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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Universitat Pompeu Fabra

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	1.	Research Exploring the rate-limiting steps in visual phototransduction recovery by bottom-up kinetic modeling Brandon M Invergo, Ludovica Montanucci, Karl-Wilhelm Koch, Jaume Bertranpetit, Daniele Dell¿Orco Cell Communication and Signaling 2013, 11:36 (21 May 2013) Abstract \| Provisional PDF
	2.	Research article Do socioeconomic inequalities in mortality vary between different Spanish cities? a pooled cross-sectional analysis Miguel A Martinez-Beneito, Oscar Zurriaga, Paloma Botella-Rocamora, Marc Marí-Dell'Olmo, Andreu Nolasco, Joaquín Moncho, Antonio Daponte, M Domínguez-Berjón, Ana Gandarillas, Carmen Martos, Imanol Montoya, Pablo Sánchez-Villegas, Margarita Taracido, Carme Borrell BMC Public Health 2013, 13:480 (16 May 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research article Dynamic cross-regulation of antigen-specific effector and regulatory T cell subpopulations and microglia in brain autoimmunity Sara Martinez-Pasamar, Elena Abad, Beatriz Moreno, Nieves Velez de Mendizabal, Ivan Martinez-Forero, Jordi Garcia-Ojalvo, Pablo Villoslada BMC Systems Biology 2013, 7:34 (26 April 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research article Worldwide population distribution of the common LCE3C-LCE3B deletion associated with psoriasis and other autoimmune disorders Laia Bassaganyas, Eva Riveira-Muñoz, Manel García-Aragonés, Juan R González, Mario Cáceres, Lluís Armengol, Xavier Estivill BMC Genomics 2013, 14:261 (17 April 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research Diversity of transposable elements and repeats in a 600 kb region of the fly Calliphora vicina Bárbara Negre, Pat Simpson Mobile DNA 2013, 4:13 (3 April 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Research Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes Pedro G Ferreira, Solenn Patalano, Ritika Chauhan, Richard Ffrench-Constant, Toni Gabaldón, Roderic Guigó, Seirian Sumner Genome Biology 2013, 14:R20 (26 February 2013) Abstract \| Provisional PDF \| PubMed \| 2 comments \| Editor’s summary An RNA-seq analysis of the genetic mechanisms controlling alternative phenotypes in the primitive eusocial wasp Polistes canadensis
	7.	Research article Comparative transcriptomics of early dipteran development Eva Jiménez-Guri, Jaime Huerta-Cepas, Luca Cozzuto, Karl R Wotton, Hui Kang, Heinz Himmelbauer, Guglielmo Roma, Toni Gabaldón, Johannes Jaeger BMC Genomics 2013, 14:123 (24 February 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Research article A system-level, molecular evolutionary analysis of mammalian phototransduction Brandon M Invergo, Ludovica Montanucci, Hafid Laayouni, Jaume Bertranpetit BMC Evolutionary Biology 2013, 13:52 (23 February 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Poster presentation A loss-of-function CACNA1A mutation causing benign paroxysmal torticollis of infancy M Vila-Pueyo, C Sintas, M Flotats, G Gené, X Elorza, JM Fernández-Fernández, B Cormand, A Macaya The Journal of Headache and Pain 2013, $article.volume.volumeNumber(Suppl 1):P24 (21 February 2013) Full text \| PDF
	10.	Research article Emergence of novel domains in proteins Macarena Toll-Riera, M Mar Albà BMC Evolutionary Biology 2013, 13:47 (20 February 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Review Visualizing multidimensional cancer genomics data Michael P Schroeder, Abel Gonzalez-Perez, Nuria Lopez-Bigas Genome Medicine 2013, 5:9 (31 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Nuria Lopez-Bigas and colleagues review the visualization tools that allow cancer genomics researchers to extract useful knowledge from the data generated by high-throughput technologies.
	12.	Research article The influence of habitats on female mobility in Central and Western Africa inferred from human mitochondrial variation Valeria Montano, Veronica Marcari, Mariano Pavanello, Okorie Anyaele, David Comas, Giovanni Destro-Bisol, Chiara Batini BMC Evolutionary Biology 2013, 13:24 (29 January 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Research Accelerated exon evolution within primate segmental duplications Belen Lorente-Galdos, Jonathan Bleyhl, Gabriel Santpere, Laura Vives, Oscar Ramírez, Jessica Hernandez, Roger Anglada, Gregory M Cooper, Arcadi Navarro, Evan E Eichler, Tomas Marques-Bonet Genome Biology 2013, 14:R9 (29 January 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary A new study looks at segmental duplication genes in humans and macaques to elucidate exon evolution in primates
	14.	Review Environmental exposure assessment in European birth cohorts: results from the ENRIECO project Ulrike Gehring, Maribel Casas, Bert Brunekreef, Anna Bergström, Jens Peter Bonde, Jérémie Botton, Cecile Chévrier, Sylvaine Cordier, Joachim Heinrich, Cynthia Hohmann, Thomas Keil, Jordi Sunyer, Christina G Tischer, Gunnar Toft, Magnus Wickman, Martine Vrijheid, Mark Nieuwenhuijsen Environmental Health 2013, 12:8 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	15.	Proceedings Sum of parts is greater than the whole: inference of common genetic history of populations Filippo Utro, Marc Pybus, Laxmi Parida BMC Genomics 2013, 14(Suppl 1):S10 (21 January 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	16.	Software GSVA: gene set variation analysis for microarray and RNA-Seq data Sonja Hänzelmann, Robert Castelo, Justin Guinney BMC Bioinformatics 2013, 14:7 (16 January 2013) Abstract \| Full text \| PDF \| PubMed
	17.	Research The B cell transcription program mediates hypomethylation and overexpression of key genes in Epstein-Barr virus-associated proliferative conversion Henar Hernando, Claire Shannon-Lowe, Abul B Islam, Fatima Al-Shahrour, Javier Rodríguez-Ubreva, Virginia C Rodríguez-Cortez, Biola M Javierre, Cristina Mangas, Agustín F Fernández, Maribel Parra, Henri-Jacques Delecluse, Manel Esteller, Eduardo López-Granados, Mario F Fraga, Nuria López-Bigas, Esteban Ballestar Genome Biology 2013, 14:R3 (15 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary DNA hypomethylation is a key feature of Epstein-Barr virus-associated B cell proliferative transformation, and occurs via a passive demethylation process
	18.	Proceedings Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing Emily Su, Jia-Ming Chang, Cheng-Wei Cheng, Ting-Yi Sung, Wen-Lian Hsu BMC Bioinformatics 2012, 13(Suppl 17):S13 (13 December 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	19.	Research Specific IgA and metalloproteinase activity in bronchial secretions from stable chronic obstructive pulmonary disease patients colonized by Haemophilus influenzae Laura Millares, Alicia Marin, Judith Garcia-Aymerich, Jaume Sauleda, José Belda, Eduard Monsó, Respiratory Research 2012, 13:113 (11 December 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Research Human genes with CpG island promoters have a distinct transcription-associated chromatin organization Tanya Vavouri, Ben Lehner Genome Biology 2012, 13:R110 (27 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A study of the chromatin architecture at promoters reveals different histone modifications at those with CpG islands and those without
	21.	Method Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation Abel Gonzalez-Perez, Jordi Deu-Pons, Nuria Lopez-Bigas Genome Medicine 2012, 4:89 (26 November 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Cancer genome projects need to identify cancer-causing variants; a new method improves the assessment of the functional impact of SNVs by including the baseline tolerance of genes to mutations.
	22.	Research article *Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus* Marina Marcet-Houben, Ana-Rosa Ballester, Beatriz de la Fuente, Eleonora Harries, Jose F Marcos, Luis González-Candelas, Toni Gabaldón BMC Genomics 2012, 13:646 (21 November 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling Mariona Nadal-Ribelles, Núria Conde, Oscar Flores, Juan González-Vallinas, Eduardo Eyras, Modesto Orozco, Eulàlia de Nadal, Francesc Posas Genome Biology 2012, 13:R106 (18 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Hog1 bypasses gene expression regulation by targeting RNA polymerase II machinery and inducing chromatin remodeling at stress-responsive loci
	24.	Research article *The Schistosoma mansoni* phylome: using evolutionary genomics to gain insight into a parasite’s biology** Larissa Silva, Marina Marcet-Houben, Laila Nahum, Adhemar Zerlotini, Toni Gabaldón, Guilherme Oliveira BMC Genomics 2012, 13:617 (13 November 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Review CMV and Immunosenescence: from basics to clinics Rafael Solana, Raquel Tarazona, Allison E Aiello, Arne N Akbar, Victor Appay, Mark Beswick, Jos A Bosch, Carmen Campos, Sara Cantisán, Luka Cicin-Sain, Evelyna Derhovanessian, Sara Ferrando-Martínez, Daniela Frasca, Tamas Fulöp, Sheila Govind, Beatrix Grubeck-Loebenstein, Ann Hill, Mikko Hurme, Florian Kern, Anis Larbi, Miguel López-Botet, Andrea B Maier, Janet E McElhaney, Paul Moss, Elissaveta Naumova, Janko Nikolich-Zugich, Alejandra Pera, Jerrald L Rector, Natalie Riddell, Beatriz Sanchez-Correa, Paolo Sansoni, Delphine Sauce, Rene van Lier, George C Wang, Mark R Wills, Maciej Zieliński, Graham Pawelec et al. Immunity & Ageing 2012, 9:23 (31 October 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central