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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Maryland, College Park

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26.

Methodology article   Open Access Highly Accessed

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

Mohammadreza Ghodsi, Bo Liu, Mihai Pop BMC Bioinformatics 2011, 12:271 (30 June 2011)

Abstract | Full text | PDF | PubMed

27.

Research article   Open Access Highly Accessed

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity

Jason W Sahl, J Kristie Johnson, Anthony D Harris, Adam M Phillippy, William W Hsiao, Kerri A Thom, David A Rasko BMC Genomics 2011, 12:291 (4 June 2011)

Abstract | Full text | PDF | PubMed | F1000 Biology

28.

Research article   Open Access

Apple skin patterning is associated with differential expression of MYB10

Adriana Telias, Kui Lin-Wang, David E Stevenson, Janine M Cooney, Roger P Hellens, Andrew C Allan, Emily E Hoover, James M Bradeen BMC Plant Biology 2011, 11:93 (20 May 2011)

Abstract | Full text | PDF | PubMed

29.

Short report   Open Access

Sequence analysis of fusion protein gene of Newcastle disease virus isolated from outbreaks in Egypt during 2006

Mahmoud HA Mohamed, Sachin Kumar, Anandan Paldurai, Siba K Samal Virology Journal 2011, 8:237 (18 May 2011)

Abstract | Full text | PDF | PubMed

30.

Research article   Open Access Highly Accessed

Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes

Kelly E O'Quin, Daniel Smith, Zan Naseer, Jane Schulte, Samuel D Engel, Yong-Hwee E Loh, J Todd Streelman, Jeffrey L Boore, Karen L Carleton BMC Evolutionary Biology 2011, 11:120 (9 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

31.

Research article   Open Access Highly Accessed

Bacterial community diversity and variation in spray water sources and the tomato fruit surface

Adriana Telias, James R White, Donna M Pahl, Andrea R Ottesen, Christopher S Walsh BMC Microbiology 2011, 11:81 (21 April 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

32.

Research article   Open Access Highly Accessed

Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies

Joshua Wetzel, Carl Kingsford, Mihai Pop BMC Bioinformatics 2011, 12:95 (13 April 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

33.

Short report   Open Access

Rapid isolation of gene homologs across taxa: Efficient identification and isolation of gene orthologs from non-model organism genomes, a technical report

Alison Heffer, Leslie Pick EvoDevo 2011, 2:7 (1 March 2011)

Abstract | Full text | PDF | PubMed

34.

Research   Open Access

Improved hatchability and efficient protection after in ovo vaccination with live-attenuated H7N2 and H9N2 avian influenza viruses

Yibin Cai, Haichen Song, Jianqiang Ye, Hongxia Shao, Rangarajan Padmanabhan, Troy C Sutton, Daniel R Perez Virology Journal 2011, 8:31 (21 January 2011)

Abstract | Full text | PDF | PubMed

35.

Research article   Open Access

Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses

Harin Kanani, Bhaskar Dutta, Maria I Klapa BMC Systems Biology 2010, 4:177 (29 December 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The transcriptional response of Arabidopsis to salinity stress is largely independent of the CO2 concentration, but elevated CO2 slightly alleviates the negative effects of salt on growth by providing additional metabolic resources.

36.

Research   Open Access

Antithrombotic therapy and outcomes of cervical arterial dissection in the trauma patient: a case series

Holly E Hinson, M JB Stallmeyer, Jon P Furuno, Karen L Yarbrough, John W Cole Journal of Trauma Management & Outcomes 2010, 4:13 (13 December 2010)

Abstract | Full text | PDF | PubMed

37.

Research   Open Access Highly Accessed

Characterization of influenza virus sialic acid receptors in minor poultry species

Brian Kimble, Gloria Nieto, Daniel R Perez Virology Journal 2010, 7:365 (9 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

38.

Software   Open Access Highly Accessed

Quake: quality-aware detection and correction of sequencing errors

David R Kelley, Michael C Schatz, Steven L Salzberg Genome Biology 2010, 11:R116 (29 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Quake employs a sophisticated approach to error identification and correction in next generation sequencing data.

39.

Research article   Open Access

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

Lucile Soler, Matthew A Conte, Takayuki Katagiri, Aimee E Howe, Bo-Young Lee, Chris Amemiya, Andrew Stuart, Carole Dossat, Julie Poulain, Jeremy Johnson, Federica Di Palma, Kerstin Lindblad-Toh, Jean-Francois Baroiller, Helena D'Cotta, Catherine Ozouf-Costaz, Thomas D Kocher BMC Genomics 2010, 11:636 (16 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

40.

Methodology article   Open Access Highly Accessed

Clustering metagenomic sequences with interpolated Markov models

David R Kelley, Steven L Salzberg BMC Bioinformatics 2010, 11:544 (2 November 2010)

Abstract | Full text | PDF | PubMed

41.

Research article   Open Access

Self-medication with antibiotics for the treatment of menstrual symptoms in southwest Nigeria: a cross-sectional study

Amy R Sapkota, Morenike E Coker, Rachel E Rosenberg Goldstein, Nancy L Atkinson, Shauna J Sweet, Priscilla O Sopeju, Modupe T Ojo, Elizabeth Otivhia, Olayemi O Ayepola, Olufunmiso O Olajuyigbe, Laura Shireman, Paul S Pottinger, Kayode K Ojo BMC Public Health 2010, 10:610 (15 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

42.

Research article   Open Access Highly Accessed

The non-pathogenic mycobacteria M. smegmatis and M. fortuitum induce rapid host cell apoptosis via a caspase-3 and TNF dependent pathway

Amro Bohsali, Hana Abdalla, Kamalakannan Velmurugan, Volker Briken BMC Microbiology 2010, 10:237 (10 September 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

43.

Research   Open Access Highly Accessed

Asthma and gender impact accumulation of T cell subtypes

Matthew J Loza, Susan Foster, Eugene R Bleecker, Stephen P Peters, Raymond B Penn Respiratory Research 2010, 11:103 (28 July 2010)

Abstract | Full text | PDF | PubMed

44.

Research article   Open Access Highly Accessed

Externalizing behavior in early childhood and body mass index from age 2 to 12 years: longitudinal analyses of a prospective cohort study

Sarah E Anderson, Xin He, Sarah Schoppe-Sullivan, Aviva Must BMC Pediatrics 2010, 10:49 (14 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Externalizing behaviors are associated with children's weight status in early childhood and throughout elementary school indicating that, although the magnitude of the effect is modest, the development of anticipatory guidance to parents is necessary.

45.

Research   Open Access

Complex life forms may arise from electrical processes

Edward C Elson Theoretical Biology and Medical Modelling 2010, 7:26 (24 June 2010)

Abstract | Full text | PDF | PubMed

46.

Research article   Open Access Highly Accessed

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae

Bradd J Haley, Christopher J Grim, Nur A Hasan, Seon-Young Choi, Jongsik Chun, Thomas S Brettin, David C Bruce, Jean F Challacombe, J Chris Detter, Cliff S Han, Anwar Huq, Rita R Colwell BMC Microbiology 2010, 10:154 (27 May 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

47.

Research article   Open Access

Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

Ruth E Timme, Charles F Delwiche BMC Plant Biology 2010, 10:96 (25 May 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

48.

Correspondence   Open Access Highly Accessed

Finishing genomes with limited resources: lessons from an ensemble of microbial genomes

Niranjan Nagarajan, Christopher Cook, MariaPia Di Bonaventura, Hong Ge, Allen Richards, Kimberly A Bishop-Lilly, Robert DeSalle, Timothy D Read, Mihai Pop BMC Genomics 2010, 11:242 (16 April 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

49.

Research   Open Access

A novel soft-tissue in vitro model for bisphosphonate-associated osteonecrosis

MA Scheper, R Chaisuparat, KJ Cullen, TF Meiller Fibrogenesis & Tissue Repair 2010, 3:6 (1 April 2010)

Abstract | Full text | PDF | PubMed

50.

Research article   Open Access Highly Accessed

Alignment and clustering of phylogenetic markers - implications for microbial diversity studies

James R White, Saket Navlakha, Niranjan Nagarajan, Mohammad-Reza Ghodsi, Carl Kingsford, Mihai Pop BMC Bioinformatics 2010, 11:152 (24 March 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

An assessment of methodologies for clustering sequences into operational taxonomic units demonstrates that small changes in algorithm parameters can lead to inflated estimates of microbial diversity, but semi-supervised clustering can produce a more robust result.

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