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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, Davis

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76.

Poster presentation   Open Access

Dissecting the genetic architecture of coronary artery disease by genome engineering

David J Segal, Mital S Bhakta, Kumitaa Das, Chongxiu Sun, Natalie M Grace, Jan A Nolta, Anne A Knowlton, David M Rocke, Scott I Simon BMC Proceedings 2012, 6(Suppl 6):P34 (1 October 2012)

Full text | PDF

77.

Research article   Open Access Highly Accessed

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes

Danielle G Lemay, William F Martin, Angie S Hinrichs, Monique Rijnkels, J Bruce German, Ian Korf, Katherine S Pollard BMC Bioinformatics 2012, 13:253 (28 September 2012)

Abstract | Full text | PDF | PubMed

78.

Research   Open Access

Interferon regulatory factor 8/interferon consensus sequence binding protein is a critical transcription factor for the physiological phenotype of microglia

Makoto Horiuchi, Kouji Wakayama, Aki Itoh, Kumi Kawai, David Pleasure, Keiko Ozato, Takayuki Itoh Journal of Neuroinflammation 2012, 9:227 (28 September 2012)

Abstract | Full text | PDF | PubMed

79.

Review   Open Access Highly Accessed

Lessons on the relationship between livestock husbandry and biodiversity from the Kenya Long-term Exclosure Experiment (KLEE)

Corinna Riginos, Lauren M Porensky, Kari E Veblen, Wilfred O Odadi, Ryan L Sensenig, Duncan Kimuyu, Felicia Keesing, Marit L Wilkerson, Truman P Young Pastoralism: Research, Policy and Practice 2012, 2:10 (28 September 2012)

Abstract | Full text | PDF

80.

Research   Open Access

Constructing perfect phylogenies and proper triangulations for three-state characters

Rob Gysel, Fumei Lam, Dan Gusfield Algorithms for Molecular Biology 2012, 7:26 (24 September 2012)

Abstract | Full text | PDF | PubMed

81.

Research   Open Access Highly Accessed

Complete genome sequence of an astrovirus identified in a domestic rabbit (Oryctolagus cuniculus) with gastroenteritis

Mark D Stenglein, Eric Velazquez, Cheryl Greenacre, Rebecca P Wilkes, J Ruby, Julia S Lankton, Donald Ganem, Melissa A Kennedy, Joseph L DeRisi Virology Journal 2012, 9:216 (22 September 2012)

Abstract | Full text | PDF | PubMed

82.

Research article   Open Access

Bipartite and tripartite Cucumber mosaic virus-based vectors for producing the Acidothermus cellulolyticus endo-1,4-β-glucanase and other proteins in non-transgenic plants

Min Hwang, Benjamin E Lindenmuth, Karen A McDonald, Bryce W Falk BMC Biotechnology 2012, 12:66 (21 September 2012)

Abstract | Full text | PDF | PubMed

83.

Oral presentation   Open Access

A recombinant attenuated Mycobacterium tuberculosis-SIV combination vaccine is safe and immunogenic in immunocompromised, SIV-infected infant macaques

K Jensen, UD Ranganathan, P Kozlowski, K Van Rompay, D Canfield, R Ravindran, I Khan, P Luciw, G Fennelly, M Larsen, K Abel Retrovirology 2012, 9(Suppl 2):O4 (13 September 2012)

Full text | PDF

84.

Research article   Open Access Highly Accessed

RNA-Seq reveals complex genetic response to deepwater horizon oil release in Fundulus grandis

Tzintzuni I Garcia, Yingjia Shen, Douglas Crawford, Marjorie F Oleksiak, Andrew Whitehead, Ronald B Walter BMC Genomics 2012, 13:474 (12 September 2012)

Abstract | Full text | PDF | PubMed

85.

Research   Open Access

The efficacy of ultrasound treatment as a reversible male contraceptive in the rhesus monkey

Catherine A VandeVoort, Theodore L Tollner Reproductive Biology and Endocrinology 2012, 10:81 (12 September 2012)

Abstract | Full text | PDF | PubMed

86.

Research article   Open Access

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut

Ervin D Nagy, Yufang Guo, Shunxue Tang, John E Bowers, Rebecca A Okashah, Christopher A Taylor, Dong Zhang, Sameer Khanal, Adam F Heesacker, Nelly Khalilian, Andrew D Farmer, Noelia Carrasquilla-Garcia, R Varma Penmetsa, Douglas Cook, H Thomas Stalker, Niels Nielsen, Peggy Ozias-Akins, Steven J Knapp BMC Genomics 2012, 13:469 (11 September 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

87.

Opinion   Subscription Highly Accessed

The tomato genome: implications for plant breeding, genomics and evolution

Aashish Ranjan, Yasunori Ichihashi, Neelima R Sinha Genome Biology 2012, 13:167 (30 August 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The importance of the tomato genome for plant breeding and the future of crop research

88.

Research article   Open Access Highly Accessed

Different associations of white matter lesions with depression and cognition

Jun-Young Lee, Philip Insel, R Mackin, Norbert Schuff, Helena Chui, Charles DeCarli, Kee Park, Susanne G Mueller, Michael W Weiner BMC Neurology 2012, 12:83 (25 August 2012)

Abstract | Full text | PDF | PubMed

89.

Research   Open Access

Stimulation with a class A CpG oligonucleotide enhances resistance to infection with feline viruses from five different families

Céline Robert-Tissot, Vera L Rüegger, Valentino Cattori, Marina L Meli, Barbara Riond, Peter F Moore, Monika Engels, Marco Franchini, Regina Hofmann-Lehmann, Hans Lutz Veterinary Research 2012, 43:60 (20 August 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

90.

Research article   Open Access

Goat milk with and without increased concentrations of lysozyme improves repair of intestinal cell damage induced by enteroaggregative Escherichia coli

Eunice B Carvalho, Elizabeth A Maga, Josiane S Quetz, Ila FN Lima, Hemerson YF Magalhães, Felipe AR Rodrigues, Antônio VA Silva, Mara MG Prata, Paloma A Cavalcante, Alexandre Havt, Marcelo Bertolini, Luciana R Bertolini, Aldo AM Lima BMC Gastroenterology 2012, 12:106 (11 August 2012)

Abstract | Full text | PDF | PubMed

91.

Research   Open Access Highly Accessed

Comparative host protein interactions with HTLV-1 p30 and HTLV-2 p28: insights into difference in pathobiology of human retroviruses

Rami Doueiri, Rajaneesh Anupam, Mamuka Kvaratskhelia, Kari B Green, Michael D Lairmore, Patrick L Green Retrovirology 2012, 9:64 (9 August 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Affinity-tag purification coupled with mass spectrometric (MS) analyses revealed 42 and 22 potential interacting cellular partners of p30 and p28, respectively. Of these, only three cellular proteins, Protein arginine methyltransferase 5 (PRMT5), hnRNP K and 60S ribosomal protein L8 were detected in both p30 and p28 fractions.

92.

Technical Note   Open Access

A reproducible, high throughput method for fabricating fibrin gels

Kaitlin C Murphy, J Leach BMC Research Notes 2012, 5:423 (8 August 2012)

Abstract | Full text | PDF | PubMed

93.

Research article   Open Access Highly Accessed

Medical students’ attitudes toward gay men

Kabir Matharu, Richard L Kravitz, Graham T McMahon, Machelle D Wilson, Faith T Fitzgerald BMC Medical Education 2012, 12:71 (8 August 2012)

Abstract | Full text | PDF | PubMed

94.

Research article   Open Access

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms

Frank M You, Karin R Deal, Jirui Wang, Monica T Britton, Joseph N Fass, Dawei Lin, Abhaya M Dandekar, Charles A Leslie, Mallikarjuna Aradhya, Ming-Cheng Luo, Jan Dvorak BMC Genomics 2012, 13:354 (31 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

95.

Research article   Open Access

Comparative molecular analyses of Borrelia burgdorferi sensu stricto strains B31 and N40D10/E9 and determination of their pathogenicity

Kamfai Chan, Mehwish Awan, Stephen W Barthold, Nikhat Parveen BMC Microbiology 2012, 12:157 (30 July 2012)

Abstract | Full text | PDF | PubMed

96.

Research article   Open Access

Evidence of an increased pathogenic footprint in the lingual microbiome of untreated HIV infected patients

Angeline T Dang, Sean Cotton, Sumathi Sankaran-Walters, Chin-Shang Li, Chia-Yuan Lee, Satya Dandekar, Bruce J Paster, Michael D George BMC Microbiology 2012, 12:153 (28 July 2012)

Abstract | Full text | PDF | PubMed

97.

Research article   Open Access

Genetic structure and mating system of wild cowpea populations in West Africa

Eric B Kouam, Remy S Pasquet, Pascal Campagne, Jean-Baptiste Tignegre, Kevin Thoen, Remi Gaudin, Jeremy T Ouedraogo, Abdulai B Salifu, Geoffrey M Muluvi, Paul Gepts BMC Plant Biology 2012, 12:113 (24 July 2012)

Abstract | Full text | PDF | PubMed

98.

Research   Open Access Highly Accessed

Consumption of fructose- but not glucose-sweetened beverages for 10 weeks increases circulating concentrations of uric acid, retinol binding protein-4, and gamma-glutamyl transferase activity in overweight/obese humans

Chad L Cox, Kimber L Stanhope, Jean Schwarz, James L Graham, Bonnie Hatcher, Steven C Griffen, Andrew A Bremer, Lars Berglund, John P McGahan, Nancy L Keim, Peter J Havel Nutrition & Metabolism 2012, 9:68 (24 July 2012)

Abstract | Full text | PDF | PubMed

99.

Research article   Open Access

Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue – a GC-TOFMS based metabolomics study

Jan Budczies, Carsten Denkert, Berit M Müller, Scarlet F Brockmöller, Frederick Klauschen, Balazs Györffy, Manfred Dietel, Christiane Richter-Ehrenstein, Ulrike Marten, Reza M Salek, Julian L Griffin, Mika Hilvo, Matej Orešič, Gert Wohlgemuth, Oliver Fiehn BMC Genomics 2012, 13:334 (23 July 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

100.

Research   Open Access

The Rice Oligonucleotide Array Database: an atlas of rice gene expression

Peijian Cao, Ki-Hong Jung, Daeseok Choi, Daehee Hwang, Jun Zhu, Pamela C Ronald Rice 2012, 5:17 (19 July 2012)

Abstract | Full text | PDF

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