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Work published with BioMed Central in the last 12 months by researchers at University of California, San Diego
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Research article
Spiperone enhances intracellular calcium level and inhibits the Wnt signaling pathway Lu D, Carson DA BMC Pharmacology 2009, 9 :13 (30 November 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Eosinophil and T cell markers predict functional decline in COPD patients D'Armiento JM, Scharf SM, Roth MD, Connett JE, Ghio A, Sternberg D, Goldin JG, Louis TA, Mao JT, O'Connor GT, Ramsdell JW, Ries AL, Schluger NW, Sciurba FC, Skeans MA, Voelker H, Walter RE, Wendt CH, Weinmann GG, Wise RA, Foronjy RF Respiratory Research 2009, 10 :113 (19 November 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Evidence for genetic association of RORB with bipolar disorder McGrath CL, Glatt SJ, Sklar P, Le-Niculescu H, Kuczenski R, Doyle AE, Biederman J, Mick E, Faraone SV, Niculescu AB, Tsuang MT BMC Psychiatry 2009, 9 :70 (12 November 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Rapid and sustained improvements in health-related quality of life, fatigue, and other patient-reported outcomes in rheumatoid arthritis patients treated with certolizumab pegol plus methotrexate over 1 year: results from the RAPID 1 randomized controlled trial Strand V, Mease P, Burmester GR, Nikaï E, Coteur G, van Vollenhoven R, Combe B, Keystone EC, Kavanaugh A Arthritis Research & Therapy 2009, 11 :R170 (12 November 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
A remarkable diversity of bone-eating worms (Osedax ; Siboglinidae; Annelida) Vrijenhoek RC, Johnson SB, Rouse GW BMC Biology 2009, 7 :74 (10 November 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Effect of small interference RNA (siRNA) for ADAMTS5 on intervertebral disc degeneration in the rabbit anular needle-puncture model Seki S, Asanuma-Abe Y, Masuda K, Kawaguchi Y, Asanuma K, Muehleman C, Iwai A, Kimura T Arthritis Research & Therapy 2009, 11 :R166 (4 November 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Methodology article
Analysis and comparison of very large metagenomes with fast clustering and functional annotation Li W BMC Bioinformatics 2009, 10 :359 (28 October 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Genetical genomic determinants of alcohol consumption in rats and humans Tabakoff B, Saba L, Printz M, Flodman P, Hodgkinson C, Goldman D, Koob G, Richardson HN, Kechris K, Bell RL, Hübner N, Heinig M, Pravenec M, Mangion J, Legault L, Dongier M, Conigrave KM, Whitfield JB, Saunders J, Grant B, Hoffman PL, WHO/ISBRA Study on State and Trait Markers of Alcoholism BMC Biology 2009, 7 :70 (27 October 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
TGF-1 induced epithelial to mesenchymal transition (EMT) in human bronchial epithelial cells is enhanced by IL-1 Doerner AM, Zuraw BL Respiratory Research 2009, 10 :100 (27 October 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations Conrad TM, Joyce AR, Applebee MK, Barrett CL, Xie B, Gao Y, Palsson BØ Genome Biology 2009, 10 :R118 (22 October 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Method
Enrichment of sequencing targets from the human genome by solution hybridization Tewhey R, Nakano M, Wang X, Pabón-Peña C, Novak B, Giuffre A, Lin E, Happe S, Roberts DN, LeProust EM, Topol EJ, Harismendy O, Frazer KA Genome Biology 2009, 10 :R116 (16 October 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Difference in the regulation of IL-8 expression induced by uropathogenic E. coli between two kinds of urinary tract epithelial cells Tsai KW, Lai HT, Tsai TC, Wu YC, Yang YT, Chen KY, Chen CM, Li YSJ, Chen CN Journal of Biomedical Science 2009, 16 :91 (3 October 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Software
An editor for pathway drawing and data visualization in the Biopathways Workbench Byrnes RW, Cotter D, Maer A, Li J, Nadeau D, Subramaniam S BMC Systems Biology 2009, 3 :99 (2 October 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
KSRP-PMR1-exosome association determines parathyroid hormone mRNA levels and stability in transfected cells Nechama M, Peng Y, Bell O, Briata P, Gherzi R, Schoenberg DR, Naveh-Many T BMC Cell Biology 2009, 10 :70 (23 September 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
The Sam domain of the lipid phosphatase Ship2 adopts a common model to interact with Arap3-Sam and EphA2-Sam Leone M, Cellitti J, Pellecchia M BMC Structural Biology 2009, 9 :59 (18 September 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis Feala JD, Coquin L, Zhou D, Haddad GG, Paternostro G, McCulloch AD BMC Systems Biology 2009, 3 :91 (9 September 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life Valas RE, Bourne PE Biology Direct 2009, 4 :30 (25 August 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
A fractionation method to identify qauntitative changes in protein expression mediated by IGF-1 on the proteome of murine C2C12 myoblasts King CC, Bouic K, Friedmann T Proteome Science 2009, 7 :28 (11 August 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Poster presentation
Regulation of smooth muscle-specific gene expression by cGMP-dependent protein kinase Zhang T, Schwappacher R, Zhuang S, Pilz RB BMC Pharmacology 2009, 9 (Suppl 1):P79 (11 August 2009) [Abstract ] [Full text ] [PDF ]
Oral presentation
Role of PKG II in osteoblast mechanotransduction Rangaswami H, Zhuang NMS, Chen Y, Pilz RB BMC Pharmacology 2009, 9 (Suppl 1):S32 (11 August 2009) [Abstract ] [Full text ] [PDF ]
Research article
The Toll-Like receptor adaptor TRIF contributes to otitis media pathogenesis and recovery Leichtle A, Hernandez M, Pak K, Webster NJ, Wasserman SI, Ryan AF BMC Immunology 2009, 10 :45 (5 August 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Enhancement of the priming efficacy of DNA vaccines encoding dendritic cell-targeted antigens by synergistic toll-like receptor ligands Grossmann C, Tenbusch M, Nchinda G, Temchura V, Nabi G, Stone GW, Kornbluth RS, Überla K BMC Immunology 2009, 10 :43 (3 August 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Study protocol
Actos Now for the prevention of diabetes (ACT NOW) study DeFronzo RA, Banerji MA, Bray GA, Buchanan TA, Clement S, Henry RR, Kitabchi AE, Mudaliar S, Musi N, Ratner R, Reaven PD, Schwenke D, Stentz FB, Tripathy D BMC Endocrine Disorders 2009, 9 :17 (29 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Effect of response format for clinical vignettes on reporting quality of physician practice Pham T, Roy C, Mariette X, Lioté F, Durieux P, Ravaud P BMC Health Services Research 2009, 9 :128 (28 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts Harkins GW, Delport W, Duffy S, Wood N, Monjane AL, Owor BE, Donaldson L, Saumtally S, Triton G, Briddon RW, Shepherd DN, Rybicki EP, Martin DP, Varsani A Virology Journal 2009, 6 :104 (16 July 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Novel transcriptional profile in wrist muscles from cerebral palsy patients Smith LR, Pontén E, Hedström Y, Ward SR, Chambers HG, Subramaniam S, Lieber RL BMC Medical Genomics 2009, 2 :44 (14 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Proceedings
The value of avian genomics to the conservation of wildlife Romanov MN, Tuttle EM, Houck ML, Modi WS, Chemnick LG, Korody ML, Mork EMS, Otten CA, Renner T, Jones KC, Dandekar S, Papp JC, Da Y, NISC Comparative Sequencing Program , Green ED, Magrini V, Hickenbotham MT, Glasscock J, McGrath S, Mardis ER, Ryder OA BMC Genomics 2009, 10 (Suppl 2):S10 (14 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Correspondence
Magnetic resonance imaging (MRI) has failed to distinguish between smaller gut regions and larger haemal sinuses in sea urchins (Echinodermata: Echinoidea) Holland ND, Ghiselin MT BMC Biology 2009, 7 :39 (13 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Poster presentation
Measuring spike train synchrony between neuronal populations Kreuz T, Chicharro D, Andrzejak RG BMC Neuroscience 2009, 10 (Suppl 1):P271 (13 July 2009) [Abstract ] [Full text ] [PDF ]
Commentary
Alzheimer's disease therapeutic research: the path forward Aisen PS Alzheimers Res Ther 2009, 1 :2 (9 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Short Report
Preliminary investigation of plasma levels of sex hormones and human growth factor(s), and P300 latency as correlates to cognitive decline as a function of gender Braverman ER, Chen TJH, Chen ALC, Kerner MM, Tung H, Waite RL, Schoolfield J, Blum K BMC Research Notes 2009, 2 :126 (7 July 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Methodology article
ResBoost: characterizing and predicting catalytic residues in enzymes Alterovitz R, Arvey A, Sankararaman S, Dallett C, Freund Y, Sjölander K BMC Bioinformatics 2009, 10 :197 (27 June 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Effect of hydroxyurea on the promoter occupancy profiles of tumor suppressor p53 and p73 Huang V, Lu X, Jiang Y, Wang JYJ BMC Biology 2009, 7 :35 (26 June 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Dealing with heterogeneity of treatment effects: is the literature up to the challenge? Gabler NB, Duan N, Liao D, Elmore JG, Ganiats TG, Kravitz RL Trials 2009, 10 :43 (19 June 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Software
Parallelization and optimization of genetic analyses in isolation by distance web service Turner JL, Kelley ST, Otto JS, Valafar F, Bohonak AJ BMC Genetics 2009, 10 :28 (19 June 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Poster presentation
Extracellular matrix promotes pathogenic treatment of AIDS-associated Kaposi's sarcoma at Hôpital General in Yaoundé, Cameroon Ndom P, Bissek ZK, Takouchop C, Obama MT, Bengono G, Ryder RW Infectious Agents and Cancer 2009, 4 (Suppl 2):P30 (17 June 2009) [Abstract ] [Full text ] [PDF ]
Review
What does the structure-function relationship of the HIV-1 Tat protein teach us about developing an AIDS vaccine? Campbell GR, Loret EP Retrovirology 2009, 6 :50 (25 May 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Phase 1-2a multicenter dose-escalation study of ezatiostat hydrochloride liposomes for injection (Telintra® , TLK199), a novel glutathione analog prodrug in patients with myelodysplastic syndrome Raza A, Galili N, Callander N, Ochoa L, Piro L, Emanuel P, Williams S, Burris H, Faderl S, Estrov Z, Curtin P, Larson RA, Keck JG, Jones M, Meng L, Brown GL Journal of Hematology & Oncology 2009, 2 :20 (13 May 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes Jamshidi N, Palsson BO BMC Systems Biology 2009, 3 :44 (30 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Validation of an abbreviated Treatment Satisfaction Questionnaire for Medication (TSQM-9) among patients on antihypertensive medications Bharmal M, Payne K, Atkinson MJ, Desrosiers MP, Morisky DE, Gemmen E Health and Quality of Life Outcomes 2009, 7 :36 (27 April 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Review
Non-expanded adipose stromal vascular fraction cell therapy for multiple sclerosis Riordan NH, Ichim TE, Min WP, Wang H, Solano F, Lara F, Alfaro M, Rodriguez JP, Harman RJ, Patel AN, Murphy MP, Lee RR, Minev B Journal of Translational Medicine 2009, 7 :29 (24 April 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Human embryonic stem cells hemangioblast express HLA-antigens Basak GW, Yasukawa S, Alfaro A, Halligan S, Srivastava AS, Min WP, Minev B, Carrier E Journal of Translational Medicine 2009, 7 :27 (22 April 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Amphioxus encodes the largest known family of green fluorescent proteins, which have diversified into distinct functional classes Bomati EK, Manning G, Deheyn DD BMC Evolutionary Biology 2009, 9 :77 (21 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Methodology article
EFICAz2 : enzyme function inference by a combined approach enhanced by machine learning Arakaki AK, Huang Y, Skolnick J BMC Bioinformatics 2009, 10 :107 (13 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction Raghunathan A, Reed J, Shin S, Palsson B, Daefler S BMC Systems Biology 2009, 3 :38 (8 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Complementarity of ultrasound and fluorescence imaging in an orthotopic mouse model of pancreatic cancer Snyder CS, Kaushal S, Kono Y, Tran Cao HS, Hoffman RM, Bouvet M BMC Cancer 2009, 9 :106 (8 April 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Establishing an implementation network: lessons learned from community-based participatory research Lindamer LA, Lebowitz B, Hough RL, Garcia P, Aguirre A, Halpain MC, Depp C, Jeste DV Implementation Science 2009, 4 :17 (31 March 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research article
Folding machineries displayed on a cation-exchanger for the concerted refolding of cysteine- or proline-rich proteins Lee DH, Kim SG, Kweon DH, Seo JH BMC Biotechnology 2009, 9 :27 (26 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Connecting extracellular metabolomic measurements to intracellular flux states in yeast Mo ML, Palsson BØ, Herrgård MJ BMC Systems Biology 2009, 3 :37 (25 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Calnuc plays a role in dynamic distribution of G Lin P, Fischer T, Lavoie C, Huang H, Farquhar MG Molecular Neurodegeneration 2009, 4 :15 (25 March 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Identification and bioinformatic analysis of the membrane proteins of synechocystis sp. PCC 6803 Wang Y, Xu W, Chitnis PR Proteome Science 2009, 7 :11 (25 March 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Proceedings
Identification of temporal association rules from time-series microarray data sets Nam H, Lee KY, Lee D BMC Bioinformatics 2009, 10 (Suppl 3):S6 (19 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Review
Jacobsen syndrome Mattina T, Perrotta CS, Grossfeld P Orphanet Journal of Rare Diseases 2009, 4 :9 (7 March 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Methodology article
Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation Barrett CL, Herrgard MJ, Palsson B BMC Systems Biology 2009, 3 :30 (6 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Matrix metalloproteinase-7 facilitates immune access to the CNS in experimental autoimmune encephalomyelitis Buhler LA, Samara R, Guzman E, Wilson CL, Krizanac-Bengez L, Janigro D, Ethell DW BMC Neuroscience 2009, 10 :17 (6 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Pediatricians' weight assessment and obesity management practices Huang JS, Donohue M, Golnari G, Fernandez S, Walker-Gallego E, Galvan K, Briones C, Tamai J, Becerra K BMC Pediatrics 2009, 9 :19 (5 March 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Feasibility investigation of allogeneic endometrial regenerative cells Zhong Z, Patel AN, Ichim TE, Riordan NH, Wang H, Min WP, Woods EJ, Reid M, Mansilla E, Marin GH, Drago H, Murphy MP, Minev B Journal of Translational Medicine 2009, 7 :15 (20 February 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Minireview
Recent developments in Alzheimer's disease therapeutics Rafii MS, Aisen PS BMC Medicine 2009, 7 :7 (19 February 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Wnt activity guides facial branchiomotor neuron migration, and involves the PCP pathway and JNK and ROCK kinases Vivancos V, Chen P, Spassky N, Qian D, Dabdoub A, Kelley M, Studer M, Guthrie S Neural Development 2009, 4 :7 (11 February 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ]
Research
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA Genome Biology 2009, 10 :R17 (11 February 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Genetic analysis of hybridization and introgression between wild mongoose and brown lemurs Pastorini J, Zaramody A, Curtis DJ, Nievergelt CM, Mundy NI BMC Evolutionary Biology 2009, 9 :32 (5 February 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Simultaneous phylogeny reconstruction and multiple sequence alignment Yue F, Shi J, Tang J BMC Bioinformatics 2009, 10 (Suppl 1):S11 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
Genome-scale constraint-based modeling of Geobacter metallireducens Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R BMC Systems Biology 2009, 3 :15 (28 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Circadian polymorphisms associated with affective disorders Kripke DF, Nievergelt CM, Joo EJ, Shekhtman T, Kelsoe JR Journal of Circadian Rhythms 2009, 7 :2 (23 January 2009) [Abstract ] [Full Text ] [PDF ] [PubMed ] [Related articles ] [2 comments ]
Research article
YKL-40 tissue expression and plasma levels in patients with ovarian cancer Høgdall EVS, Ringsholt M, Høgdall CK, Christensen IJ, Johansen JS, Kjaer SK, Blaakaer J, Ostenfeld-Møller L, Price PA, Christensen LH BMC Cancer 2009, 9 :8 (9 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research article
The association of posttraumatic stress disorder and metabolic syndrome: a study of increased health risk in veterans Heppner PS, Crawford EF, Haji UA, Afari N, Hauger RL, Dashevsky BA, Horn PS, Nunnink SE, Baker DG BMC Medicine 2009, 7 :1 (9 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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1 induced epithelial to mesenchymal transition (EMT) in human bronchial epithelial cells is enhanced by IL-1
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