1.
Trip12, a HECT domain E3 ubiquitin ligase, targets Sox6 for proteasomal degradation and affects fiber type-specific gene expression in muscle cells
Chung-Il
An,
Edward
Ganio,
Nobuko
Hagiwara
Skeletal Muscle 2013, 3 :11 (10 May 2013)
Abstract | Provisional PDF
| PubMed
2.
Testosterone-derived estradiol production by male endothelium is robust and dependent on p450 aromatase via estrogen receptor alpha
Amparo
C
Villablanca,
Sarada
Tetali,
Robin
Altman,
Kenneth
F
Ng,
John
C
Rutledge
SpringerPlus 2013, 2 :214 (9 May 2013)
Abstract | Provisional PDF
3.
Single nucleotide polymorphisms in CETP , SLC46A1 , SLC19A1 , CD36 , BCMO1 , APOA5 , and ABCA1 are significant predictors of plasma HDL in healthy adults
Andrew
J
Clifford,
Gonzalo
Rincon,
Janel
E
Owens,
Juan
F
Medrano,
Alanna
J
Moshfegh,
David
J
Baer,
Janet
A
Novotny
Lipids in Health and Disease 2013, 12 :66 (8 May 2013)
Abstract | Full text | PDF | PubMed
4.
Influence of arthritis-related protein (BBF01) on infectivity of Borrelia burgdorferi B31
Denise
Imai,
Kevin
Holden,
Eric
M
Velazquez,
Sunlian
Feng,
Emir
Hodzic,
Stephen
W
Barthold
BMC Microbiology 2013, 13 :100 (7 May 2013)
Abstract | Provisional PDF
| PubMed
5.
Sex differences matter in the gut: effect on mucosal immune activation and inflammation
Sumathi
Sankaran-Walters,
Monica
Macal,
Irina
Grishina,
Lauren
Nagy,
Larissa
Goulart,
Kathryn
Coolidge,
Jay
Li,
Anne
Fenton,
Theodore
Williams,
Mary
K
Miller,
Jason
Flamm,
Thomas
Prindiville,
Michael
George,
Satya
Dandekar
Biology of Sex Differences 2013, 4 :10 (7 May 2013)
Abstract | Full text | PDF | PubMed
6.
Tracking animals in freshwater with electronic tags: past, present and future
Steven
J
Cooke,
Jonathan
D
Midwood,
Jason
D
Thiem,
Peter
Klimley,
Martyn
C
Lucas,
Eva
B
Thorstad,
John
Eiler,
Chris
Holbrook,
Brendan
C
Ebner
Animal Biotelemetry 2013, 1 :5 (1 May 2013)
Abstract | Full text | PDF
7.
Evo-devo of human adolescence: beyond disease models of early puberty
Ze'ev
Hochberg,
Jay
Belsky
BMC Medicine 2013, 11 :113 (29 April 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Ze’ev Hochberg and Jay Belsky review the development of human adolescents from an endocrinological and social perspective, arguing that understanding the environmental impact on development will help inform further research.
8.
Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors
Dario
Cantu,
Vanesa
Segovia,
Daniel
MacLean,
Rosemary
Bayles,
Xianming
Chen,
Sophien
Kamoun,
Jorge
Dubcovsky,
Diane GO
Saunders,
Cristobal
Uauy
BMC Genomics 2013, 14 :270 (22 April 2013)
Abstract | Full text | PDF | PubMed
9.
Notch4 is required for tumor onset and perfusion
Maria José
Costa,
Xiaoqing
Wu,
Henar
Cuervo,
Ruchika
Srinivasan,
Seth
K
Bechis,
Ellen
Cheang,
Olivera
Marjanovic,
Thomas
Gridley,
Christin
A
Cvetic,
Rong
A
Wang
Vascular Cell 2013, 5 :7 (20 April 2013)
Abstract | Full text | PDF | PubMed
10.
Targeted versus tailored multimedia patient engagement to enhance depression recognition and treatment in primary care: randomized controlled trial protocol for the AMEP2 study
Daniel
J
Tancredi,
Christina
K
Slee,
Anthony
Jerant,
Peter
Franks,
Jasmine
Nettiksimmons,
Camille
Cipri,
Dustin
Gottfeld,
Julia
Huerta,
Mitchell
D
Feldman,
Maja
Jackson-Triche,
Steven
Kelly-Reif,
Andrew
Hudnut,
Sarah
Olson,
Janie
Shelton,
Richard
L
Kravitz
BMC Health Services Research 2013, 13 :141 (17 April 2013)
Abstract | Full text | PDF | PubMed
11.
No improvement in socioeconomic inequalities in birthweight and preterm birth over four decades: a population-based cohort study
Svetlana
V
Glinianaia,
Rakesh
Ghosh,
Judith
Rankin,
Mark
S
Pearce,
Louise
Parker,
Tanja
Pless-Mulloli
BMC Public Health 2013, 13 :345 (15 April 2013)
Abstract | Full text | PDF | PubMed
12.
Reevaluation of the evolutionary events within recA/RAD51 phylogeny
Sree
V
Chintapalli,
Gaurav
Bhardwaj,
Jagadish
Babu,
Loukia
Hadjiyianni,
Yoojin
Hong,
George
K
Todd,
Casey
A
Boosalis,
Zhenhai
Zhang,
Xiaofan
Zhou,
Hong
Ma,
Andriy
Anishkin,
Damian
B
van Rossum,
Randen
L
Patterson
BMC Genomics 2013, 14 :240 (10 April 2013)
Abstract | Full text | PDF | PubMed
13.
Values and options in cancer care (VOICE): study design and rationale for a patient-centered communication and decision-making intervention for physicians, patients with advanced cancer, and their caregivers
Michael
Hoerger,
Ronald
M
Epstein,
Paul
C
Winters,
Kevin
Fiscella,
Paul
R
Duberstein,
Robert
Gramling,
Phyllis
N
Butow,
Supriya
G
Mohile,
Paul
R
Kaesberg,
Wan
Tang,
Sandy
Plumb,
Adam
Walczak,
Anthony
L
Back,
Daniel
Tancredi,
Alison
Venuti,
Camille
Cipri,
Gisela
Escalera,
Carol
Ferro,
Don
Gaudion,
Beth
Hoh,
Blair
Leatherwood,
Linda
Lewis,
Mark
Robinson,
Peter
Sullivan,
Richard
L
Kravitz
BMC Cancer 2013, 13 :188 (9 April 2013)
Abstract | Full text | PDF | PubMed
14.
Endogenous mammalian histone H3.3 exhibits chromatin-related functions during development
Kelly
M
Bush,
Benjamin
TK
Yuen,
Bonnie
L
Barrilleaux,
John
W
Riggs,
Henriette
O’Geen,
Rebecca
F
Cotterman,
Paul
S
Knoepfler
Epigenetics & Chromatin 2013, 6 :7 (9 April 2013)
Abstract | Full text | PDF | PubMed
15.
Comparison of antioxidant activity and flavanol content of cacao beans processed by modern and traditional Mesoamerican methods
Elizabeth
Chin,
Kenneth
B
Miller,
Mark
J
Payne,
W Jeffery
Hurst,
David
A
Stuart
Heritage Science 2013, 1 :9 (5 April 2013)
Abstract | Full text | PDF
16.
Generation of a luciferase-based reporter for CHH and CG DNA methylation in
Arabidopsis thaliana
Thanh Theresa
Dinh,
Michael
O’Leary,
So Youn
Won,
Shengben
Li,
Lorena
Arroyo,
Xigang
Liu,
Andrew
Defries,
Binglian
Zheng,
Sean
R
Cutler,
Xuemei
Chen
Silence 2013, 4 :1 (5 April 2013)
Abstract | Full text | PDF | PubMed
17.
Why publish Animal Biotelemetry?
A Peter
Klimley
Animal Biotelemetry 2013, 1 :1 (4 April 2013)
Abstract | Full text | PDF
|
Editor’s summary
In this introductory editorial from the Editor-in-Chief, Pete Klimley, the aims and purpose of Animal Biotelemetry are discussed in the context along with a brief account of telemetry research and recent advances in this field.
18.
RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
Michael
J
Cipriano,
Pavel
N
Novichkov,
Alexey
E
Kazakov,
Dmitry
A
Rodionov,
Adam
P
Arkin,
Mikhail
S
Gelfand,
Inna
Dubchak
BMC Genomics 2013, 14 :213 (2 April 2013)
Abstract | Full text | PDF | PubMed
19.
High-reproducibility, flexible conductive patterns fabricated with silver nanowire by drop or fit-to-flow method
Yu
Tao,
Yuxiao
Tao,
Liuyang
Wang,
Biaobing
Wang,
Zhenguo
Yang,
Yanlong
Tai
Nanoscale Research Letters 2013, 8 :147 (29 March 2013)
Abstract | Full text | PDF | PubMed
20.
Enhancing the scoping study methodology: a large, inter-professional team’s experience with Arksey and O’Malley’s framework
Helena ML
Daudt,
Catherine
van Mossel,
Samantha
J
Scott
BMC Medical Research Methodology 2013, 13 :48 (23 March 2013)
Abstract | Full text | PDF | PubMed
21.
Attentional bias for trauma-related words: exaggerated emotional Stroop effect in Afghanistan and Iraq war veterans with PTSD
Victoria
Ashley,
Nikki
Honzel,
Jary
Larsen,
Timothy
Justus,
Diane
Swick
BMC Psychiatry 2013, 13 :86 (14 March 2013)
Abstract | Full text | PDF | PubMed
22.
Antitumor effects of L-BLP25 Antigen-Specific tumor immunotherapy in a novel human MUC1 transgenic lung cancer mouse model
Gregory
T
Wurz,
Audrey
M
Gutierrez,
Brittany
E
Greenberg,
Daniel
P
Vang,
Stephen
M
Griffey,
Chiao-Jung
Kao,
Michael
Wolf,
Michael
W
DeGregorio
Journal of Translational Medicine 2013, 11 :64 (13 March 2013)
Abstract | Full text | PDF | PubMed
23.
Comparative analysis of protein-protein interactions in the defense response of rice and wheat
Dario
Cantu,
Baoju
Yang,
Randy
Ruan,
Kun
Li,
Virginia
Menzo,
Daolin
Fu,
Mawsheng
Chern,
Pamela
C
Ronald,
Jorge
Dubcovsky
BMC Genomics 2013, 14 :166 (12 March 2013)
Abstract | Full text | PDF | PubMed
24.
Abundance, behavior and entomological inoculation rates of anthropophilic anophelines from a primary Colombian malaria endemic area
Nelson
Naranjo-Diaz,
Doris
A
Rosero,
Guillermo
Rua-Uribe,
Shirley
Luckhart,
Margarita
M
Correa
Parasites & Vectors 2013, 6 :61 (7 March 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Entomological and transmission parameters were evaluated to incriminate potential anopheline vectors in three localities of a major Colombian malaria endemic region. The results indicated that Anopheles nuneztovari and Anopheles darlingi continue to be the most important malaria vectors in this region. This is the first report of Anopheles triannulatus, natural infection in Colombia. Image: Collection site, El Loro locality, in the UCS malaria endemic region.
25.
Deletions in the pyruvate pathway of Salmonella Typhimurium alter SPI1-mediated gene expression and infectivity
Jason
Abernathy,
Carolina
Corkill,
Carolee
Hinojosa,
Xianyao
Li,
Huaijun
Zhou
Journal of Animal Science and Biotechnology 2013, 4 :5 (25 February 2013)
Abstract | Full text | PDF | PubMed
26.
Some inequalities for the minimum eigenvalue of the Hadamard product of an M -matrix and its inverse
Guanghui
Cheng,
Qin
Tan,
Zhuande
Wang
Journal of Inequalities and Applications 2013, 2013 :65 (21 February 2013)
Abstract | Full text | PDF
27.
Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species
Yeting
Zhang,
Monica
Fernandez-Aparicio,
Eric
K
Wafula,
Malay
Das,
Yuannian
Jiao,
Norman
J
Wickett,
Loren
A
Honaas,
Paula
E
Ralph,
Martin
F
Wojciechowski,
Michael
P
Timko,
John
I
Yoder,
James
H
Westwood,
Claude
W
dePamphilis
BMC Evolutionary Biology 2013, 13 :48 (20 February 2013)
Abstract | Full text | PDF | PubMed
28.
Allometry indicates giant eyes of giant squid are not exceptional
Lars
Schmitz,
Ryosuke
Motani,
Christopher
E
Oufiero,
Christopher
H
Martin,
Matthew
D
McGee,
Ashlee
R
Gamarra,
Johanna
J
Lee,
Peter
C
Wainwright
BMC Evolutionary Biology 2013, 13 :45 (18 February 2013)
Abstract | Full text | PDF | PubMed
29.
The differentially regulated genes TvQR1 and TvPirin of the parasitic plant Triphysaria exhibit distinctive natural allelic diversity
Quy
A
Ngo,
Huguette
Albrecht,
Takashi
Tsuchimatsu,
Ueli
Grossniklaus
BMC Plant Biology 2013, 13 :28 (18 February 2013)
Abstract | Full text | PDF | PubMed
30.
A double-blind, randomized, multicenter phase 2 study of prasugrel versus placebo in adult patients with sickle cell disease
Ted
Wun,
Denis
Soulieres,
Andrew
L
Frelinger,
Lakshmanan
Krishnamurti,
Enrico
M
Novelli,
Abdullah
Kutlar,
Kenneth
I
Ataga,
Charles
L
Knupp,
Lillian
E
McMahon,
John
J
Strouse,
Chunmei
Zhou,
Lori
E
Heath,
Chuke
E
Nwachuku,
Joseph
A
Jakubowski,
Jeffrey
S
Riesmeyer,
Kenneth
J
Winters
Journal of Hematology & Oncology 2013, 6 :17 (17 February 2013)
Abstract | Full text | PDF | PubMed
31.
A novel bocavirus in canine liver
Linlin
Li,
Patricia
A
Pesavento,
Christian
M
Leutenegger,
Marko
Estrada,
Lark
L
Coffey,
Samia
N
Naccache,
Erik
Samayoa,
Charles
Chiu,
Jianming
Qiu,
Chunlin
Wang,
Xutao
Deng,
Eric
Delwart
Virology Journal 2013, 10 :54 (13 February 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A new species of bocavirus has been identified in the liver of a dog with haemorrhagic gastoenteritis and is highly genetically distinct from the two known canine bocaviruses.
32.
The regulatory function of social referencing in preschoolers with Down syndrome or Williams syndrome
Angela John
Thurman,
Carolyn
B
Mervis
Journal of Neurodevelopmental Disorders 2013, 5 :2 (13 February 2013)
Abstract | Full text | PDF | PubMed
33.
Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence
Chris
M
Rands,
Aaron
Darling,
Matthew
Fujita,
Lesheng
Kong,
Matthew
T
Webster,
Céline
Clabaut,
Richard
D
Emes,
Andreas
Heger,
Stephen
Meader,
Michael Brent
Hawkins,
Michael
B
Eisen,
Clotilde
Teiling,
Jason
Affourtit,
Benjamin
Boese,
Peter
R
Grant,
Barbara Rosemary
Grant,
Jonathan
A
Eisen,
Arhat
Abzhanov,
Chris
P
Ponting
BMC Genomics 2013, 14 :95 (12 February 2013)
Abstract | Full text | PDF | PubMed | F1000 Biology
|
Editor’s summary
204 years after Charles Darwin’s birth, sequencing of the genome of the Darwin’s Finch Geospiza magnirostris reveals over 13,000 predicted genes, of which two under positive selection may have contributed to beak morphology evolution, which so interested Darwin.
34.
Using infrared eye-tracking to explore ordinal numerical processing in toddlers with Fragile X Syndrome
Emily
R
Owen,
Heidi
A
Baumgartner,
Susan
M
Rivera
Journal of Neurodevelopmental Disorders 2013, 5 :1 (12 February 2013)
Abstract | Full text | PDF | PubMed
35.
Predicting non-isometric fatigue induced by electrical stimulation pulse trains as a function of pulse duration
M Susan
Marion,
Anthony
S
Wexler,
Maury
L
Hull
Journal of NeuroEngineering and Rehabilitation 2013, 10 :13 (2 February 2013)
Abstract | Full text | PDF | PubMed
36.
Assessing community-based conservation projects: A systematic review and multilevel analysis of attitudinal, behavioral, ecological, and economic outcomes
Jeremy
Brooks,
Kerry
Waylen,
Monique
Mulder
Environmental Evidence 2013, 2 :2 (31 January 2013)
Abstract | Full text | PDF
37.
The passionate life of Simon Chan
Luca
Comai
Genome Biology 2013, 14 :103 (30 January 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Luca Comai remembers the late Simon Chan, whose work on centromere evolution features in the current issue of Genome Biology
38.
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
Daniël
P
Melters,
Keith
R
Bradnam,
Hugh
A
Young,
Natalie
Telis,
Michael
R
May,
J
Ruby,
Robert
Sebra,
Paul
Peluso,
John
Eid,
David
Rank,
José
Garcia,
Joseph
L
DeRisi,
Timothy
Smith,
Christian
Tobias,
Jeffrey
Ross-Ibarra,
Ian
Korf,
Simon
WL
Chan
Genome Biology 2013, 14 :R10 (30 January 2013)
Abstract | Provisional PDF
| PubMed | F1000 Biology
|
Editor’s summary
An analysis of centromere tandem repeats in 282 species reveals similar modes of evolution despite the lack of sequence conservation
39.
MeCP2 modulates gene expression pathways in astrocytes
Dag
H
Yasui,
Huichun
Xu,
Keith
W
Dunaway,
Janine
M
LaSalle,
Lee-Way
Jin,
Izumi
Maezawa
Molecular Autism 2013, 4 :3 (25 January 2013)
Abstract | Full text | PDF | PubMed
40.
Evidence of reactive oxygen species-mediated damage to mitochondrial DNA in children with typical autism
Eleonora
Napoli,
Sarah
Wong,
Cecilia
Giulivi
Molecular Autism 2013, 4 :2 (25 January 2013)
Abstract | Full text | PDF | PubMed
41.
A cross-sectional study of the prevalence and risk factors for hypertension in rural Nepali women
Rumana
J
Khan,
Christine
P
Stewart,
Parul
Christian,
Kerry
J
Schulze,
Lee
Wu,
Steven
C
LeClerq,
Subarna
K
Khatry,
Keith
P
West
BMC Public Health 2013, 13 :55 (21 January 2013)
Abstract | Full text | PDF | PubMed
42.
Comparative analysis of complete mitochondrial genome sequences confirms independent origins of plant-parasitic nematodes
Tahera
Sultana,
Jiyeon
Kim,
Sang-Hwa
Lee,
Hyerim
Han,
Sanghee
Kim,
Gi-Sik
Min,
Steven
A
Nadler,
Joong-Ki
Park
BMC Evolutionary Biology 2013, 13 :12 (18 January 2013)
Abstract | Full text | PDF | PubMed
43.
JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison
Phillip
Seitzer,
Tu Anh
Huynh,
Marc
T
Facciotti
BMC Bioinformatics 2013, 14 :18 (16 January 2013)
Abstract | Full text | PDF | PubMed
44.
Response to Dr. Roger’s letter : further studies are necessary in order to conclude a causal association between the consumption of monosodium L-glutamate (MSG) and the prevalence of metabolic syndrome in the rural Thai population
Tonkla
Insawang,
Carlo
Selmi,
Ubon
Cha’on,
M Eric
Gershwin,
Puangrat
Yongvanit,
Vitoon
Prasongwattana
Nutrition & Metabolism 2013, 10 :10 (15 January 2013)
Abstract | Full text | PDF | PubMed
45.
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
Todd
J
Treangen,
Sergey
Koren,
Daniel
D
Sommer,
Bo
Liu,
Irina
Astrovskaya,
Brian
Ondov,
Aaron
E
Darling,
Adam
M
Phillippy,
Mihai
Pop
Genome Biology 2013, 14 :R2 (15 January 2013)
Abstract | Provisional PDF
| PubMed
|
Editor’s summary
A modular, metagenomic analysis and assembly pipeline that inputs next-generation sequencing reads to generate genomic scaffolds and open reading frames
46.
Novel lanthanide-labeled metal oxide nanoparticles improve the measurement of in vivo clearance and translocation
Aamir
D
Abid,
Donald
S
Anderson,
Gautom
K
Das,
Laura
S
Van Winkle,
Ian
M
Kennedy
Particle and Fibre Toxicology 2013, 10 :1 (10 January 2013)
Abstract | Full text | PDF | PubMed
47.
Functional genomics of a generalist parasitic plant: Laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression
Loren
A
Honaas,
Eric
K
Wafula,
Zhenzhen
Yang,
Joshua
P
Der,
Norman
J
Wickett,
Naomi
S
Altman,
Christopher
G
Taylor,
John
I
Yoder,
Michael
P
Timko,
James
H
Westwood,
Claude
W
dePamphilis
BMC Plant Biology 2013, 13 :9 (9 January 2013)
Abstract | Full text | PDF | PubMed
48.
Cellular versus acellular matrix devices in treatment of diabetic foot ulcers: study protocol for a comparative efficacy randomized controlled trial
Hadar
Lev-Tov,
Chin-Shang
Li,
Sara
Dahle,
Roslyn Rivkah
Isseroff
Trials 2013, 14 :8 (9 January 2013)
Abstract | Full text | PDF | PubMed
49.
Injury-elicited stressors alter endogenous retrovirus expression in lymphocytes depending on cell type and source lymphoid organ
Kang-Hoon
Lee,
Debora
Lim,
Tajia
Green,
David
Greenhalgh,
Kiho
Cho
BMC Immunology 2013, 14 :2 (5 January 2013)
Abstract | Full text | PDF | PubMed
50.
A specific family of interspersed repeats (SINEs) facilitates meiotic synapsis in mammals
Matthew
E
Johnson,
Ross
A
Rowsey,
Sofia
Shirley,
Catherine
VandeVoort,
Jeffrey
Bailey,
Terry
Hassold
Molecular Cytogenetics 2013, 6 :1 (1 January 2013)
Abstract | Full text | PDF | PubMed