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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Washington State University

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1.

Research article   Open Access

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids

Hyun Jo Koo, Eric T McDowell, Xiaoqiang Ma, Kevin A Greer, Jeremy Kapteyn, Zhengzhi Xie, Anne Descour, HyeRan Kim, Yeisoo Yu, David Kudrna, Rod A Wing, Carol A Soderlund, David R Gang BMC Plant Biology 2013, 13:27 (15 February 2013)

Abstract | Provisional PDF | PubMed

2.

Research   Open Access

Genetic characterization of Theileria equi infecting horses in North America: evidence for a limited source of U.S. introductions

Carina M Hall, Joseph D Busch, Glen A Scoles, Kristina A Palma-Cagle, Massaro W Ueti, Lowell S Kappmeyer, David M Wagner Parasites & Vectors 2013, 6:35 (11 February 2013)

Abstract | Provisional PDF | PubMed |  Editor’s summary

This study found North American Theileria equi were placed in two of the four previously described 18S groups. We also found a large amount of microsatellite diversity in U.S. isolates using a novel MSAT genotyping panel we developed using the first T. equi whole genome sequence. Image: Maltese cross formation within erythrocyte.

3.

Proceedings   Open Access

FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action

Minho Lee, Sangjo Han, Hyeshik Chang, Youn-Sig Kwak, David M Weller, Dongsup Kim BMC Genomics 2013, 14(Suppl 1):S6 (21 January 2013)

Abstract | Full text | PDF | PubMed

4.

Research article   Open Access

Use of somatic mutations to quantify random contributions to mouse development

Wenyu Zhou, Yunbing Tan, Donovan J Anderson, Eva M Crist, Hannele Ruohola-Baker, Stephen J Salipante, Marshall S Horwitz BMC Genomics 2013, 14:39 (18 January 2013)

Abstract | Full text | PDF | PubMed

5.

Research article   Open Access

Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation

Judson A Ward, Jasbir Bhangoo, Felicidad Fernández-Fernández, Patrick Moore, JD Swanson, Roberto Viola, Riccardo Velasco, Nahla Bassil, Courtney A Weber, Daniel J Sargent BMC Genomics 2013, 14:2 (16 January 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access

A specific family of interspersed repeats (SINEs) facilitates meiotic synapsis in mammals

Matthew E Johnson, Ross A Rowsey, Sofia Shirley, Catherine VandeVoort, Jeffrey Bailey, Terry Hassold Molecular Cytogenetics 2013, 6:1 (1 January 2013)

Abstract | Full text | PDF | PubMed

7.

Research   Open Access

Arrhenotoky and oedipal mating in the northern fowl mite (Ornithonyssus sylviarum) (Acari: Gamasida: Macronyssidae)

John B McCulloch, Jeb P Owen Parasites & Vectors 2012, 5:281 (4 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The northern fowl mite is a widespread ectoparasite of birds and a pest of poultry. We report that unmated females produce male offspring and are able to mate with sons to subsequently produce both sexes. This makes all females, regardless of mating status, capable of transmitting to new hosts to initiate infestations. Image: Scanning electron micrograph of an adult, female northern fowl mite.

8.

Research article   Open Access Highly Accessed

Comparative genomics and transcriptomics of trait-gene association

Sebastián Pierlé, Michael J Dark, Dani Dahmen, Guy H Palmer, Kelly A Brayton BMC Genomics 2012, 13:669 (26 November 2012)

Abstract | Full text | PDF | PubMed

9.

Research article   Open Access Highly Accessed

Rapid transcriptome characterization and parsing of sequences in a non-model host-pathogen interaction; pea-Sclerotinia sclerotiorum

Xiaofeng Zhuang, Kevin E McPhee, Tristan E Coram, Tobin L Peever, Martin I Chilvers BMC Genomics 2012, 13:668 (26 November 2012)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access Highly Accessed

Comparative genomic analysis and phylogenetic position of Theileria equi

Lowell S Kappmeyer, Mathangi Thiagarajan, David R Herndon, Joshua D Ramsay, Elisabet Caler, Appolinaire Djikeng, Joseph J Gillespie, Audrey OT Lau, Eric H Roalson, Joana C Silva, Marta G Silva, Carlos E Suarez, Massaro W Ueti, Vishvanath M Nene, Robert H Mealey, Donald P Knowles, Kelly A Brayton BMC Genomics 2012, 13:603 (9 November 2012)

Abstract | Full text | PDF | PubMed

11.

Research article   Open Access

The salmonid myostatin gene family: a novel model for investigating mechanisms that influence duplicate gene fate

Casey B Lawson, Takumu Niino, Russell A Hermansen, Vera Brok-Volchanskaya, Melissa F Jackson, Dilip K Garikipati, David A Liberles, Buel D Rodgers BMC Evolutionary Biology 2012, 12:202 (8 October 2012)

Abstract | Full text | PDF | PubMed

12.

Research   Open Access

Epigenetic transgenerational inheritance of somatic transcriptomes and epigenetic control regions

Michael K Skinner, Mohan Manikkam, Md M Haque, Bin Zhang, Marina I Savenkova Genome Biology 2012, 13:R91 (3 October 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Inherited changes in transcriptional networks associated with epimutations in rats treated with the fungicide vinclozolin

13.

Research article   Open Access

Transcriptome analyses of early cucumber fruit growth identifies distinct gene modules associated with phases of development

Kaori Ando, Kevin M Carr, Rebecca Grumet BMC Genomics 2012, 13:518 (2 October 2012)

Abstract | Full text | PDF | PubMed

14.

Research   Open Access Highly Accessed

Impacts of genetically engineered crops on pesticide use in the U.S. -- the first sixteen years

Charles M Benbrook Environmental Sciences Europe 2012, 24:24 (28 September 2012)

Abstract | Full text | PDF

15.

Research   Open Access

Behavioral and physiological female responses to male sex ratio bias in a pond-breeding amphibian

Kristine L Grayson, Stephen P De Lisle, Jerrah E Jackson, Samuel J Black, Erica J Crespi Frontiers in Zoology 2012, 9:24 (18 September 2012)

Abstract | Full text | PDF | PubMed

16.

Research article   Open Access Highly Accessed

Genome wide identification of chilling responsive microRNAs in Prunus persica

Abdelali Barakat, Aditya Sriram, Joseph Park, Tetyana Zhebentyayeva, Dorrie Main, Albert Abbott BMC Genomics 2012, 13:481 (15 September 2012)

Abstract | Full text | PDF | PubMed

17.

Research   Open Access

Endometrial stromal beta-catenin is required for steroid-dependent mesenchymal-epithelial cross talk and decidualization

Ling Zhang, Amanda L Patterson, Lihua Zhang, Jose M Teixeira, James K Pru Reproductive Biology and Endocrinology 2012, 10:75 (7 September 2012)

Abstract | Full text | PDF | PubMed

18.

Research   Open Access

Analysis of Babesia bovis infection-induced gene expression changes in larvae from the cattle tick, Rhipicephalus (Boophilus) microplus

Andrew M Heekin, Felix D Guerrero, Kylie G Bendele, Leo Saldivar, Glen A Scoles, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A Brayton Parasites & Vectors 2012, 5:162 (7 August 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This study reports the reaction of the Rhipicephalus microplus larval transcriptome in response to infection by Babesia bovis. Our approach detected a difference in transcript levels related to protein and lipid metabolism in infected ticks versus uninfected ticks. Image: Rhipicephalus microplus feeding on a cow.

19.

Research   Open Access

Rapid selection and identification of Miscanthus genotypes with enhanced glucan and xylan yields from hydrothermal pretreatment followed by enzymatic hydrolysis

Taiying Zhang, Charles E Wyman, Katrin Jakob, Bin Yang Biotechnology for Biofuels 2012, 5:56 (3 August 2012)

Abstract | Full text | PDF | PubMed

20.

Research   Open Access

Silencing of Apoptosis-Inducing factor and poly(ADP-ribose) glycohydrolase reveals novel roles in breast cancer cell death after chemotherapy

Xiaoxing Feng, Yiran Zhou, Alicia M Proctor, Mandi M Hopkins, Mengwei Liu, David W Koh Molecular Cancer 2012, 11:48 (29 July 2012)

Abstract | Full text | PDF | PubMed

21.

Research   Open Access

Feasibility of filamentous fungi for biofuel production using hydrolysate from dilute sulfuric acid pretreatment of wheat straw

Yubin Zheng, Xiaochen Yu, Jijiao Zeng, Shulin Chen Biotechnology for Biofuels 2012, 5:50 (23 July 2012)

Abstract | Full text | PDF | PubMed

22.

Poster presentation   Open Access

Modeling the chemical dynamics of chloride ion indicators

Alexander J Redford, Susan Ingram, Alexander Dimitrov BMC Neuroscience 2012, 13(Suppl 1):P113 (16 July 2012)

Full text | PDF

23.

Poster presentation   Open Access

Influence of inhibition on encoding vocalizations in the mouse auditory midbrain

Alexander G Dimitrov, Graham I Cummins, Zachary M Mayko, Christine V Portfors BMC Neuroscience 2012, 13(Suppl 1):P72 (16 July 2012)

Full text | PDF

24.

Research article   Open Access

Characterization of fatty acid modifying enzyme activity in staphylococcal mastitis isolates and other bacteria

Thea Lu, Joo Park, Kelleen Parnell, Larry K Fox, Mark A McGuire BMC Research Notes 2012, 5:323 (22 June 2012)

Abstract | Full text | PDF | PubMed

25.

Research article   Open Access

An elm EST database for identifying leaf beetle egg-induced defense genes

Kerstin Büchel, Eric McDowell, Will Nelson, Anne Descour, Jonathan Gershenzon, Monika Hilker, Carol Soderlund, David R Gang, Trevor Fenning, Torsten Meiners BMC Genomics 2012, 13:242 (15 June 2012)

Abstract | Full text | PDF | PubMed

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