Identification of significant periodic genes in microarray gene expression data
BMC Bioinformatics 2005, 6:286 (30 November 2005)
An approach using both Bartlett's C-statistic and Fisher's G-statistic can successfully identity genes which are significantly periodic in microarray time series data.
Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene
BMC Biology 2004, 2:6 (7 May 2004)
The sea urchin's Runx transcription factor is crucial both for embryonic development and for cell proliferation and differentiation, according to a study using `morpholino' antisense oligonucleotides to knock down gene expression.
Global nucleosome distribution and the regulation of transcription in yeast
Genome Biology 2004, 5:243 (30 September 2004)
Recent studies show that active regulatory regions of the yeast genome have a lower density of nucleosomes than other regions, and that there is an inverse correlation between nucleosome density and the transcription rate of a gene.
Sea urchin vault structure, composition, and differential localization during development
BMC Developmental Biology 2005, 5:3 (14 February 2005)
Chromatin reassembly following RNA polymerase II transcription
Epigenetics & Chromatin 2013, 6(Suppl 1):O27 (18 March 2013)
Use of adenoviral E1A protein to analyze K18 promoter deregulation in colon carcinoma cells discloses a role for CtBP1 and BRCA1
BMC Molecular Biology 2005, 6:8 (14 April 2005)
A topological algorithm for identification of structural domains of proteins
BMC Bioinformatics 2007, 8:237 (3 July 2007)
CBF β is a facultative Runx partner in the sea urchin embryo
BMC Biology 2006, 4:4 (9 February 2006)
Like its mammalian homologs, sea urchin Core Binding Factor beta binds to a Runx partner, but although Runt-1 deficiency affects embryonic differentiation and cell survival, CBFbeta knockdown affects only differentiation.
Runx-dependent expression of PKC is critical for cell survival in the sea urchin embryo
BMC Biology 2005, 3:18 (2 August 2005)
Sea urchin embryonic knockdown of either Runx protein or protein kinase C causes extensive apoptosis, while Runx deficiency is rescued by inhibition of caspase-3 and by PKC mRNA injection, providing evidence that Runx maintains PKC levels to ensure cell survival.
Characterization of the minimum domain required for targeting budding yeast myosin II to the site of cell division
BMC Biology 2006, 4:19 (26 June 2006)
The budding yeast myosin II protein Myo1 is likely to exist as a trimer and within the Myo1 minimum localization domain as now defined, the hinge region is required for contraction of the contractile ring during cytokinesis.
Histones: should I stay or should I go?
Genome Biology 2005, 6:306 (14 January 2005)
A report on the American Society for Biochemistry and Molecular Biology symposium 'Transcriptional Regulation by Chromatin and RNA polymerase II', Lake Tahoe, USA, 29 October-1 November 2004.
Chromatin dynamics rule the genome
Genome Biology 2005, 6:355 (31 October 2005)
A report on the FASEB Summer Research Conference 'Chromatin and Transcription', Snowmass, USA, 9-14 July 2005.
Detecting epistatic interactions contributing to human gene expression using the CEPH family data
BMC Proceedings 2007, 1(Suppl 1):S67 (18 December 2007)
Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics
Genome Biology 2011, 12(Suppl 1):P9 (19 September 2011)