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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Washington State University

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1.

Research   Open Access

Quantitative proteomic analysis in HCV-induced HCC reveals sets of proteins with potential significance for racial disparity

Simon T Dillon, Manoj K Bhasin, Xiaoxing Feng, David W Koh, Sayed S Daoud Journal of Translational Medicine 2013, 11:239 (1 October 2013)

Abstract | Provisional PDF

2.

Research   Open Access

The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis

Andrew M Heekin, Felix D Guerrero, Kylie G Bendele, Leo Saldivar, Glen A Scoles, Scot E Dowd, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A Brayton Parasites & Vectors 2013, 6:276 (23 September 2013)

Abstract | Full text | PDF |  Editor’s summary

Gene expression in Babesia bovis-infected cattle tick ovary is investigated by subtracted library, microarray, and Serial Analysis of Gene Expression protocols. Image: The cattle tick, Rhipicephalus microplus.

3.

Research article   Open Access

Production of ethanol from hemicellulose fraction of cocksfoot grass using pichia stipitis

Stephen Njoku, Jens Iversen, Hinrich Uellendahl, Birgitte Ahring Sustainable Chemical Processes 2013, 1:13 (6 August 2013)

Abstract | Full text | PDF

4.

Original article   Open Access

Conversion of C6 and C5 sugars in undetoxified wet exploded bagasse hydrolysates using Scheffersomyces (Pichia) stipitis CBS6054

Rajib Biswas, Hinrich Uellendahl, Birgitte K Ahring AMB Express 2013, 3:42 (29 July 2013)

Abstract | Full text | PDF | PubMed

5.

Research article   Open Access

Gene bionetworks that regulate ovarian primordial follicle assembly

Eric Nilsson, Bin Zhang, Michael K Skinner BMC Genomics 2013, 14:496 (23 July 2013)

Abstract | Full text | PDF | PubMed

6.

Original investigation   Open Access

Exercise and diabetes have opposite effects on the assembly and O-GlcNAc modification of the mSin3A/HDAC1/2 complex in the heart

Emily J Cox, Susan A Marsh Cardiovascular Diabetology 2013, 12:101 (9 July 2013)

Abstract | Full text | PDF | PubMed

7.

Poster presentation   Open Access

Towards a dynamic clamp for neuro-chemical modalities

Alexander G Dimitrov, Wei Xue, Jie Xu, Catalina Rivera, Gan Yu, Jihen Zhao, Hyuck-Jin Kwon BMC Neuroscience 2013, 14(Suppl 1):P232 (8 July 2013)

Full text | PDF

8.

Short report   Open Access

Loss of neurovirulence is associated with reduction of cerebral capillary sequestration during acute Babesia bovis infection

Kerry S Sondgeroth, Terry F McElwain, Andrew J Allen, Annie V Chen, Audrey OT Lau Parasites & Vectors 2013, 6:181 (18 June 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Cerebral biopsies of spleen intact calves inoculated intravenously with a parental virulent or passage-derived attenuated strain of B. bovis were evaluated for capillary sequestration. Sequestration was significantly reduced, but not eliminated, after multiple passages and attenuation. Image: Sequestration of infected erythrocytes in a cerebral capillary of a calf infected with virulent Babesia bovis.

9.

Research   Open Access

"Intelligent Environments: a manifesto"

Juan C Augusto, Vic Callaghan, Diane Cook, Achilles Kameas, Ichiro Satoh Human-centric Computing and Information Sciences 2013, 3:12 (15 June 2013)

Abstract | Full text | PDF

10.

Review   Open Access Highly Accessed

Multiscale perspectives of virus entry via endocytosis

Eric Barrow, Anthony V Nicola, Jin Liu Virology Journal 2013, 10:177 (5 June 2013)

Abstract | Full text | PDF | PubMed

11.

Research   Open Access

MutS homologue hMSH4: interaction with eIF3f and a role in NHEJ-mediated DSB repair

Yen-Lin Chu, Xiling Wu, Yang Xu, Chengtao Her Molecular Cancer 2013, 12:51 (2 June 2013)

Abstract | Full text | PDF | PubMed | 1 comment

12.

Short report   Open Access

Induction of long intergenic non-coding RNA HOTAIR in lung cancer cells by type I collagen

Yan Zhuang, Xiang Wang, Hong T Nguyen, Ying Zhuo, Xinpeng Cui, Claire Fewell, Erik K Flemington, Bin Shan Journal of Hematology & Oncology 2013, 6:35 (13 May 2013)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access

Alterations in expression of endometrial genes coding for proteins secreted into the uterine lumen during conceptus elongation in cattle

Niamh Forde, Jai P Mehta, Paul A McGettigan, Solomon Mamo, Fuller W Bazer, Thomas E Spencer, Pat Lonergan BMC Genomics 2013, 14:321 (10 May 2013)

Abstract | Full text | PDF | PubMed

14.

Research   Open Access Highly Accessed

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ray Ming, Robert VanBuren, Yanling Liu, Mei Yang, Yuepeng Han, Lei-Ting Li, Qiong Zhang, Min-Jeong Kim, Michael C Schatz, Michael Campbell, Jingping Li, John E Bowers, Haibao Tang, Eric Lyons, Ann A Ferguson, Giuseppe Narzisi, David R Nelson, Crysten E Blaby-Haas, Andrea R Gschwend, Yuannian Jiao, Joshua P Der, Fanchang Zeng, Jennifer Han, Xiang Min, Karen A Hudson, Ratnesh Singh, Aleel K Grennan, Steven J Karpowicz, Jennifer R Watling, Kikukatsu Ito et al. Genome Biology 2013, 14:R41 (10 May 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | f1000 |  Editor’s summary

The genome of the long-living, slowly evolving sacred lotus reveals the genetic mechanisms underlying its adaptation to limited nutrient availability

15.

Research article   Open Access

Estimation of bovine leukemia virus (BLV) proviral load harbored by lymphocyte subpopulations in BLV-infected cattle at the subclinical stage of enzootic bovine leucosis using BLV-CoCoMo-qPCR

Carlos Panei, Shin-nosuke Takeshima, Takashi Omori, Tetsuo Nunoya, William C Davis, Hiroshi Ishizaki, Kazuhiro Matoba, Yoko Aida BMC Veterinary Research 2013, 9:95 (4 May 2013)

Abstract | Full text | PDF | PubMed

16.

Research article   Open Access Highly Accessed

Dynamic modeling of yeast meiotic initiation

Debjit Ray, Yongchun Su, Ping Ye BMC Systems Biology 2013, 7:37 (1 May 2013)

Abstract | Full text | PDF | PubMed

17.

Research article   Open Access

Transcriptional pathways associated with the slow growth phenotype of transformed Anaplasma marginale

Sebastián Aguilar Pierlé, Gena Kenitra Hammac, Guy H Palmer, Kelly A Brayton BMC Genomics 2013, 14:272 (22 April 2013)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access Highly Accessed

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

Dario Cantu, Vanesa Segovia, Daniel MacLean, Rosemary Bayles, Xianming Chen, Sophien Kamoun, Jorge Dubcovsky, Diane GO Saunders, Cristobal Uauy BMC Genomics 2013, 14:270 (22 April 2013)

Abstract | Full text | PDF | PubMed

19.

Nano Express   Open Access

Efficient biocatalyst by encapsulating lipase into nanoporous gold

Xiaoyu Du, Xueying Liu, Yufei Li, Chao Wu, Xia Wang, Ping Xu Nanoscale Research Letters 2013, 8:180 (19 April 2013)

Abstract | Full text | PDF | PubMed

20.

Research article   Open Access

Accumulation profiles of PrPSc in hemal nodes of naturally and experimentally scrapie-infected sheep

Rohana P Dassanayake, Thomas C Truscott, M Özyiğit, Dongyue Zhuang, David A Schneider, Katherine I O’Rourke BMC Veterinary Research 2013, 9:82 (19 April 2013)

Abstract | Full text | PDF | PubMed

21.

Research   Open Access

Novel monosaccharide fermentation products in Caldicellulosiruptor saccharolyticus identified using NMR spectroscopy

Nancy G Isern, Junfeng Xue, Jaya V Rao, John R Cort, Birgitte K Ahring Biotechnology for Biofuels 2013, 6:47 (3 April 2013)

Abstract | Full text | PDF | PubMed

22.

Methodology   Open Access

Rapid separation of developing Arabidopsis seeds from siliques for RNA or metabolite analysis

Philip David Bates, Jeremy Burke Jewell, John Browse Plant Methods 2013, 9:9 (26 March 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This simple method greatly speeds up the process of harvesting developing seeds from their siliques while preserving their contents in liquid nitrogen. It should be a boon for anyone who uses Arabidopsis as a model system for studying seed development.

23.

Research article   Open Access

QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea

Céline Hamon, Clarice J Coyne, Rebecca J McGee, Angélique Lesné, Robert Esnault, Pierre Mangin, Marie Hervé, Isabelle Le Goff, Gwenaëlle Deniot, Martine Roux-Duparque, Gérard Morin, Kevin E McPhee, Régine Delourme, Alain Baranger, Marie-Laure Pilet-Nayel BMC Plant Biology 2013, 13:45 (16 March 2013)

Abstract | Full text | PDF | PubMed

24.

Short Report   Open Access

Cell division promotes efficient retrotransposition in a stable L1 reporter cell line

Yi Xie, Lajos Mates, Zoltán Ivics, Zsuzsanna Izsvák, Sandra L Martin, Wenfeng An Mobile DNA 2013, 4:10 (6 March 2013)

Abstract | Full text | PDF | PubMed

25.

Research article   Open Access

A candidate gene based approach validates Md-PG1 as the main responsible for a QTL impacting fruit texture in apple (Malus x domestica Borkh)

Sara Longhi, Martha T Hamblin, Livio Trainotti, Cameron P Peace, Riccardo Velasco, Fabrizio Costa BMC Plant Biology 2013, 13:37 (4 March 2013)

Abstract | Full text | PDF | PubMed

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