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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Utah

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226.

Research   Open Access

A study of the TNF/LTA/LTB locus and susceptibility to severe malaria in highland papuan children and adults

Louise M Randall, Enny Kenangalem, Daniel A Lampah, Emiliana Tjitra, Esther D Mwaikambo, Tjandra Handojo, Kim A Piera, Zhen Z Zhao, Fabian de Labastida Rivera, Yonghong Zhou, Karli M McSweeney, Lien Le, Fiona H Amante, Ashraful Haque, Amanda C Stanley, Tonia Woodberry, Ervi Salwati, Donald L Granger, Maurine R Hobbs, Ric N Price, J Brice Weinberg, Grant W Montgomery, Nicholas M Anstey, Christian R Engwerda Malaria Journal 2010, 9:302 (29 October 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Only a fraction of falciparum infections develop into severe malaria, implicating host genetic factors as important determinants of disease outcome. This paper shows that there is no association with SNPs in the TNF region and severe malaria in a cohort of Papuan children and adults.

227.

Research article   Open Access Highly Accessed

Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages

Kenneth G Karol, Kathiravetpillai Arumuganathan, Jeffrey L Boore, Aaron M Duffy, Karin DE Everett, John D Hall, S Hansen, Jennifer V Kuehl, Dina F Mandoli, Brent D Mishler, Richard G Olmstead, Karen S Renzaglia, Paul G Wolf BMC Evolutionary Biology 2010, 10:321 (23 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

228.

Research   Open Access

Valuation of scleroderma and psoriatic arthritis health states by the general public

Dinesh Khanna, Tracy Frech, Puja P Khanna, Robert M Kaplan, Mark H Eckman, Ron D Hays, Shaari S Ginsburg, Anthony C Leonard, Joel Tsevat Health and Quality of Life Outcomes 2010, 8:112 (1 October 2010)

Abstract | Full text | PDF | PubMed

229.

Research   Open Access

Assessing changes in vascular permeability in a hamster model of viral hemorrhagic fever

Brian B Gowen, Justin G Julander, Nyall R London, Min-Hui Wong, Deanna Larson, John D Morrey, Dean Y Li, Mike Bray Virology Journal 2010, 7:240 (16 September 2010)

Abstract | Full text | PDF | PubMed

230.

Software   Open Access Highly Accessed

Next generation tools for genomic data generation, distribution, and visualization

David A Nix, Tonya L Di Sera, Brian K Dalley, Brett A Milash, Robert M Cundick, Kevin S Quinn, Samir J Courdy BMC Bioinformatics 2010, 11:455 (9 September 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

231.

Method   Open Access Highly Accessed

A standard variation file format for human genome sequences

Martin G Reese, Barry Moore, Colin Batchelor, Fidel Salas, Fiona Cunningham, Gabor T Marth, Lincoln Stein, Paul Flicek, Mark Yandell, Karen Eilbeck Genome Biology 2010, 11:R88 (26 August 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The genome variation format (GVF) and the 10Gen dataset provide a resource for the standardization of variant files and data analysis.

232.

Research article   Open Access

Traditional Cantonese diet and nasopharyngeal carcinoma risk: a large-scale case-control study in Guangdong, China

Wei-Hua Jia, Xiang-Yu Luo, Bing-Jian Feng, Hong-Lian Ruan, Jin-Xin Bei, Wen-Sheng Liu, Hai-De Qin, Qi-Sheng Feng, Li-Zhen Chen, Shugart Yao, Yi-Xin Zeng BMC Cancer 2010, 10:446 (20 August 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

233.

Review   Open Access

Automatic de-identification of textual documents in the electronic health record: a review of recent research

Stephane M Meystre, F Friedlin, Brett R South, Shuying Shen, Matthew H Samore BMC Medical Research Methodology 2010, 10:70 (2 August 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

234.

Research   Open Access

Quantification of myocardial perfusion using CMR with a radial data acquisition: comparison with a dual-bolus method

Tae Kim, Nathan A Pack, Liyong Chen, Edward VR DiBella Journal of Cardiovascular Magnetic Resonance 2010, 12:45 (23 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

235.

Research article   Open Access

VIPR: A probabilistic algorithm for analysis of microbial detection microarrays

Adam F Allred, Guang Wu, Tuya Wulan, Kael F Fischer, Michael R Holbrook, Robert B Tesh, David Wang BMC Bioinformatics 2010, 11:384 (20 July 2010)

Abstract | Full text | PDF | PubMed

236.

Research   Open Access Highly Accessed

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

C André Lévesque, Henk Brouwer, Liliana Cano, John P Hamilton, Carson Holt, Edgar Huitema, Sylvain Raffaele, Gregg P Robideau, Marco Thines, Joe Win, Marcelo M Zerillo, Gordon W Beakes, Jeffrey L Boore, Dana Busam, Bernard Dumas, Steve Ferriera, Susan I Fuerstenberg, Claire MM Gachon, Elodie Gaulin, Francine Govers, Laura Grenville-Briggs, Neil Horner, Jessica Hostetler, Rays HY Jiang, Justin Johnson, Theerapong Krajaejun, Haining Lin, Harold JG Meijer, Barry Moore, Paul Morris et al. Genome Biology 2010, 11:R73 (13 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The genome sequence of the plant pathogenic oomycete, Pythium ultimum and a comparison with the related potato blight pathogen genome reveals differences in pathogenicity.

237.

Research   Open Access

Neuronal nicotinic alpha7 receptors modulate early neutrophil infiltration to sites of skin inflammation

Lorise C Gahring, Amber V Osborne, Michelle Reed, Scott W Rogers Journal of Neuroinflammation 2010, 7:38 (12 July 2010)

Abstract | Full text | PDF | PubMed

238.

Research article   Open Access Highly Accessed

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

Allen Kovach, Jill L Wegrzyn, Genis Parra, Carson Holt, George E Bruening, Carol A Loopstra, James Hartigan, Mark Yandell, Charles H Langley, Ian Korf, David B Neale BMC Genomics 2010, 11:420 (7 July 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

239.

Methodology article   Open Access

Mobile element scanning (ME-Scan) by targeted high-throughput sequencing

David J Witherspoon, Jinchuan Xing, Yuhua Zhang, W Scott Watkins, Mark A Batzer, Lynn B Jorde BMC Genomics 2010, 11:410 (30 June 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

240.

Commentary   Open Access

The hidden diversity of ribosomal peptide natural products

Eric W Schmidt BMC Biology 2010, 8:83 (17 June 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Eric Schmidt discusses how a recent BMC Biology paper has contributed to our appreciation of the remarkable structural diversity of ribosomal peptide natural products made in bacteria, and their likely biological relevance.

241.

Research article   Open Access Highly Accessed

Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte

Dongfang Wang, Changqing Zhang, David J Hearn, Il-Ho Kang, Jayson A Punwani, Megan I Skaggs, Gary N Drews, Karen S Schumaker, Ramin Yadegari BMC Plant Biology 2010, 10:110 (16 June 2010)

Abstract | Full text | PDF | PubMed

242.

Research   Open Access

Targeting melanoma growth and viability reveals dualistic functionality of the phosphonothionate analogue of carba cyclic phosphatidic acid

Molly K Altman, Vashisht Gopal, Wei Jia, Shuangxing Yu, Hassan Hall, Gordon B Mills, A Cary McGinnis, Michael G Bartlett, Guowei Jiang, Damian Madan, Glenn D Prestwich, Yong Xu, Michael A Davies, Mandi M Murph Molecular Cancer 2010, 9:140 (9 June 2010)

Abstract | Full text | PDF | PubMed

243.

Editorial   Open Access

Filter Banks for Next Generation Multicarrier Wireless Communications

Markku Renfors, Pierre Siohan, Behrouz Farhang-Boroujeny, Faouzi Bader EURASIP Journal on Advances in Signal Processing 2010, 2010:314193 (31 May 2010)

Full text | PDF

244.

Short report   Open Access

Assessment of Epidermal Growth Factor Receptor (EGFR) expression in human meningioma

A Gabriella Wernicke, Adam P Dicker, Michal Whiton, Jana Ivanidze, Terry Hyslop, Elizabeth H Hammond, Arie Perry, David W Andrews, Lawrence Kenyon Radiation Oncology 2010, 5:46 (30 May 2010)

Abstract | Full text | PDF | PubMed

245.

Research   Open Access Highly Accessed

Minocycline inhibits glial proliferation in the H-Tx rat model of congenital hydrocephalus

James P McAllister, Janet M Miller Cerebrospinal Fluid Research 2010, 7:7 (27 May 2010)

Abstract | Full text | PDF | PubMed | 1 comment

246.

Methodology article   Open Access

A comparison of probe-level and probeset models for small-sample gene expression data

John R Stevens, Jason L Bell, Kenneth I Aston, Kenneth L White BMC Bioinformatics 2010, 11:281 (26 May 2010)

Abstract | Full text | PDF | PubMed

247.

Poster presentation   Open Access

Linking of Utah genealogies to outpatient colonoscopy records defines familial aggregation of colorectal polyps and cancer

Therese MF Tuohy, Richard Pimentel, Kerry Rowe, Randall Burt, Geraldine Mineau Hereditary Cancer in Clinical Practice 2010, 8(Suppl 1):P24 (25 May 2010)

Full text | PDF

248.

Poster presentation   Open Access

Differential gene expression in primary colonic tissue from control, FAP and AFAP patients reveals unique signatures with diagnostic potential

Deborah W Neklason, Brett A Milash, Therese M Tuohy, Jennifer Lilley, Randall W Burt Hereditary Cancer in Clinical Practice 2010, 8(Suppl 1):P13 (25 May 2010)

Full text | PDF

249.

Poster presentation   Open Access

Evolution of a High-Risk Cancer Registry: past, present and future

Michelle S Lewandowski, Thomas M Day, Joslin Christensen, Therese MF Tuohy, Wendy Kohlmann, Deborah W Neklason, Randall W Burt Hereditary Cancer in Clinical Practice 2010, 8(Suppl 1):P11 (25 May 2010)

Full text | PDF

250.

Oral presentation   Open Access

Effect of smoking on urothelial cancer risk in individuals with Lynch syndrome

Wendy Kohlmann, Lisa M Pappas, Kory Jasperson, Deborah W Neklason, Randall W Burt, Jeffrey N Weitzel, Elena M Stoffel Hereditary Cancer in Clinical Practice 2010, 8(Suppl 1):O6 (25 May 2010)

Full text | PDF

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