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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, Davis

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326.

Minireview   Free

Mapping the protistan 'rare biosphere'

Scott C Dawson, Kari D Hagen Journal of Biology 2009, 8:105 (29 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Dawson and Hagen discuss our current underestimation of the ecological complexity of protist communities in the light of a recent paper in BMC Biology that reports an expanded map of microbial diversity using high throughput sequencing strategy.

327.

Research article   Open Access

One nutritional symbiosis begat another: Phylogenetic evidence that the ant tribe Camponotini acquired Blochmannia by tending sap-feeding insects

Jennifer J Wernegreen, Seth N Kauppinen, Seán G Brady, Philip S Ward BMC Evolutionary Biology 2009, 9:292 (16 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

328.

Research article   Open Access

Linking mechanistic and behavioral responses to sublethal esfenvalerate exposure in the endangered delta smelt; Hypomesus transpacificus (Fam. Osmeridae)

Richard E Connon, Juergen Geist, Janice Pfeiff, Alexander V Loguinov, Leandro S D'Abronzo, Henri Wintz, Christopher D Vulpe, Inge Werner BMC Genomics 2009, 10:608 (15 December 2009)

Abstract | Full text | PDF | PubMed

329.

Proceedings   Open Access

Data for Genetic Analysis Workshop 16 Problem 1, association analysis of rheumatoid arthritis data

Christopher I Amos, Wei Chen, Michael F Seldin, Elaine F Remmers, Kimberly E Taylor, Lindsey A Criswell, Annette T Lee, Robert M Plenge, Daniel L Kastner, Peter K Gregersen BMC Proceedings 2009, 3(Suppl 7):S2 (15 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

330.

Correction   Open Access

Correction: Recent advances in biomedical applications of accelerator mass spectrometry

Sang Hah, Paul T Henderson, Kenneth W Turteltaub Journal of Biomedical Science 2009, 16:111 (9 December 2009)

Abstract | Full text | PDF | PubMed

331.

Research article   Open Access Highly Accessed

A fruit quality gene map of Prunus

Ebenezer A Ogundiwin, Cameron P Peace, Thomas M Gradziel, Dan E Parfitt, Fredrick A Bliss, Carlos H Crisosto BMC Genomics 2009, 10:587 (8 December 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Candidate genes for peach fruit texture, flavor, pigmentation and chilling injury resistance have been anchored to a linkage map by bin-mapping to give a snapshot of the location of over 100 potentially useful loci for selective breeding.

332.

Methodology   Open Access

Usefulness of commercially available GPS data-loggers for tracking human movement and exposure to dengue virus

Gonzalo M Vazquez-Prokopec, Steven T Stoddard, Valerie Paz-Soldan, Amy C Morrison, John P Elder, Tadeusz J Kochel, Thomas W Scott, Uriel Kitron International Journal of Health Geographics 2009, 8:68 (30 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

333.

Research article   Open Access

A unified approach to molecular epidemiology investigations: tools and patterns in California as a case study for endemic shigellosis

Sawsan Al-Nimri, Woutrina A Miller, Barbara A Byrne, Gerry Guibert, Lily Chen BMC Infectious Diseases 2009, 9:184 (24 November 2009)

Abstract | Full text | PDF | PubMed

334.

Research   Open Access

Characterisation of the proximal airway squamous metaplasia induced by chronic tobacco smoke exposure in spontaneously hypertensive rats

Sarah J Bolton, Kate Pinnion, Victor Oreffo, Martyn Foster, Kent E Pinkerton Respiratory Research 2009, 10:118 (24 November 2009)

Abstract | Full text | PDF | PubMed

335.

Research article   Open Access Highly Accessed

Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1

Ivan Simko, Dov A Pechenick, Leah K McHale, María Truco, Oswaldo E Ochoa, Richard W Michelmore, Brian E Scheffler BMC Plant Biology 2009, 9:135 (23 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Tvr1, a gene that confers resistance to the disease dieback in iceberg lettuces, has a closely linked EST marker with SNP polymorphisms that define 3 resistant and 1 susceptible haplotype, paving the way for developing other resistant cultivars.

336.

Short Report   Open Access

Puma predation on radiocollared and uncollared bighorn sheep

Sean M Clemenza, Esther S Rubin, Christine K Johnson, Randall A Botta, Walter M Boyce BMC Research Notes 2009, 2:230 (18 November 2009)

Abstract | Full text | PDF | PubMed

337.

Research article   Open Access Highly Accessed

Software platform virtualization in chemistry research and university teaching

Tobias Kind, Tim Leamy, Julie A Leary, Oliver Fiehn Journal of Cheminformatics 2009, 1:18 (16 November 2009)

Abstract | Full text | PDF | PubMed

338.

Commentary   Free

The value of a risk model for early-onset candidemia

Christian Sandrock, Javeed Siddiqui Critical Care 2009, 13:1005 (16 November 2009)

Abstract | Full text | PDF | PubMed

339.

Research   Open Access

Clinical-dosimetric analysis of measures of dysphagia including gastrostomy-tube dependence among head and neck cancer patients treated definitively by intensity-modulated radiotherapy with concurrent chemotherapy

Baoqing Li, Dan Li, Derick H Lau, D Gregory Farwell, Quang Luu, David M Rocke, Kathleen Newman, Jean Courquin, James A Purdy, Allen M Chen Radiation Oncology 2009, 4:52 (12 November 2009)

Abstract | Full text | PDF | PubMed

340.

Case report   Open Access

Recovery of methamphetamine associated cardiomyopathy predicted by late gadolinium enhanced cardiovascular magnetic resonance

Javier E Lopez, Khung Yeo, Gary Caputo, Michael Buonocore, Saul Schaefer Journal of Cardiovascular Magnetic Resonance 2009, 11:46 (11 November 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

341.

Research article   Open Access Highly Accessed

Impacts of feral horses on a desert environment

Stacey D Ostermann-Kelm, Edward A Atwill, Esther S Rubin, Larry E Hendrickson, Walter M Boyce BMC Ecology 2009, 9:22 (10 November 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The formation of multiple trails by free-ranging horses in a Californian desert reduces vegetation cover and compacts soils, but, together with horse feces, increases native plant diversity.

342.

Research article   Open Access Highly Accessed

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

Yong Q Gu, Yaqin Ma, Naxin Huo, John P Vogel, Frank M You, Gerard R Lazo, William M Nelson, Carol Soderlund, Jan Dvorak, Olin D Anderson, Ming-Cheng Luo BMC Genomics 2009, 10:496 (27 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

343.

Methodology article   Open Access

Direct calibration of PICKY-designed microarrays

Hui-Hsien Chou, Arunee Trisiriroj, Sunyoung Park, Yue-Ie C Hsing, Pamela C Ronald, Patrick S Schnable BMC Bioinformatics 2009, 10:347 (23 October 2009)

Abstract | Full text | PDF | PubMed

344.

Research article   Open Access

Does evolutionary innovation in pharyngeal jaws lead to rapid lineage diversification in labrid fishes?

Michael E Alfaro, Chad D Brock, Barbara L Banbury, Peter C Wainwright BMC Evolutionary Biology 2009, 9:255 (22 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

345.

Poster presentation   Open Access

P20-13. Identification and characterization of early founder populations in Rhesus macaques vaginally infected with SIVmac251

M Stone, BF Keele, Z Ma, E Bailes, J Dutra, BH Hahn, GM Shaw, CJ Miller Retrovirology 2009, 6(Suppl 3):P383 (22 October 2009)

Full text | PDF

346.

Research article   Open Access Highly Accessed

Sampling nucleotide diversity in cotton

Allen Van Deynze, Kevin Stoffel, Mike Lee, Thea A Wilkins, Alexander Kozik, Roy G Cantrell, John Z Yu, Russel J Kohel, David M Stelly BMC Plant Biology 2009, 9:125 (20 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Nucleotide marker diversity is characterised for 270 single-copy polymorphic loci in cotton, which will be useful for manipulation and transfer of novel alleles in breeding programs to improve desirable agronomic and quality traits.

347.

Software   Open Access

ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

Frank M You, Naxin Huo, Yong Q Gu, Gerard R Lazo, Jan Dvorak, Olin D Anderson BMC Bioinformatics 2009, 10:331 (13 October 2009)

Abstract | Full text | PDF | PubMed

348.

Research article   Open Access

A first generation BAC-based physical map of the rainbow trout genome

Yniv Palti, Ming-Cheng Luo, Yuqin Hu, Carine Genet, Frank M You, Roger L Vallejo, Gary H Thorgaard, Paul A Wheeler, Caird E Rexroad BMC Genomics 2009, 10:462 (8 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

349.

Research article   Open Access Highly Accessed

Giardia duodenalis in feedlot cattle from the central and western United States

Bruce R Hoar, Robert R Paul, Jennifer Siembieda, Maria Pereira, Edward R Atwill BMC Veterinary Research 2009, 5:37 (2 October 2009)

Abstract | Full text | PDF | PubMed

350.

Correspondence   Open Access

Bridging the gap between systems biology and medicine

Gilles Clermont, Charles Auffray, Yves Moreau, David M Rocke, Daniel Dalevi, Devdatt Dubhashi, Dana R Marshall, Peter Raasch, Frank Dehne, Paolo Provero, Jesper Tegner, Bruce J Aronow, Michael A Langston, Mikael Benson Genome Medicine 2009, 1:88 (29 September 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The translation of data generated by systems biology approaches into the clinic generates a series of unique questions and challenges, and should be driven by the collaboration of clinical, experimental, and computational scientists.

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