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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Florida

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1.

Research article   Open Access Highly Accessed

RNA-seq: technical variability and sampling

Lauren M McIntyre, Kenneth K Lopiano, Alison M Morse, Victor Amin, Ann L Oberg, Linda J Young, Sergey V Nuzhdin BMC Genomics 2011, 12:293 (6 June 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

2.

Research article   Open Access Highly Accessed

Plant growth strategies are remodeled by spaceflight

Anna-Lisa Paul, Claire E Amalfitano, Robert J Ferl BMC Plant Biology 2012, 12:232 (7 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Arabidopsis plants grown in the absence of gravity exhibit the same root growth morphology as controls grown on earth, indicating that their characteristic skewing and waving patterns are a gravity independent phenomenon.

3.

Research   Open Access Highly Accessed

Discovery and validation of cell cycle arrest biomarkers in human acute kidney injury

Kianoush Kashani, Ali Al-Khafaji, Thomas Ardiles, Antonio Artigas, Sean M Bagshaw, Max Bell, Azra Bihorac, Robert Birkhahn, Cynthia M Cely, Lakhmir S Chawla, Danielle L Davison, Thorsten Feldkamp, Lui G Forni, Michelle Gong, Kyle J Gunnerson, Michael Haase, James Hackett, Patrick M Honore, Eric AJ Hoste, Olivier Joannes-Boyau, Michael Joannidis, Patrick Kim, Jay L Koyner, Daniel T Laskowitz, Matthew E Lissauer, Gernot Marx, Peter A McCullough, Scott Mullaney, Marlies Ostermann, Thomas Rimmelé et al. Critical Care 2013, 17:R25 (6 February 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

Urine TIMP-2, and IGFBP7, two novel biomarkers for risk stratification of acute kidney injury, have been discovered and validated in more than 1000 critically ill patients. 

4.

Review   Open Access Highly Accessed

Review on solving the inverse problem in EEG source analysis

Roberta Grech, Tracey Cassar, Joseph Muscat, Kenneth P Camilleri, Simon G Fabri, Michalis Zervakis, Petros Xanthopoulos, Vangelis Sakkalis, Bart Vanrumste Journal of NeuroEngineering and Rehabilitation 2008, 5:25 (7 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

5.

Research article   Open Access Highly Accessed

The effects of six weeks of supplementation with multi-ingredient performance supplements and resistance training on anabolic hormones, body composition, strength, and power in resistance-trained men

Michael J Ormsbee, W Kyle Mandler, D David Thomas, Emery G Ward, Amber W Kinsey, Emily Simonavice, Lynn B Panton, Jeong-Su Kim Journal of the International Society of Sports Nutrition 2012, 9:49 (15 November 2012)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access Highly Accessed

Brief psychosocial education, not core stabilization, reduced incidence of low back pain: results from the Prevention of Low Back Pain in the Military (POLM) cluster randomized trial

Steven Z George, John D Childs, Deydre S Teyhen, Samuel S Wu, Alison C Wright, Jessica L Dugan, Michael E Robinson BMC Medicine 2011, 9:128 (29 November 2011)

Abstract | Full text | PDF | PubMed |  Editor’s summary

In contrast to core muscle stabilization, which is a traditional lumbar exercise, a brief psychosocial education technique can be a more effective strategy for the primary prevention of low back pain.

7.

Open letter   Free Highly Accessed

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

John A St John, Edward L Braun, Sally R Isberg, Lee G Miles, Amanda Y Chong, Jaime Gongora, Pauline Dalzell, Christopher Moran, Bertrand Bed'Hom, Arkhat Abzhanov, Shane C Burgess, Amanda M Cooksey, Todd A Castoe, Nicholas G Crawford, Llewellyn D Densmore, Jennifer C Drew, Scott V Edwards, Brant C Faircloth, Matthew K Fujita, Matthew J Greenwold, Federico G Hoffmann, Jonathan M Howard, Taisen Iguchi, Daniel E Janes, Shahid Khan, Satomi Kohno, AP Jason de Koning, Stacey L Lance, Fiona M McCarthy, John E McCormack et al. Genome Biology 2012, 13:415 (31 January 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

An Open Letter describing the project to sequence the genomes of the saltwater crocodile, the American alligator and the Indian gharial

8.

Research article   Open Access Highly Accessed

RNA-seq and microarray complement each other in transcriptome profiling

Sunitha Kogenaru, Qing Yan, Yinping Guo, Nian Wang BMC Genomics 2012, 13:629 (15 November 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

9.

Review   Open Access Highly Accessed

2013 WSES guidelines for management of intra-abdominal infections

Massimo Sartelli, Pierluigi Viale, Fausto Catena, Luca Ansaloni, Ernest Moore, Mark Malangoni, Frederick A Moore, George Velmahos, Raul Coimbra, Rao Ivatury, Andrew Peitzman, Kaoru Koike, Ari Leppaniemi, Walter Biffl, Clay Cothren Burlew, Zsolt J Balogh, Ken Boffard, Cino Bendinelli, Sanjay Gupta, Yoram Kluger, Ferdinando Agresta, Salomone Di Saverio, Imtiaz Wani, Alex Escalona, Carlos Ordonez, Gustavo P Fraga, Gerson Alves Pereira, Miklosh Bala, Yunfeng Cui, Sanjay Marwah et al. World Journal of Emergency Surgery 2013, 8:3 (8 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

10.

Research   Open Access Highly Accessed

Overlapping profiles of Aβ peptides in the Alzheimer's disease and pathological aging brains

Brenda D Moore, Paramita Chakrabarty, Yona Levites, Tom L Kukar, Ann-Marie Baine, Tina Moroni, Thomas B Ladd, Pritam Das, Dennis W Dickson, Todd E Golde Alzheimer's Research & Therapy 2012, 4:18 (23 May 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Extensive overlapping between amyloid β (Aβ) levels found in pathological ageing (PA) and Alzheimer's disease (AD) brains indicates that PA represents a prodromal stage of AD or resistance to toxic effects of Aβ.

11.

Methodology article   Open Access Highly Accessed

Comparison of next generation sequencing technologies for transcriptome characterization

P Kerr Wall, Jim Leebens-Mack, André S Chanderbali, Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P Tomsho, Yi Hu, John E Carlson, Hong Ma, Stephan C Schuster, Douglas E Soltis, Pamela S Soltis, Naomi Altman, Claude W dePamphilis BMC Genomics 2009, 10:347 (1 August 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

12.

Research article   Open Access Highly Accessed

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

Emilie Villar, Christophe Klopp, Céline Noirot, Evandro Novaes, Matias Kirst, Christophe Plomion, Jean-Marc Gion BMC Genomics 2011, 12:538 (2 November 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

13.

Research   Open Access Highly Accessed

EGFR/Src/Akt signaling modulates Sox2 expression and self-renewal of stem-like side-population cells in non-small cell lung cancer

Sandeep Singh, Jose Trevino, Namrata Bora-Singhal, Domenico Coppola, Eric Haura, Soner Altiok, Srikumar P Chellappan Molecular Cancer 2012, 11:73 (25 September 2012)

Abstract | Full text | PDF | PubMed

14.

Review   Open Access

Congenitally corrected transposition

Gonzalo A Wallis, Diane Debich-Spicer, Robert H Anderson Orphanet Journal of Rare Diseases 2011, 6:22 (14 May 2011)

Abstract | Full text | PDF | PubMed

15.

Research   Open Access Highly Accessed

Inspiratory muscle strength training improves weaning outcome in failure to wean patients: a randomized trial

A Daniel Martin, Barbara K Smith, Paul D Davenport, Eloise Harman, Ricardo J Gonzalez-Rothi, Maher Baz, A Joseph Layon, Michael J Banner, Lawrence J Caruso, Harsha Deoghare, Tseng-Tien Huang, Andrea Gabrielli Critical Care 2011, 15:R84 (7 March 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

16.

Research   Open Access Highly Accessed

100% Orange juice consumption is associated with better diet quality, improved nutrient adequacy, decreased risk for obesity, and improved biomarkers of health in adults: National Health and Nutrition Examination Survey, 2003-2006

Carol E O’Neil, Theresa A Nicklas, Gail C Rampersaud, Victor L Fulgoni III Nutrition Journal 2012, 11:107 (12 December 2012)

Abstract | Full text | PDF | PubMed

17.

Review   Open Access Highly Accessed

Mapping populations at risk: improving spatial demographic data for infectious disease modeling and metric derivation

Andrew J Tatem, Susana Adamo, Nita Bharti, Clara R Burgert, Marcia Castro, Audrey Dorelien, Gunter Fink, Catherine Linard, Mendelsohn John, Livia Montana, Mark R Montgomery, Andrew Nelson, Abdisalan M Noor, Deepa Pindolia, Greg Yetman, Deborah Balk Population Health Metrics 2012, 10:8 (16 May 2012)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access Highly Accessed

Identification of BACE2 as an avid ß-amyloid-degrading protease

Samer O Abdul-Hay, Tomoko Sahara, Melinda McBride, Dongcheul Kang, Malcolm A Leissring Molecular Neurodegeneration 2012, 7:46 (17 September 2012)

Abstract | Full text | PDF | PubMed

19.

Research   Open Access Highly Accessed

Controlling neuropathic pain by adeno-associated virus driven production of the anti-inflammatory cytokine, interleukin-10

Erin D Milligan, Evan M Sloane, Stephen J Langer, Pedro E Cruz, Marucia Chacur, Leah Spataro, Julie Wieseler-Frank, Sayamwong E Hammack, Steven F Maier, Terence R Flotte, John R Forsayeth, Leslie A Leinwand, Raymond Chavez, Linda R Watkins Molecular Pain 2005, 1:9 (25 February 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

20.

Research   Open Access Highly Accessed

Recent advances in basic neurosciences and brain disease: from synapses to behavior

Guo-Qiang Bi, Vadim Bolshakov, Guojun Bu, Catherine M Cahill, Zhou-Feng Chen, Graham L Collingridge, Robin L Cooper, Jens R Coorssen, Alaa El-Husseini, Vasco Galhardo, Wen-Biao Gan, Jianguo Gu, Kazuhide Inoue, John Isaac, Koichi Iwata, Zhengping Jia, Bong-Kiun Kaang, Mikito Kawamata, Satoshi Kida, Eric Klann, Tatsuro Kohno, Min Li, Xiao-Jiang Li, John F MacDonald, Karim Nader, Peter V Nguyen, Uhtaek Oh, Ke Ren, John C Roder, Michael W Salter et al. Molecular Pain 2006, 2:38 (30 December 2006)

Abstract | Full text | PDF | PubMed

21.

Review   Open Access Highly Accessed

Human movement data for malaria control and elimination strategic planning

Deepa K Pindolia, Andres J Garcia, Amy Wesolowski, David L Smith, Caroline O Buckee, Abdisalan M Noor, Robert W Snow, Andrew J Tatem Malaria Journal 2012, 11:205 (18 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This paper usefully documents sources of information on migration which may be of relevance to malaria transmission.

22.

Research article   Open Access Highly Accessed

Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis

Daniel A Hahn, Gregory J Ragland, D Shoemaker, David L Denlinger BMC Genomics 2009, 10:234 (19 May 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A large number of ESTs and microsatellite markers have been obtained by massively parallel pyrosequencing in the flesh fly S. crassipalpis, an important insect model for physiology and biochemistry

23.

Methodology   Open Access Highly Accessed

Web-based GIS: the vector-borne disease airline importation risk (VBD-AIR) tool

Zhuojie Huang, Anirrudha Das, Youliang Qiu, Andrew J Tatem International Journal of Health Geographics 2012, 11:33 (14 August 2012)

Abstract | Full text | PDF | PubMed

24.

Methodology   Open Access

Probabilistic approach to modeling lava flow inundation: a lava flow hazard assessment for a nuclear facility in Armenia

Laura J Connor, Charles B Connor, Khachatur Meliksetian, Ivan Savov Journal of Applied Volcanology 2012, 1:3 (25 January 2012)

Abstract | Full text | PDF

25.

Research   Open Access Highly Accessed

Genomic characterization of the Yersinia genus

Peter E Chen, Christopher Cook, Andrew C Stewart, Niranjan Nagarajan, Dan D Sommer, Mihai Pop, Brendan Thomason, Maureen Thomason, Shannon Lentz, Nichole Nolan, Shanmuga Sozhamannan, Alexander Sulakvelidze, Alfred Mateczun, Lei Du, Michael E Zwick, Timothy D Read Genome Biology 2010, 11:R1 (4 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Comparative Yersinia genomics identifies features responsible for the colonization of specific host habitats and the horizontal transfer of virulence determinants.

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