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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of California, San Diego

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1.

Research article   Open Access

Heart fatty acid binding protein and Abeta-associated Alzheimer's neurodegeneration

Rahul S Desikan, Wesley K Thompson, Dominic Holland, Christopher P Hess, James B Brewer, Henrik Zetterberg, Kaj Blennow, Ole A Andreassen, Linda K McEvoy, Bradley T Hyman, Anders M Dale Molecular Neurodegeneration 2013, 8:39 (2 October 2013)

Abstract | Provisional PDF

2.

Research   Open Access

Effects of varying duty cycle and pulse width on high-intensity focused ultrasound (HIFU)-induced transcranial thrombolysis

Thilo Hölscher, Rema Raman, David J Fisher, Golnaz Ahadi, Eyal Zadicario, Arne Voie Journal of Therapeutic Ultrasound 2013, 1:18 (1 October 2013)

Abstract | Full text | PDF

3.

Research   Open Access

Probabilistic inference and ranking of gene regulatory pathways as a shortest-path problem

James D Jensen, Daniel M Jensen, Mark J Clement, Quinn O Snell BMC Bioinformatics 2013, 14(Suppl 13):S5 (1 October 2013)

Abstract | Full text | PDF

4.

Primary research   Open Access

Posttraumatic stress disorder and health: a preliminary study of group differences in health and health behaviors

Kathryn M Godfrey, Laurie A Lindamer, Sheeva Mostoufi, Niloofar Afari Annals of General Psychiatry 2013, 12:30 (26 September 2013)

Abstract | Provisional PDF | PubMed

5.

Research article   Open Access

Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes)

Hsiu-Chin Lin, Philip A Hastings BMC Evolutionary Biology 2013, 13:210 (25 September 2013)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access

Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages

Samuel L Díaz-Muñoz, Olivier Tenaillon, Daniel Goldhill, Kristen Brao, Paul E Turner, Lin Chao BMC Evolutionary Biology 2013, 13:206 (24 September 2013)

Abstract | Full text | PDF | PubMed

7.

Research   Open Access

Determining who responds better to a computer- vs. human-delivered physical activity intervention: results from the community health advice by telephone (CHAT) trial

Eric B Hekler, Matthew P Buman, Jennifer Otten, Cynthia M Castro, Lauren Grieco, Bess Marcus, Robert H Friedman, Melissa A Napolitano, Abby C King International Journal of Behavioral Nutrition and Physical Activity 2013, 10:109 (22 September 2013)

Abstract | Full text | PDF | PubMed

8.

Research   Open Access

Homology modeling and ligand docking of Mitogen-activated protein kinase-activated protein kinase 5 (MK5)

Inger Lindin, Yimingjiang Wuxiuer, Irina Kufareva, Ruben Abagyan, Ugo Moens, Ingebrigt Sylte, Aina Ravna Theoretical Biology and Medical Modelling 2013, 10:56 (14 September 2013)

Abstract | Full text | PDF | PubMed

9.

Research   Open Access

On the design of clone-based haplotyping

Christine Lo, Rui Liu, Jehyuk Lee, Kimberly Robasky, Susan Byrne, Carolina Lucchesi, John Aach, George Church, Vineet Bafna, Kun Zhang Genome Biology 2013, 14:R100 (12 September 2013)

Abstract | Provisional PDF | PubMed |  Editor’s summary

Practical guidelines for the development and design of clone-based methods to achieve long range, high-resolution and accurate haplotypes

10.

Research   Open Access

Identification of the Plasmodium berghei resistance locus 9 linked to survival on chromosome 9

Selina ER Bopp, Evelyn Rodrigo, Gonzalo E González-Páez, Mary Frazer, S Barnes, Clarissa Valim, James Watson, John R Walker, Christian Schmedt, Elizabeth A Winzeler Malaria Journal 2013, 12:316 (11 September 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This paper describes the mapping of a host response locus to chromosome 9 in the mouse in response to infection by P. berghei ANKA strain.

11.

Research   Open Access

Methodological challenges in monitoring new treatments for rare diseases: lessons from the cryopyrin-associated periodic syndrome registry

Hugh Tilson, Paola Primatesta, Dennis Kim, Barbara Rauer, Philip N Hawkins, Hal M Hoffman, Jasmin Kuemmerle-Deschner, Tom van der Poll, Ulrich A Walker Orphanet Journal of Rare Diseases 2013, 8:139 (10 September 2013)

Abstract | Full text | PDF | PubMed

12.

Research article   Open Access

Interactions between Social/ behavioral factors and ADRB2 genotypes may be associated with health at advanced ages in China

Yi Zeng, Lingguo Cheng, Ling Zhao, Qihua Tan, Qiushi Feng, Huashuai Chen, Ke Shen, Jianxin Li, Fengyu Zhang, Huiqing Cao, Simon G Gregory, Ze Yang, Jun Gu, Wei Tao, Xiao-Li Tian, Elizabeth R Hauser BMC Geriatrics 2013, 13:91 (9 September 2013)

Abstract | Full text | PDF | PubMed

13.

Methodology   Open Access

The implementation research institute: training mental health implementation researchers in the United States

Enola K Proctor, John Landsverk, Ana A Baumann, Brian S Mittman, Gregory A Aarons, Ross C Brownson, Charles Glisson, David Chambers Implementation Science 2013, 8:105 (5 September 2013)

Abstract | Full text | PDF | PubMed

14.

Research article   Open Access

Current practices in library/informatics instruction in academic libraries serving medical schools in the western United States: a three-phase action research study

Jonathan D Eldredge, Karen M Heskett, Terry Henner, Josephine P Tan BMC Medical Education 2013, 13:119 (4 September 2013)

Abstract | Full text | PDF | PubMed

15.

Research article   Open Access Highly Accessed

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

Eric I Sun, Semen A Leyn, Marat D Kazanov, Milton H Saier, Pavel S Novichkov, Dmitry A Rodionov BMC Genomics 2013, 14:597 (2 September 2013)

Abstract | Full text | PDF | PubMed

16.

Research article   Open Access

Inferring the Effective TOR-Dependent Network: A Computational Study in Yeast

Shahin Mohammadi, Shankar Subramaniam, Ananth Grama BMC Systems Biology 2013, 7:84 (30 August 2013)

Abstract | Provisional PDF | PubMed

17.

Method   Open Access

Virmid: accurate detection of somatic mutations with sample impurity inference

Sangwoo Kim, Kyowon Jeong, Kunal Bhutani, Jeong Ho Lee, Anand Patel, Eric Scott, Hojung Nam, Hayan Lee, Joseph G Gleeson, Vineet Bafna Genome Biology 2013, 14:R90 (29 August 2013)

Abstract | Provisional PDF | PubMed |  Editor’s summary

Virmid is a method for estimating the proportion of healthy cells in a disease sample to facilitate variant calling

18.

Oral presentation   Open Access

Non-genomic thyroid hormone signaling through NO/cGMP/PKGII

Hema Kalyanaraman, Raphaela Schwappacher, Jisha Joshua, Shunhui Zhuang, Brian Scott, Wolfgang Dillmann, John Frangos, Renate B Pilz BMC Pharmacology and Toxicology 2013, 14(Suppl 1):O26 (29 August 2013)

Full text | PDF

19.

Poster presentation   Open Access

cGMP-dependent protein kinase Iβ phosphorylates and regulates the function of the actin/myosin-associated protein caldesmon

Darren E Casteel, Raphaela Schwappacher, Hema Rangaswami, Jacqueline Su-Yuo BMC Pharmacology and Toxicology 2013, 14(Suppl 1):P13 (29 August 2013)

Full text | PDF

20.

Research article   Open Access Highly Accessed

S-Nitrosylation of parkin as a novel regulator of p53-mediated neuronal cell death in sporadic Parkinson’s disease

Carmen R Sunico, Tomohiro Nakamura, Edward Rockenstein, Michael Mante, Anthony Adame, Shing Chan, Traci Newmeyer, Eliezer Masliah, Nobuki Nakanishi, Stuart A Lipton Molecular Neurodegeneration 2013, 8:29 (28 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The S-nitrosylation of parkin, a neuroprotective protein, leads to p53-mediated neuronal cell death, which may partly underlie the pathophysiology of sporadic Parkinson¿s disease, giving opportunities for developing novel therapeutics.

21.

Research article   Open Access

Long term healthcare costs of infants who survived neonatal necrotizing enterocolitis: a retrospective longitudinal study among infants enrolled in Texas Medicaid

Vaidyanathan Ganapathy, Joel W Hay, Jae H Kim, Martin L Lee, David J Rechtman BMC Pediatrics 2013, 13:127 (20 August 2013)

Abstract | Full text | PDF | PubMed

22.

Research   Open Access Highly Accessed

Renal cancer-selective Englerin A induces multiple mechanisms of cell death and autophagy

Richard T Williams, Alice L Yu, Mitchell B Diccianni, Emmanuel A Theodorakis, Ayse Batova Journal of Experimental & Clinical Cancer Research 2013, 32:57 (20 August 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

23.

Research   Open Access Highly Accessed

HIV latency and integration site placement in five cell-based models

Scott Sherrill-Mix, Mary K Lewinski, Marylinda Famiglietti, Alberto Bosque, Nirav Malani, Karen E Ocwieja, Charles C Berry, David Looney, Liang Shan, Luis M Agosto, Matthew J Pace, Robert F Siliciano, Una O’Doherty, John Guatelli, Vicente Planelles, Frederic D Bushman Retrovirology 2013, 10:90 (16 August 2013)

Abstract | Full text | PDF | PubMed

24.

Study protocol   Open Access

Engineering online and in-person social networks to sustain physical activity: application of a conceptual model

Liza S Rovniak, James F Sallis, Jennifer L Kraschnewski, Christopher N Sciamanna, Elizabeth J Kiser, Chester A Ray, Vernon M Chinchilli, Ding Ding, Stephen A Matthews, Melissa Bopp, Daniel R George, Melbourne F Hovell BMC Public Health 2013, 13:753 (14 August 2013)

Abstract | Full text | PDF | PubMed

25.

Short Report   Open Access

Role of hypoxia inducible factor-1 in keratinocyte inflammatory response and neutrophil recruitment

Emma Leire, Josh Olson, Hart Isaacs, Victor Nizet, Andrew Hollands Journal of Inflammation 2013, 10:28 (10 August 2013)

Abstract | Full text | PDF | PubMed

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