
David
R
Kelley,
Michael
C
Schatz,
Steven
L
Salzberg
Genome Biology 2010, 11 :R116 (29 November 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Quake employs a sophisticated approach to error identification and correction in next generation sequencing data.
39.
Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus )
Lucile
Soler,
Matthew
A
Conte,
Takayuki
Katagiri,
Aimee
E
Howe,
Bo-Young
Lee,
Chris
Amemiya,
Andrew
Stuart,
Carole
Dossat,
Julie
Poulain,
Jeremy
Johnson,
Federica
Di Palma,
Kerstin
Lindblad-Toh,
Jean-Francois
Baroiller,
Helena
D'Cotta,
Catherine
Ozouf-Costaz,
Thomas
D
Kocher
BMC Genomics 2010, 11 :636 (16 November 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
40.
Clustering metagenomic sequences with interpolated Markov models
David
R
Kelley,
Steven
L
Salzberg
BMC Bioinformatics 2010, 11 :544 (2 November 2010)
Abstract | Full text | PDF | PubMed
41.
Self-medication with antibiotics for the treatment of menstrual symptoms in southwest Nigeria: a cross-sectional study
Amy
R
Sapkota,
Morenike
E
Coker,
Rachel
E
Rosenberg Goldstein,
Nancy
L
Atkinson,
Shauna
J
Sweet,
Priscilla
O
Sopeju,
Modupe
T
Ojo,
Elizabeth
Otivhia,
Olayemi
O
Ayepola,
Olufunmiso
O
Olajuyigbe,
Laura
Shireman,
Paul
S
Pottinger,
Kayode
K
Ojo
BMC Public Health 2010, 10 :610 (15 October 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
42.
The non-pathogenic mycobacteria M. smegmatis and M. fortuitum induce rapid host cell apoptosis via a caspase-3 and TNF dependent pathway
Amro
Bohsali,
Hana
Abdalla,
Kamalakannan
Velmurugan,
Volker
Briken
BMC Microbiology 2010, 10 :237 (10 September 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
43.
Asthma and gender impact accumulation of T cell subtypes
Matthew
J
Loza,
Susan
Foster,
Eugene
R
Bleecker,
Stephen
P
Peters,
Raymond
B
Penn
Respiratory Research 2010, 11 :103 (28 July 2010)
Abstract | Full text | PDF | PubMed
44.
Externalizing behavior in early childhood and body mass index from age 2 to 12 years: longitudinal analyses of a prospective cohort study
Sarah
E
Anderson,
Xin
He,
Sarah
Schoppe-Sullivan,
Aviva
Must
BMC Pediatrics 2010, 10 :49 (14 July 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Externalizing behaviors are associated with children's weight status in early childhood and throughout elementary school indicating that, although the magnitude of the effect is modest, the development of anticipatory guidance to parents is necessary.
45.
Complex life forms may arise from electrical processes
Edward
C
Elson
Theoretical Biology and Medical Modelling 2010, 7 :26 (24 June 2010)
Abstract | Full text | PDF | PubMed
46.
Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
Bradd
J
Haley,
Christopher
J
Grim,
Nur
A
Hasan,
Seon-Young
Choi,
Jongsik
Chun,
Thomas
S
Brettin,
David
C
Bruce,
Jean
F
Challacombe,
J Chris
Detter,
Cliff
S
Han,
Anwar
Huq,
Rita
R
Colwell
BMC Microbiology 2010, 10 :154 (27 May 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
47.
Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes
Ruth
E
Timme,
Charles
F
Delwiche
BMC Plant Biology 2010, 10 :96 (25 May 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
48.
Finishing genomes with limited resources: lessons from an ensemble of microbial genomes
Niranjan
Nagarajan,
Christopher
Cook,
MariaPia
Di Bonaventura,
Hong
Ge,
Allen
Richards,
Kimberly
A
Bishop-Lilly,
Robert
DeSalle,
Timothy
D
Read,
Mihai
Pop
BMC Genomics 2010, 11 :242 (16 April 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
49.
A novel soft-tissue in vitro model for bisphosphonate-associated osteonecrosis
MA
Scheper,
R
Chaisuparat,
KJ
Cullen,
TF
Meiller
Fibrogenesis & Tissue Repair 2010, 3 :6 (1 April 2010)
Abstract | Full text | PDF | PubMed
50.
Alignment and clustering of phylogenetic markers - implications for microbial diversity studies
James
R
White,
Saket
Navlakha,
Niranjan
Nagarajan,
Mohammad-Reza
Ghodsi,
Carl
Kingsford,
Mihai
Pop
BMC Bioinformatics 2010, 11 :152 (24 March 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
An assessment of methodologies for clustering sequences into operational taxonomic units demonstrates that small changes in algorithm parameters can lead to inflated estimates of microbial diversity, but semi-supervised clustering can produce a more robust result.