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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Universitat Pompeu Fabra

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	1.	Research article A system-level, molecular evolutionary analysis of mammalian phototransduction Brandon M Invergo, Ludovica Montanucci, Hafid Laayouni, Jaume Bertranpetit BMC Evolutionary Biology 2013, 13:52 (23 February 2013) Abstract \| Provisional PDF \| PubMed
	2.	Poster presentation A loss-of-function CACNA1A mutation causing benign paroxysmal torticollis of infancy M Vila-Pueyo, C Sintas, M Flotats, G Gené, X Elorza, JM Fernández-Fernández, B Cormand, A Macaya The Journal of Headache and Pain 2013, $article.volume.volumeNumber(Suppl 1):P24 (21 February 2013) Full text \| PDF
	3.	Research article Emergence of novel domains in proteins Macarena Toll-Riera, M Mar Albà BMC Evolutionary Biology 2013, 13:47 (20 February 2013) Abstract \| Provisional PDF \| PubMed
	4.	Review Visualizing multidimensional cancer genomics data Michael P Schroeder, Abel Gonzalez-Perez, Nuria Lopez-Bigas Genome Medicine 2013, 5:9 (31 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Nuria Lopez-Bigas and colleagues review the visualization tools that allow cancer genomics researchers to extract useful knowledge from the data generated by high-throughput technologies.
	5.	Research article The influence of habitats on female mobility in Central and Western Africa inferred from human mitochondrial variation Valeria Montano, Veronica Marcari, Mariano Pavanello, Okorie Anyaele, David Comas, Giovanni Destro-Bisol, Chiara Batini BMC Evolutionary Biology 2013, 13:24 (29 January 2013) Abstract \| Provisional PDF \| PubMed
	6.	Research Accelerated exon evolution within primate segmental duplications Belen Lorente-Galdos, Jonathan Bleyhl, Gabriel Santpere, Laura Vives, Oscar Ramirez, Jessica Hernandez, Roger Anglada, Gregory M Cooper, Arcadi Navarro, Evan E Eichler, Tomas Marques-Bonet Genome Biology 2013, 14:R9 (29 January 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary A new study looks at segmental duplication genes in humans and macaques to elucidate exon evolution in primates
	7.	Review Environmental exposure assessment in European birth cohorts: results from the ENRIECO project Ulrike Gehring, Maribel Casas, Bert Brunekreef, Anna Bergström, Jens Peter Bonde, Jérémie Botton, Cecile Chévrier, Sylvaine Cordier, Joachim Heinrich, Cynthia Hohmann, Thomas Keil, Jordi Sunyer, Christina G Tischer, Gunnar Toft, Magnus Wickman, Martine Vrijheid, Mark Nieuwenhuijsen Environmental Health 2013, 12:8 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Proceedings Sum of parts is greater than the whole: inference of common genetic history of populations Filippo Utro, Marc Pybus, Laxmi Parida BMC Genomics 2013, 14(Suppl 1):S10 (21 January 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Software GSVA: gene set variation analysis for microarray and RNA-Seq data Sonja Hänzelmann, Robert Castelo, Justin Guinney BMC Bioinformatics 2013, 14:7 (16 January 2013) Abstract \| Provisional PDF \| PubMed
	10.	Proceedings Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing Emily Su, Jia-Ming Chang, Cheng-Wei Cheng, Ting-Yi Sung, Wen-Lian Hsu BMC Bioinformatics 2012, 13(Suppl 17):S13 (13 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	11.	Research Specific IgA and metalloproteinase activity in bronchial secretions from stable chronic obstructive pulmonary disease patients colonized by Haemophilus influenzae Laura Millares, Alicia Marin, Judith Garcia-Aymerich, Jaume Sauleda, José Belda, Eduard Monsó, Respiratory Research 2012, 13:113 (11 December 2012) Abstract \| Full text \| PDF \| PubMed
	12.	Research Human genes with CpG island promoters have a distinct transcription-associated chromatin organization Tanya Vavouri, Ben Lehner Genome Biology 2012, 13:R110 (27 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A study of the chromatin architecture at promoters reveals different histone modifications at those with CpG islands and those without
	13.	Method Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation Abel Gonzalez-Perez, Jordi Deu-Pons, Nuria Lopez-Bigas Genome Medicine 2012, 4:89 (26 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Cancer genome projects need to identify cancer-causing variants; a new method improves the assessment of the functional impact of SNVs by including the baseline tolerance of genes to mutations.
	14.	Research article *Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus* Marina Marcet-Houben, Ana-Rosa Ballester, Beatriz de la Fuente, Eleonora Harries, Jose F Marcos, Luis González-Candelas, Toni Gabaldón BMC Genomics 2012, 13:646 (21 November 2012) Abstract \| Full text \| PDF \| PubMed
	15.	Research Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling Mariona Nadal-Ribelles, Núria Conde, Oscar Flores, Juan González-Vallinas, Eduardo Eyras, Modesto Orozco, Eulàlia de Nadal, Francesc Posas Genome Biology 2012, 13:R106 (18 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Hog1 bypasses gene expression regulation by targeting RNA polymerase II machinery and inducing chromatin remodeling at stress-responsive loci
	16.	Research article *The Schistosoma mansoni* phylome: using evolutionary genomics to gain insight into a parasite’s biology** Larissa Silva, Marina Marcet-Houben, Laila Nahum, Adhemar Zerlotini, Toni Gabaldón, Guilherme Oliveira BMC Genomics 2012, 13:617 (13 November 2012) Abstract \| Full text \| PDF \| PubMed
	17.	Review CMV and Immunosenescence: from basics to clinics Rafael Solana, Raquel Tarazona, Allison E Aiello, Arne N Akbar, Victor Appay, Mark Beswick, Jos A Bosch, Carmen Campos, Sara Cantisán, Luka Cicin-Sain, Evelyna Derhovanessian, Sara Ferrando-Martínez, Daniela Frasca, Tamas Fulöp, Sheila Govind, Beatrix Grubeck-Loebenstein, Ann Hill, Mikko Hurme, Florian Kern, Anis Larbi, Miguel López-Botet, Andrea B Maier, Janet E McElhaney, Paul Moss, Elissaveta Naumova, Janko Nikolich-Zugich, Alejandra Pera, Jerrald L Rector, Natalie Riddell, Beatriz Sanchez-Correa, Paolo Sansoni, Delphine Sauce, Rene van Lier, George C Wang, Mark R Wills, Maciej Zieliński, Graham Pawelec et al. Immunity & Ageing 2012, 9:23 (31 October 2012) Abstract \| Full text \| PDF \| PubMed
	18.	Research article *Comparative phylogeography and demographic history of European shads (Alosa alosa* and A. fallax) inferred from mitochondrial DNA** Rui Faria, Steven Weiss, Paulo Alexandrino BMC Evolutionary Biology 2012, 12:194 (30 September 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Research article Dissecting the role of low-complexity regions in the evolution of vertebrate proteins Núria Radó-Trilla, MMar Albà BMC Evolutionary Biology 2012, 12:155 (24 August 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Software Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython Eric Talevich, Brandon M Invergo, Peter JA Cock, Brad A Chapman BMC Bioinformatics 2012, 13:209 (21 August 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Methodology article *Genome-wide CNV analysis replicates the association between GSTM1* deletion and bladder cancer: a support for using continuous measurement from SNP-array data** Gaëlle Marenne, Francisco X Real, Nathaniel Rothman, Benjamin Rodríguez-Santiago, Luis Pérez-Jurado, Manolis Kogevinas, Montse García-Closas, Debra T Silverman, Stephen J Chanock, Emmanuelle Génin, Núria Malats BMC Genomics 2012, 13:326 (20 July 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research article Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation Giovanni Dall’Olio, Hafid Laayouni, Pierre Luisi, Martin Sikora, Ludovica Montanucci, Jaume Bertranpetit BMC Evolutionary Biology 2012, 12:98 (25 June 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Short Report Functional and topological characterization of transcriptional cooperativity in yeast Daniel Aguilar, Baldo Oliva BMC Research Notes 2012, 5:227 (10 May 2012) Abstract \| Full text \| PDF \| PubMed
	24.	Commentary Myxobacteria: natural pharmaceutical factories Juana Diez, Javier P Martinez, Jordi Mestres, Florenz Sasse, Ronald Frank, Andreas Meyerhans Microbial Cell Factories 2012, 11:52 (30 April 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Research Stable multi-infection of splenocytes during SIV infection - the basis for continuous recombination Anke Schultz, Sieghart Sopper, Ulrike Sauermann, Andreas Meyerhans, Rodolphe Suspène Retrovirology 2012, 9:31 (23 April 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary SIV multi-infection of single splenocytes was readily detected in all monkeys and all stages of the infection. Single-infected cells were more frequent than double or triple infected cells. There was no strong trend linking the copy number distribution to plasma viral load, disease stage or CD4 cell counts.