1.
What if we had whole-genome sequence data for millions of individuals?
Peter
M
Visscher,
Greg
Gibson
Genome Medicine 2013, 5 :80 (20 September 2013)
Full text | PDF | PubMed
|
Editor’s summary
Peter Visscher and Greg Gibson consider how having whole-genome sequence data for millions of individuals could affect our ability to predict disease susceptibility and other complex traits.
2.
Reproducibility of cine displacement encoding with stimulated echoes (DENSE) cardiovascular magnetic resonance for measuring left ventricular strains, torsion, and synchrony in mice
Christopher
M
Haggerty,
Sage
P
Kramer,
Cassi
M
Binkley,
David
K
Powell,
Andrea
C
Mattingly,
Richard
Charnigo,
Frederick
H
Epstein,
Brandon
K
Fornwalt
Journal of Cardiovascular Magnetic Resonance 2013, 15 :71 (27 August 2013)
Abstract | Full text | PDF | PubMed
3.
The fate of lignin during hydrothermal pretreatment
Heather
L
Trajano,
Nancy
L
Engle,
Marcus
Foston,
Arthur
J
Ragauskas,
Timothy
J
Tschaplinski,
Charles
E
Wyman
Biotechnology for Biofuels 2013, 6 :110 (1 August 2013)
Abstract | Full text | PDF | PubMed
4.
From personalized to public health genomics
Greg
Gibson,
Peter
M
Visscher
Genome Medicine 2013, 5 :60 (19 July 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Greg Gibson and Peter Visscher muse on the ways that personalized genomics could be harnessed and translated towards economic efficiencies and public health outcomes.
5.
Molecular profiling supports the role of epithelial-to-mesenchymal transition (EMT) in ovarian cancer metastasis
Loukia
N
Lili,
Lilya
V
Matyunina,
L
Walker,
Stephen
L
Wells,
Benedict
B
Benigno,
John
F
McDonald
Journal of Ovarian Research 2013, 6 :49 (10 July 2013)
Abstract | Full text | PDF | PubMed
6.
Dynamic feature selectivity in the thalamus of the rat whisker system
Clarissa
J
Shephard,
Daniel
C
Millard,
Garrett
B
Stanley
BMC Neuroscience 2013, 14 (Suppl 1):P372 (8 July 2013)
Full text | PDF
7.
A sparse coding model of V1 produces surround suppression effects in response to natural scenes
Allison
Giorno,
Mengchen
Zhu,
Christopher
J
Rozell
BMC Neuroscience 2013, 14 (Suppl 1):P335 (8 July 2013)
Full text | PDF
8.
Sparse coding model captures V1 population response statistics to natural movies
Mengchen
Zhu,
Ian
Stevenson,
Urs
Köster,
Charles
M
Gray,
Bruno
A
Olshausen,
Christopher
J
Rozell
BMC Neuroscience 2013, 14 (Suppl 1):P334 (8 July 2013)
Full text | PDF
9.
Perturbations can distinguish underlying dynamics in phase-locked two-neuron networks
Sharon
E
Norman,
Carmen
C
Canavier,
Robert
J
Butera
BMC Neuroscience 2013, 14 (Suppl 1):P50 (8 July 2013)
Full text | PDF
10.
Novel microstructure quantification framework for databasing, visualization, and analysis of microstructure data
Stephen
R
Niezgoda,
Anand
K
Kanjarla,
Surya
R
Kalidindi
Integrating Materials and Manufacturing Innovation 2013, 2 :3 (2 July 2013)
Abstract | Full text | PDF
11.
Whole Genome Sequencing in support of Wellness and Health Maintenance
Chirag
J
Patel,
Ambily
Sivadas,
Rubina
Tabassum,
Thanawadee
Preeprem,
Jing
Zhao,
Dalia
Arafat,
Rong
Chen,
Alexander
A
Morgan,
Gregory
S
Martin,
Kenneth
L
Brigham,
Atul
J
Butte,
Greg
Gibson
Genome Medicine 2013, 5 :58 (27 June 2013)
Abstract | Provisional PDF
| PubMed | Cited on BioMed Central | f1000
|
Editor’s summary
An exploration of the integration of genome sequencing into clinical care for healthy patients emphasises the importance of visualisation tools for clinical and genomic data.
12.
Sequencing platform and library preparation choices impact viral metagenomes
Sergei
A
Solonenko,
J
Ignacio-Espinoza,
Adriana
Alberti,
Corinne
Cruaud,
Steven
Hallam,
Kostas
Konstantinidis,
Gene
Tyson,
Patrick
Wincker,
Matthew
B
Sullivan
BMC Genomics 2013, 14 :320 (10 May 2013)
Abstract | Full text | PDF | PubMed
13.
Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production
Hui
Shen,
Charleson
R
Poovaiah,
Angela
Ziebell,
Timothy
J
Tschaplinski,
Sivakumar
Pattathil,
Erica
Gjersing,
Nancy
L
Engle,
Rui
Katahira,
Yunqiao
Pu,
Robert
Sykes,
Fang
Chen,
Arthur
J
Ragauskas,
Jonathan
R
Mielenz,
Michael
G
Hahn,
Mark
Davis,
C Neal
Stewart,
Richard
A
Dixon
Biotechnology for Biofuels 2013, 6 :71 (7 May 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
14.
DNA methylation and transcriptional noise
Iksoo
Huh,
Jia
Zeng,
Taesung
Park,
Soojin
V
Yi
Epigenetics & Chromatin 2013, 6 :9 (26 April 2013)
Abstract | Full text | PDF | PubMed
15.
Gene expression patterns following unilateral traumatic brain injury reveals a local pro-inflammatory and remote anti-inflammatory response
Todd
E
White,
Gregory
D
Ford,
Monique
C
Surles-Zeigler,
Alicia
S
Gates,
Michelle
C
LaPlaca,
Byron
D
Ford
BMC Genomics 2013, 14 :282 (25 April 2013)
Abstract | Full text | PDF | PubMed
16.
GENESIS-CBA: An Agent-based Model of Peer Evaluation
and Selection in the Internet Interdomain Network
Aemen
Lodhi,
Amogh
Dhamdhere,
Constantine
Dovrolis
Complex Adaptive Systems Modeling 2013, 1 :10 (24 April 2013)
Abstract | Provisional PDF
17.
Oxidative stress-induced Notch1 signaling promotes cardiogenic gene expression in mesenchymal stem cells
Archana
V
Boopathy,
Karl
D
Pendergrass,
Pao Lin
Che,
Young-Sup
Yoon,
Michael
E
Davis
Stem Cell Research & Therapy 2013, 4 :43 (18 April 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Oxidative stress may promote cardiac differentiation of adult stem or progenitor cells by increasing Notch1 signalling, potentially improving cell-based therapy for cardiac repair and regeneration.
18.
Segment assembly, structure alignment and iterative simulation in protein structure prediction
Yang
Zhang,
Jeffrey
Skolnick
BMC Biology 2013, 11 :44 (15 April 2013)
Full text | PDF | PubMed | Cited on BioMed Central
19.
Histological image classification using biologically interpretable shape-based features
Sonal
Kothari,
John
H
Phan,
Andrew
N
Young,
May
D
Wang
BMC Medical Imaging 2013, 13 :9 (13 March 2013)
Abstract | Full text | PDF | PubMed
20.
Function and design of the Nox1 system in vascular smooth muscle cells
Weiwei
Yin,
Eberhard
O
Voit
BMC Systems Biology 2013, 7 :20 (11 March 2013)
Abstract | Full text | PDF | PubMed
21.
Ultrametric networks: a new tool for phylogenetic analysis
Alberto
Apostolico,
Matteo
Comin,
Andres
Dress,
Laxmi
Parida
Algorithms for Molecular Biology 2013, 8 :7 (5 March 2013)
Abstract | Full text | PDF | PubMed
22.
Addressing the gaps: sex differences in osteoarthritis of the knee
Barbara
D
Boyan,
Laura
L
Tosi,
Richard
D
Coutts,
Roger
M
Enoka,
David
A
Hart,
Daniel
P
Nicolella,
Karen
J
Berkley,
Kathleen
A
Sluka,
C Kent
Kwoh,
Mary
I
O’Connor,
Wendy
M
Kohrt,
Eileen
Resnick
Biology of Sex Differences 2013, 4 :4 (4 February 2013)
Abstract | Full text | PDF | PubMed
23.
Assessing the molecular structure basis for biomass recalcitrance during dilute acid and hydrothermal pretreatments
Yunqiao
Pu,
Fan
Hu,
Fang
Huang,
Brian
H
Davison,
Arthur
J
Ragauskas
Biotechnology for Biofuels 2013, 6 :15 (28 January 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
24.
A fast least-squares algorithm for population inference
R Mitchell
Parry,
May
D
Wang
BMC Bioinformatics 2013, 14 :28 (23 January 2013)
Abstract | Full text | PDF | PubMed
25.
CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome
Hao
Zheng,
Hongwei
Wu,
Jinping
Li,
Shi-Wen
Jiang
BMC Medical Genomics 2013, 6 (Suppl 1):S13 (23 January 2013)
Abstract | Full text | PDF | PubMed