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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at Georgia Institute of Technology

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	1.	Research article Sequencing platform and library preparation choices impact viral metagenomes Sergei A Solonenko, J Ignacio-Espinoza, Adriana Alberti, Corinne Cruaud, Steven Hallam, Kostas Konstantinidis, Gene Tyson, Patrick Wincker, Matthew B Sullivan BMC Genomics 2013, 14:320 (10 May 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Research *Enhanced characteristics of genetically modified switchgrass (Panicum virgatum* L.) for high biofuel production** Hui Shen, Charleson R Poovaiah, Angela Ziebell, Timothy J Tschaplinski, Sivakumar Pattathil, Erica Gjersing, Nancy L Engle, Rui Katahira, Yunqiao Pu, Robert Sykes, Fang Chen, Arthur J Ragauskas, Jonathan R Mielenz, Michael G Hahn, Mark Davis, C Neal Stewart, Richard A Dixon Biotechnology for Biofuels 2013, 6:71 (7 May 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research DNA methylation and transcriptional noise Iksoo Huh, Jia Zeng, Taesung Park, Soojin V Yi Epigenetics & Chromatin 2013, 6:9 (26 April 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research article Gene expression patterns following unilateral traumatic brain injury reveals a local pro-inflammatory and remote anti-inflammatory response Todd E White, Gregory D Ford, Monique C Surles-Zeigler, Alicia S Gates, Michelle C LaPlaca, Byron D Ford BMC Genomics 2013, 14:282 (25 April 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research GENESIS-CBA: An Agent-based Model of Peer Evaluation and Selection in the Internet Interdomain Network Aemen Lodhi, Amogh Dhamdhere, Constantine Dovrolis Complex Adaptive Systems Modeling 2013, 1:10 (24 April 2013) Abstract \| Provisional PDF
	6.	Research Oxidative stress-induced Notch1 signaling promotes cardiogenic gene expression in mesenchymal stem cells Archana V Boopathy, Karl D Pendergrass, Pao Lin Che, Young-Sup Yoon, Michael E Davis Stem Cell Research & Therapy 2013, 4:43 (18 April 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Oxidative stress may promote cardiac differentiation of adult stem or progenitor cells by increasing Notch1 signalling, potentially improving cell-based therapy for cardiac repair and regeneration.
	7.	Anniversary Update Segment assembly, structure alignment and iterative simulation in protein structure prediction Yang Zhang, Jeffrey Skolnick BMC Biology 2013, 11:44 (15 April 2013) Full text \| PDF \| PubMed \| Cited on BioMed Central
	8.	Research article Histological image classification using biologically interpretable shape-based features Sonal Kothari, John H Phan, Andrew N Young, May D Wang BMC Medical Imaging 2013, 13:9 (13 March 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Research article Function and design of the Nox1 system in vascular smooth muscle cells Weiwei Yin, Eberhard O Voit BMC Systems Biology 2013, 7:20 (11 March 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Review Addressing the gaps: sex differences in osteoarthritis of the knee Barbara D Boyan, Laura L Tosi, Richard D Coutts, Roger M Enoka, David A Hart, Daniel P Nicolella, Karen J Berkley, Kathleen A Sluka, C Kent Kwoh, Mary I O’Connor, Wendy M Kohrt, Eileen Resnick Biology of Sex Differences 2013, 4:4 (4 February 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Review Assessing the molecular structure basis for biomass recalcitrance during dilute acid and hydrothermal pretreatments Yunqiao Pu, Fan Hu, Fang Huang, Brian H Davison, Arthur J Ragauskas Biotechnology for Biofuels 2013, 6:15 (28 January 2013) Abstract \| Full text \| PDF \| PubMed
	12.	Research article A fast least-squares algorithm for population inference R Mitchell Parry, May D Wang BMC Bioinformatics 2013, 14:28 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Research CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome Hao Zheng, Hongwei Wu, Jinping Li, Shi-Wen Jiang BMC Medical Genomics 2013, 6(Suppl 1):S13 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Original article Remittances and labor supply in post-conflict Tajikistan Patricia Justino, Olga N Shemyakina IZA Journal of Labor & Development 2012, 1:8 (31 December 2012) Abstract \| Full text \| PDF
	15.	Review Mechanical contributors to sex differences in idiopathic knee osteoarthritis Daniel P Nicolella, Mary I O’Connor, Roger M Enoka, Barbara D Boyan, David A Hart, Eileen Resnick, Karen J Berkley, Kathleen A Sluka, C Kent Kwoh, Laura L Tosi, Richard D Coutts, Lorena M Havill, Wendy M Kohrt Biology of Sex Differences 2012, 3:28 (23 December 2012) Abstract \| Full text \| PDF \| PubMed
	16.	Review Neural and psychosocial contributions to sex differences in knee osteoarthritic pain Kathleen A Sluka, Karen J Berkley, Mary I O’Connor, Daniel P Nicolella, Roger M Enoka, Barbara D Boyan, David A Hart, Eileen Resnick, C Kent Kwoh, Laura L Tosi, Richard D Coutts, Wendy M Kohrt Biology of Sex Differences 2012, 3:26 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	17.	Review Hydrodynamic modulation of pluripotent stem cells Krista M Fridley, Melissa A Kinney, Todd C McDevitt Stem Cell Research & Therapy 2012, 3:45 (20 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Todd McDevitt and colleagues discuss the use of hydrodynamic culture systems for the expansion and differentiation of pluripotent stem cells, and their role in developing high throughput cell generation systems.
	18.	Letter to the Editor Commenting on the effects of surface treated- and non-surface treated TiO₂ in the Caco-2 cell model James J Faust, Wen Zhang, Brian A Koeneman, Yongsheng Chen, David G Capco Particle and Fibre Toxicology 2012, 9:42 (12 November 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Research EVM and achievable data rate analysis of clipped OFDM signals in visible light communication Zhenhua Yu, Robert J Baxley, Guo Tong Zhou EURASIP Journal on Wireless Communications and Networking 2012, 2012:321 (26 October 2012) Abstract \| Full text \| PDF
	20.	Research Identification of inhibitors of ovarian cancer stem-like cells by high-throughput screening Roman Mezencev, Lijuan Wang, John F McDonald Journal of Ovarian Research 2012, 5:30 (18 October 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Research highlight Birds do it, bees do it, worms and ciliates do it too: DNA methylation from unexpected corners of the tree of life Soojin V Yi Genome Biology 2012, 13:174 (17 October 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Why this issue's research articles on DNA methylation in nematodes and ciliates are surprising, and what we can learn from them
	22.	Research Cell type-specific termination of transcription by transposable element sequences Andrew B Conley, I Jordan Mobile DNA 2012, 3:15 (30 September 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog Timothy J Tschaplinski, Robert F Standaert, Nancy L Engle, Madhavi Z Martin, Amandeep K Sangha, Jerry M Parks, Jeremy C Smith, Reichel Samuel, Nan Jiang, Yunqiao Pu, Arthur J Ragauskas, Choo Y Hamilton, Chunxiang Fu, Zeng-Yu Wang, Brian H Davison, Richard A Dixon, Jonathan R Mielenz Biotechnology for Biofuels 2012, 5:71 (21 September 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	24.	Research article Ceramide sphingolipid signaling mediates Tumor Necrosis Factor (TNF)-dependent toxicity via caspase signaling in dopaminergic neurons Terina N Martinez, Xi Chen, Sibali Bandyopadhyay, Alfred H Merrill, Malú G Tansey Molecular Neurodegeneration 2012, 7:45 (13 September 2012) Abstract \| Full text \| PDF \| PubMed
	25.	Research Adipose stem cells can secrete angiogenic factors that inhibit hyaline cartilage regeneration Christopher SD Lee, Olivia A Burnsed, Vineeth Raghuram, Jonathan Kalisvaart, Barbara D Boyan, Zvi Schwartz Stem Cell Research & Therapy 2012, 3:35 (24 August 2012) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology \| Editor’s summary Adipose stem cells (ASCs) secrete factors that can inhibit cartilage regeneration, and must be pre-treated or modified to reduce these effects before they may be used as a therapy to repair cartilage.