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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Stowers Institute for Medical Research

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1.

Poster presentation   Open Access

A mathematical modeling perspective on the advantages of single receptor type convergence in the olfactory glomeruli

Lakshmi Chandrasekaran, C Ron Yu BMC Neuroscience 2013, 14(Suppl 1):P428 (8 July 2013)

Full text | PDF

2.

Review   Open Access Highly Accessed

UpSETing chromatin during non-coding RNA production

Swaminathan Venkatesh, Jerry L Workman, Michaela Smolle Epigenetics & Chromatin 2013, 6:16 (5 June 2013)

Abstract | Full text | PDF | PubMed

3.

Oral presentation   Open Access

Chromatin reassembly following RNA polymerase II transcription

Swaminathan Venkatesh, Michaela Smolle, Hua Li, Madelaine Gogol, Ying Zhang, Florence Laurens, Michael P Washburn, Jerry L Workman Epigenetics & Chromatin 2013, 6(Suppl 1):O27 (18 March 2013)

Full text | PDF

4.

Question and Answer   Open Access Highly Accessed

Q&A: What is regeneration, and why look to planarians for answers?

Alejandro Sánchez Alvarado BMC Biology 2012, 10:88 (8 November 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

What controls regeneration? Alejandro Sanchez Alvarado explores this old question in biology in a Q&A explaining what we understand from planarians - non-parasitic flatworms all of whose tissues can regenerate.

5.

Research article   Open Access Highly Accessed

Evolution of anterior Hox regulatory elements among chordates

Alfonso Natale, Carrie Sims, Maria L Chiusano, Alessandro Amoroso, Enrico D'Aniello, Laura Fucci, Robb Krumlauf, Margherita Branno, Annamaria Locascio BMC Evolutionary Biology 2011, 11:330 (15 November 2011)

Abstract | Full text | PDF | PubMed

6.

Poster presentation   Open Access

Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

David M Kristensen, Arcady R Mushegian, Eugene V Koonin Genome Biology 2011, 12(Suppl 1):P9 (19 September 2011)

Full text | PDF

7.

Research article   Open Access Highly Accessed

Lipid droplets as ubiquitous fat storage organelles in C. elegans

Shaobing O Zhang, Rhonda Trimble, Fengli Guo, Ho Mak BMC Cell Biology 2010, 11:96 (8 December 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A combination of biochemical, histological and microscopy approaches demonstrates that C. elegans uses lipid droplets as ubiquitous fat storage organelles, with promising implications for the study of fat metabolism in this model organism.

8.

Research article   Open Access

Sex-biased transcription enhancement by a 5' tethered Gal4-MOF histone acetyltransferase fusion protein in Drosophila

Anja H Schiemann, Fang Li, Vikki M Weake, Esther J Belikoff, Kent C Klemmer, Stanley A Moore, Maxwell J Scott BMC Molecular Biology 2010, 11:80 (9 November 2010)

Abstract | Full text | PDF | PubMed

9.

Methodology article   Open Access

Multispectral fingerprinting for improved in vivo cell dynamics analysis

Paul M Kulesa, Jessica M Teddy, Miranda Smith, Richard Alexander, Cameron HJ Cooper, Rusty Lansford, Rebecca McLennan BMC Developmental Biology 2010, 10:101 (24 September 2010)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access

The role of noise and positive feedback in the onset of autosomal dominant diseases

William J Bosl, Rong Li BMC Systems Biology 2010, 4:93 (29 June 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

11.

Research article   Open Access

Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation

Rebecca L Nugent, Anna Johnsson, Brian Fleharty, Madelaine Gogol, Yongtao Xue-Franzén, Chris Seidel, Anthony PH Wright, Susan L Forsburg BMC Genomics 2010, 11:59 (22 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

12.

Research article   Open Access

Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos

Shaobing O Zhang, Sachin Mathur, Gaye Hattem, Olivier Tassy, Olivier Pourquié BMC Genomics 2010, 11:13 (7 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

13.

Research article   Open Access

Evolutionary history of the iroquois/Irx genes in metazoans

Pierre Kerner, Aissam Ikmi, Dario Coen, Michel Vervoort BMC Evolutionary Biology 2009, 9:74 (15 April 2009)

Abstract | Full text | PDF | PubMed

14.

Research article   Open Access Highly Accessed

Genomic and biochemical approaches in the discovery of mechanisms for selective neuronal vulnerability to oxidative stress

Xinkun Wang, Asma Zaidi, Ranu Pal, Alexander S Garrett, Rogelio Braceras, Xue-wen Chen, Mary L Michaelis, Elias K Michaelis BMC Neuroscience 2009, 10:12 (19 February 2009)

Abstract | Full text | PDF | PubMed

15.

Research   Open Access

Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes

Kenneth K Lee, Selene K Swanson, Laurence Florens, Michael P Washburn, Jerry L Workman Epigenetics & Chromatin 2009, 2:2 (18 February 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

16.

Research   Open Access Highly Accessed

Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells

Britta Hartmann, Robert Castelo, Marco Blanchette, Stephanie Boue, Donald C Rio, Juan Valcárcel Genome Biology 2009, 10:R11 (29 January 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A genome-wide analysis of the response to insulin and wingless activation using splicing-sensitive microarrays shows distinct but overlapping programs of transcriptional and posttranscriptional regulation.

17.

Research   Open Access

A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae

Diana Baumann, Malcolm Cook, Limei Ma, Arcady Mushegian, Erik Sanders, Joel Schwartz, C Ron Yu Biology Direct 2008, 3:28 (3 July 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

18.

Research   Open Access Highly Accessed

Engineering bacteria to solve the Burnt Pancake Problem

Karmella A Haynes, Marian L Broderick, Adam D Brown, Trevor L Butner, James O Dickson, W Lance Harden, Lane H Heard, Eric L Jessen, Kelly J Malloy, Brad J Ogden, Sabriya Rosemond, Samantha Simpson, Erin Zwack, A Malcolm Campbell, Todd T Eckdahl, Laurie J Heyer, Jeffrey L Poet Journal of Biological Engineering 2008, 2:8 (20 May 2008)

Abstract | Full text | PDF | PubMed | 1 comment |  Editor’s summary

E. coli cells can be engineered to sort DNA fragments into a specific order and orientation, similar to the mathematical burnt pancake problem, providing a flexible new tool for manipulating transgenic DNA in vivo.

19.

Research article   Open Access

A statistical framework for consolidating "sibling" probe sets for Affymetrix GeneChip data

Hua Li, Dongxiao Zhu, Malcolm Cook BMC Genomics 2008, 9:188 (24 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

20.

Proceedings   Open Access

Detecting epistatic interactions contributing to human gene expression using the CEPH family data

Hua Li, Guimin Gao, Jian Li, Grier P Page, Kui Zhang BMC Proceedings 2007, 1(Suppl 1):S67 (18 December 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

21.

Research   Open Access Highly Accessed

Evolutionary history of bacteriophages with double-stranded DNA genomes

Galina Glazko, Vladimir Makarenkov, Jing Liu, Arcady Mushegian Biology Direct 2007, 2:36 (6 December 2007)

Abstract | Full text | PDF | PubMed

22.

Research article   Open Access Highly Accessed

A topological algorithm for identification of structural domains of proteins

Frank Emmert-Streib, Arcady Mushegian BMC Bioinformatics 2007, 8:237 (3 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

23.

Research article   Open Access

The non-dosage compensated Lsp1α gene of Drosophila melanogaster escapes acetylation by MOF in larval fat body nuclei, but is flanked by two dosage compensated genes

Vikki M Weake, Maxwell J Scott BMC Molecular Biology 2007, 8:35 (19 May 2007)

Abstract | Full text | PDF | PubMed

24.

Research   Open Access

The Genopolis Microarray Database

Andrea Splendiani, Marco Brandizi, Gael Even, Ottavio Beretta, Norman Pavelka, Mattia Pelizzola, Manuel Mayhaus, Maria Foti, Giancarlo Mauri, Paola Ricciardi-Castagnoli BMC Bioinformatics 2007, 8(Suppl 1):S21 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

25.

Research article   Open Access

Characterization of the minimum domain required for targeting budding yeast myosin II to the site of cell division

Ida MB Lister, Nicola J Tolliday, Rong Li BMC Biology 2006, 4:19 (26 June 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The budding yeast myosin II protein Myo1 is likely to exist as a trimer and within the Myo1 minimum localization domain as now defined, the hinge region is required for contraction of the contractile ring during cytokinesis.

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