1.
A system-level, molecular evolutionary analysis of
mammalian phototransduction
Brandon
M
Invergo,
Ludovica
Montanucci,
Hafid
Laayouni,
Jaume
Bertranpetit
BMC Evolutionary Biology 2013, 13 :52 (23 February 2013)
Abstract | Provisional PDF
| PubMed
2.
A loss-of-function CACNA1A mutation causing benign paroxysmal torticollis of infancy
M
Vila-Pueyo,
C
Sintas,
M
Flotats,
G
Gené,
X
Elorza,
JM
Fernández-Fernández,
B
Cormand,
A
Macaya
The Journal of Headache and Pain 2013, $article.volume.volumeNumber (Suppl 1):P24 (21 February 2013)
Full text | PDF
3.
Emergence of novel domains in proteins
Macarena
Toll-Riera,
M
Mar
Albà
BMC Evolutionary Biology 2013, 13 :47 (20 February 2013)
Abstract | Provisional PDF
| PubMed
4.
Visualizing multidimensional cancer genomics data
Michael
P
Schroeder,
Abel
Gonzalez-Perez,
Nuria
Lopez-Bigas
Genome Medicine 2013, 5 :9 (31 January 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Nuria Lopez-Bigas and colleagues review the visualization tools that allow cancer genomics researchers to extract useful knowledge from the data generated by high-throughput technologies.
5.
The influence of habitats on female mobility in Central and Western Africa inferred from human mitochondrial variation
Valeria
Montano,
Veronica
Marcari,
Mariano
Pavanello,
Okorie
Anyaele,
David
Comas,
Giovanni
Destro-Bisol,
Chiara
Batini
BMC Evolutionary Biology 2013, 13 :24 (29 January 2013)
Abstract | Provisional PDF
| PubMed
6.
Accelerated exon evolution within primate segmental duplications
Belen
Lorente-Galdos,
Jonathan
Bleyhl,
Gabriel
Santpere,
Laura
Vives,
Oscar
Ramirez,
Jessica
Hernandez,
Roger
Anglada,
Gregory
M
Cooper,
Arcadi
Navarro,
Evan
E
Eichler,
Tomas
Marques-Bonet
Genome Biology 2013, 14 :R9 (29 January 2013)
Abstract | Provisional PDF
| PubMed
|
Editor’s summary
A new study looks at segmental duplication genes in humans and macaques to elucidate exon evolution in primates
7.
Environmental exposure assessment in European birth cohorts: results from the ENRIECO project
Ulrike
Gehring,
Maribel
Casas,
Bert
Brunekreef,
Anna
Bergström,
Jens Peter
Bonde,
Jérémie
Botton,
Cecile
Chévrier,
Sylvaine
Cordier,
Joachim
Heinrich,
Cynthia
Hohmann,
Thomas
Keil,
Jordi
Sunyer,
Christina
G
Tischer,
Gunnar
Toft,
Magnus
Wickman,
Martine
Vrijheid,
Mark
Nieuwenhuijsen
Environmental Health 2013, 12 :8 (23 January 2013)
Abstract | Full text | PDF | PubMed
8.
Sum of parts is greater than the whole: inference of common genetic history of populations
Filippo
Utro,
Marc
Pybus,
Laxmi
Parida
BMC Genomics 2013, 14 (Suppl 1):S10 (21 January 2013)
Abstract | Full text | PDF | PubMed
9.
GSVA: gene set variation analysis for microarray and RNA-Seq data
Sonja
Hänzelmann,
Robert
Castelo,
Justin
Guinney
BMC Bioinformatics 2013, 14 :7 (16 January 2013)
Abstract | Provisional PDF
| PubMed
10.
Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing
Emily
Su,
Jia-Ming
Chang,
Cheng-Wei
Cheng,
Ting-Yi
Sung,
Wen-Lian
Hsu
BMC Bioinformatics 2012, 13 (Suppl 17):S13 (13 December 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
11.
Specific IgA and metalloproteinase activity in bronchial secretions from stable chronic obstructive pulmonary disease patients colonized by Haemophilus influenzae
Laura
Millares,
Alicia
Marin,
Judith
Garcia-Aymerich,
Jaume
Sauleda,
José
Belda,
Eduard
Monsó,
Respiratory Research 2012, 13 :113 (11 December 2012)
Abstract | Full text | PDF | PubMed
12.
Human genes with CpG island promoters have a distinct transcription-associated chromatin organization
Tanya
Vavouri,
Ben
Lehner
Genome Biology 2012, 13 :R110 (27 November 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A study of the chromatin architecture at promoters reveals different histone modifications at those with CpG islands and those without
13.
Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation
Abel
Gonzalez-Perez,
Jordi
Deu-Pons,
Nuria
Lopez-Bigas
Genome Medicine 2012, 4 :89 (26 November 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Cancer genome projects need to identify cancer-causing variants; a new method improves the assessment of the functional impact of SNVs by including the baseline tolerance of genes to mutations.
14.
Genome sequence of the necrotrophic fungus Penicillium digitatum , the main postharvest pathogen of citrus
Marina
Marcet-Houben,
Ana-Rosa
Ballester,
Beatriz
de la Fuente,
Eleonora
Harries,
Jose
F
Marcos,
Luis
González-Candelas,
Toni
Gabaldón
BMC Genomics 2012, 13 :646 (21 November 2012)
Abstract | Full text | PDF | PubMed
15.
Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling
Mariona
Nadal-Ribelles,
Núria
Conde,
Oscar
Flores,
Juan
González-Vallinas,
Eduardo
Eyras,
Modesto
Orozco,
Eulàlia
de Nadal,
Francesc
Posas
Genome Biology 2012, 13 :R106 (18 November 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Hog1 bypasses gene expression regulation by targeting RNA polymerase II machinery and inducing chromatin remodeling at stress-responsive loci
16.
The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite’s biology
Larissa
Silva,
Marina
Marcet-Houben,
Laila
Nahum,
Adhemar
Zerlotini,
Toni
Gabaldón,
Guilherme
Oliveira
BMC Genomics 2012, 13 :617 (13 November 2012)
Abstract | Full text | PDF | PubMed
17.
CMV and Immunosenescence: from basics to clinics
Rafael
Solana,
Raquel
Tarazona,
Allison
E
Aiello,
Arne
N
Akbar,
Victor
Appay,
Mark
Beswick,
Jos
A
Bosch,
Carmen
Campos,
Sara
Cantisán,
Luka
Cicin-Sain,
Evelyna
Derhovanessian,
Sara
Ferrando-Martínez,
Daniela
Frasca,
Tamas
Fulöp,
Sheila
Govind,
Beatrix
Grubeck-Loebenstein,
Ann
Hill,
Mikko
Hurme,
Florian
Kern,
Anis
Larbi,
Miguel
López-Botet,
Andrea
B
Maier,
Janet
E
McElhaney,
Paul
Moss,
Elissaveta
Naumova,
Janko
Nikolich-Zugich,
Alejandra
Pera,
Jerrald
L
Rector,
Natalie
Riddell,
Beatriz
Sanchez-Correa,
Paolo
Sansoni,
Delphine
Sauce,
Rene
van Lier,
George
C
Wang,
Mark
R
Wills,
Maciej
Zieliński,
Graham
Pawelec
et al.
Immunity & Ageing 2012, 9 :23 (31 October 2012)
Abstract | Full text | PDF | PubMed
18.
Comparative phylogeography and demographic history of European shads (Alosa alosa and A. fallax ) inferred from mitochondrial DNA
Rui
Faria,
Steven
Weiss,
Paulo
Alexandrino
BMC Evolutionary Biology 2012, 12 :194 (30 September 2012)
Abstract | Full text | PDF | PubMed
19.
Dissecting the role of low-complexity regions in the evolution of vertebrate proteins
Núria
Radó-Trilla,
MMar
Albà
BMC Evolutionary Biology 2012, 12 :155 (24 August 2012)
Abstract | Full text | PDF | PubMed
20.
Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
Eric
Talevich,
Brandon
M
Invergo,
Peter
JA
Cock,
Brad
A
Chapman
BMC Bioinformatics 2012, 13 :209 (21 August 2012)
Abstract | Full text | PDF | PubMed
21.
Genome-wide CNV analysis replicates the association between GSTM1 deletion and bladder cancer: a support for using continuous measurement from SNP-array data
Gaëlle
Marenne,
Francisco
X
Real,
Nathaniel
Rothman,
Benjamin
Rodríguez-Santiago,
Luis
Pérez-Jurado,
Manolis
Kogevinas,
Montse
García-Closas,
Debra
T
Silverman,
Stephen
J
Chanock,
Emmanuelle
Génin,
Núria
Malats
BMC Genomics 2012, 13 :326 (20 July 2012)
Abstract | Full text | PDF | PubMed
22.
Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation
Giovanni
Dall’Olio,
Hafid
Laayouni,
Pierre
Luisi,
Martin
Sikora,
Ludovica
Montanucci,
Jaume
Bertranpetit
BMC Evolutionary Biology 2012, 12 :98 (25 June 2012)
Abstract | Full text | PDF | PubMed
23.
Functional and topological characterization of transcriptional cooperativity in yeast
Daniel
Aguilar,
Baldo
Oliva
BMC Research Notes 2012, 5 :227 (10 May 2012)
Abstract | Full text | PDF | PubMed
24.
Myxobacteria: natural pharmaceutical factories
Juana
Diez,
Javier
P
Martinez,
Jordi
Mestres,
Florenz
Sasse,
Ronald
Frank,
Andreas
Meyerhans
Microbial Cell Factories 2012, 11 :52 (30 April 2012)
Abstract | Full text | PDF | PubMed
25.
Stable multi-infection of splenocytes during SIV infection - the basis for continuous recombination
Anke
Schultz,
Sieghart
Sopper,
Ulrike
Sauermann,
Andreas
Meyerhans,
Rodolphe
Suspène
Retrovirology 2012, 9 :31 (23 April 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
SIV multi-infection of single splenocytes was readily detected in all monkeys and all stages of the infection. Single-infected cells were more frequent than double or triple infected cells. There was no strong trend linking the copy number distribution to plasma viral load, disease stage or CD4 cell counts.