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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Utah

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1.

Research   Open Access

VarBin, a novel method for classifying true and false positive variants in NGS data

Jacob Durtschi, Rebecca L Margraf, Emily M Coonrod, Kalyan C Mallempati, Karl V Voelkerding BMC Bioinformatics 2013, 14(Suppl 13):S2 (1 October 2013)

Abstract | Full text | PDF

2.

Research article   Open Access

Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers

Adam L Cohen, Stephen R Piccolo, Luis Cheng, Rafaella Soldi, Bing Han, W Evan Johnson, Andrea H Bild BMC Medical Genomics 2013, 6:35 (30 September 2013)

Abstract | Provisional PDF | PubMed

3.

Research article   Open Access Highly Accessed

Whirlin, a cytoskeletal scaffolding protein, stabilizes the paranodal region and axonal cytoskeleton in myelinated axons

James A Green, Jun Yang, M’hamed Grati, Bechara Kachar, Manzoor A Bhat BMC Neuroscience 2013, 14:96 (6 September 2013)

Abstract | Full text | PDF | PubMed

4.

Commentary   Open Access

Challenges in implementing The Institute of Medicine systematic review standards

Stephanie M Chang, Eric B Bass, Nancy Berkman, Timothy S Carey, Robert L Kane, Joseph Lau, Sara Ratichek Systematic Reviews 2013, 2:69 (27 August 2013)

Abstract | Full text | PDF | PubMed

5.

Research   Open Access Highly Accessed

HIV latency and integration site placement in five cell-based models

Scott Sherrill-Mix, Mary K Lewinski, Marylinda Famiglietti, Alberto Bosque, Nirav Malani, Karen E Ocwieja, Charles C Berry, David Looney, Liang Shan, Luis M Agosto, Matthew J Pace, Robert F Siliciano, Una O’Doherty, John Guatelli, Vicente Planelles, Frederic D Bushman Retrovirology 2013, 10:90 (16 August 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access Highly Accessed

Histone deacetylases 1 and 2 maintain S-phase chromatin and DNA replication fork progression

Srividya Bhaskara, Vincent Jacques, James R Rusche, Eric N Olson, Bradley R Cairns, Mahesh B Chandrasekharan Epigenetics & Chromatin 2013, 6:27 (15 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Srividya Bhaskara et al. describe an important role of histone deacetylases 1 and 2 in regulating SMARCA5 to maintain genome stability and DNA replication fork progression.

7.

Research   Open Access

Phenotypic selection of a wild Saccharomyces cerevisiae strain for simultaneous saccharification and co-fermentation of AFEX™ pretreated corn stover

Mingjie Jin, Cory Sarks, Christa Gunawan, Benjamin D Bice, Shane P Simonett, Ragothaman Avanasi Narasimhan, Laura B Willis, Bruce E Dale, Venkatesh Balan, Trey K Sato Biotechnology for Biofuels 2013, 6:108 (27 July 2013)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access Highly Accessed

Microarray characterization of gene expression changes in blood during acute ethanol exposure

Doris M Kupfer, Vicky L White, David L Strayer, Dennis J Crouch, Dennis Burian BMC Medical Genomics 2013, 6:26 (25 July 2013)

Abstract | Full text | PDF | PubMed

9.

Research article   Open Access

Development of a screen to identify selective small molecules active against patient-derived metastatic and chemoresistant breast cancer cells

Keith M Gligorich, Rachel M Vaden, Dawne N Shelton, Guoying Wang, Cindy B Matsen, Ryan E Looper, Matthew S Sigman, Bryan E Welm Breast Cancer Research 2013, 15:R58 (23 July 2013)

Abstract | Provisional PDF | PubMed

10.

Research article   Open Access

Patient and provider attitudes toward genomic testing for prostate cancer susceptibility: a mixed method study

Wendy C Birmingham, Neeraj Agarwal, Wendy Kohlmann, Lisa G Aspinwall, Mary Wang, Jay Bishoff, Christopher Dechet, Anita Y Kinney BMC Health Services Research 2013, 13:279 (20 July 2013)

Abstract | Full text | PDF | PubMed

11.

Research   Open Access

A longitudinal study of CPAP therapy for patients with chronic cough and obstructive sleep apnoea

Krishna M Sundar, Sarah E Daly, Alika M Willis Cough 2013, 9:19 (11 July 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

In a single-center study, 68% of patients presenting with idiopathic chronic cough also had obstructive sleep apnea (OSA) and following continuous positive airway pressure therapy both OSA and chronic cough status improved, providing further evidence for a link between the two conditions.

12.

Original investigation   Open Access Highly Accessed

Effects of icosapent ethyl on lipid and inflammatory parameters in patients with diabetes mellitus-2, residual elevated triglycerides (200–500 mg/dL), and on statin therapy at LDL-C goal: the ANCHOR study

Eliot A Brinton, Christie M Ballantyne, Harold E Bays, John J Kastelein, Rene A Braeckman, Paresh N Soni Cardiovascular Diabetology 2013, 12:100 (9 July 2013)

Abstract | Full text | PDF | PubMed

13.

Poster presentation   Open Access

Influence of intrinsic and synaptic properties on transmission of spike timing precision

Heather A Brooks, Alla Borisyuk BMC Neuroscience 2013, 14(Suppl 1):P31 (8 July 2013)

Full text | PDF

14.

Research   Open Access

Development and validation of a predictive model of acute glucose response to exercise in individuals with type 2 diabetes

Bryan S Gibson, Sheri R Colberg, Paul Poirier, Denise Vancea, Jason Jones, Robin Marcus Diabetology & Metabolic Syndrome 2013, 5:33 (1 July 2013)

Abstract | Full text | PDF | PubMed

15.

Research   Open Access

Focused ultrasound-mediated drug delivery to pancreatic cancer in a mouse model

Natalya Rapoport, Allison Payne, Christopher Dillon, Jill Shea, Courtney Scaife, Roohi Gupta Journal of Therapeutic Ultrasound 2013, 1:11 (1 July 2013)

Abstract | Full text | PDF

16.

Letter   Free Highly Accessed

COMPLEXO: identifying the missing heritability of breast cancer via next generation collaboration

Melissa C Southey, Daniel J Park, Tu Nguyen-Dumont, Ian Campbell, Ella Thompson, Alison H Trainer, Georgia Chenevix-Trench, Jacques Simard, Martine Dumont, Penny Soucy, Mads Thomassen, Lars Jønson, Inge S Pedersen, Thomas VO Hansen, Heli Nevanlinna, Sofia Khan, Olga Sinilnikova, Sylvie Mazoyer, Fabienne Lesueur, Francesca Damiola, Rita Schmutzler, Alfons Meindl, Eric Hahnen, Michael R Dufault, TL Chris Chan, Ava Kwong, Rosa Barkardóttir, Paolo Radice, Paolo Peterlongo et al. Breast Cancer Research 2013, 15:402 (21 June 2013)

Abstract | Full text | PDF | PubMed

17.

Review   Open Access Highly Accessed

Intracavernous administration of bone marrow mononuclear cells: a new method of treating erectile dysfunction?

Thomas E Ichim, Timothy Warbington, Octav Cristea, Joseph L Chin, Amit N Patel Journal of Translational Medicine 2013, 11:139 (9 June 2013)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access

Evaluating the cognitive effects of donepezil 23 mg/d in moderate and severe Alzheimer’s disease: analysis of effects of baseline features on treatment response

Marwan Sabbagh, Jeffrey Cummings, Daniel Christensen, Rachelle Doody, Martin Farlow, Liang Liu, Joan Mackell, Randi Fain BMC Geriatrics 2013, 13:56 (6 June 2013)

Abstract | Full text | PDF | PubMed

19.

Research article   Open Access Highly Accessed

Phylogenetic analysis of symbionts in feather-feeding lice of the genus Columbicola: evidence for repeated symbiont replacements

Wendy A Smith, Kelly F Oakeson, Kevin P Johnson, David L Reed, Tamar Carter, Kari L Smith, Ryuichi Koga, Takema Fukatsu, Dale H Clayton, Colin Dale BMC Evolutionary Biology 2013, 13:109 (31 May 2013)

Abstract | Full text | PDF | PubMed

20.

Research article   Open Access

Tardive and spontaneous dyskinesia incidence in the general population

Ray M Merrill, Joseph L Lyon, Paul M Matiaco BMC Psychiatry 2013, 13:152 (28 May 2013)

Abstract | Full text | PDF | PubMed

21.

Methodology   Open Access

Interactions by 2D Gel Electrophoresis Overlap (iGEO): a novel high fidelity approach to identify constituents of protein complexes

Masaaki Yoshigi, Stephen M Pronovost, Julie L Kadrmas Proteome Science 2013, 11:21 (12 May 2013)

Abstract | Full text | PDF | PubMed

22.

Research article   Open Access

A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae

Wannes Dermauw, Edward Osborne, Richard M Clark, Miodrag Grbić, Luc Tirry, Thomas Van Leeuwen BMC Genomics 2013, 14:317 (10 May 2013)

Abstract | Full text | PDF | PubMed

23.

Research   Open Access Highly Accessed

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ray Ming, Robert VanBuren, Yanling Liu, Mei Yang, Yuepeng Han, Lei-Ting Li, Qiong Zhang, Min-Jeong Kim, Michael C Schatz, Michael Campbell, Jingping Li, John E Bowers, Haibao Tang, Eric Lyons, Ann A Ferguson, Giuseppe Narzisi, David R Nelson, Crysten E Blaby-Haas, Andrea R Gschwend, Yuannian Jiao, Joshua P Der, Fanchang Zeng, Jennifer Han, Xiang Min, Karen A Hudson, Ratnesh Singh, Aleel K Grennan, Steven J Karpowicz, Jennifer R Watling, Kikukatsu Ito et al. Genome Biology 2013, 14:R41 (10 May 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | f1000 |  Editor’s summary

The genome of the long-living, slowly evolving sacred lotus reveals the genetic mechanisms underlying its adaptation to limited nutrient availability

24.

Research   Open Access

Examining the challenges of family recruitment to behavioral intervention trials: factors associated with participation and enrollment in a multi-state colonoscopy intervention trial

Rebecca G Simmons, Yuan-Chin Amy Lee, Antoinette M Stroup, Sandra L Edwards, Amy Rogers, Christopher Johnson, Charles L Wiggins, Deirdre A Hill, Rosemary D Cress, Jan Lowery, Scott T Walters, Kory Jasperson, John C Higginbotham, Marc S Williams, Randall W Burt, Marc D Schwartz, Anita Y Kinney Trials 2013, 14:116 (30 April 2013)

Abstract | Full text | PDF | PubMed

25.

Research   Open Access

A new ratio for better predicting future death/myocardial infarction than standard lipid measurements in women >50 years undergoing coronary angiography: the apolipoprotein A1 remnant ratio (Apo A1/ [VLDL3+IDL])

Heidi T May, John R Nelson, Krishnaji R Kulkarni, Jeffrey L Anderson, Benjamin D Horne, Tami L Bair, Joseph B Muhlestein Lipids in Health and Disease 2013, 12:55 (26 April 2013)

Abstract | Full text | PDF | PubMed

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