101.
Rapid fixation of non-native alleles revealed by genome-wide SNP analysis of hybrid tiger salamanders
Benjamin
M
Fitzpatrick,
Jarrett
R
Johnson,
D Kevin
Kump,
H Bradley
Shaffer,
Jeramiah
J
Smith,
S Randal
Voss
BMC Evolutionary Biology 2009, 9 :176 (24 July 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
In hybrid zones, introgression of a few strongly selected alleles from Barred Tiger Salamanders into the endangered Californian Tiger Salamander population might make preservation of genetically distinct populations of the endangered species difficult.
102.
Morphogenesis signaling components influence cell cycle regulation by cyclin dependent kinase
Brian
TD
Tobe,
Ana
A
Kitazono,
Jacqueline
S
Garcia,
Renee
A
Gerber,
Brooke
J
Bevis,
John
S
Choy,
Daniel
Chasman,
Stephen
J
Kron
Cell Division 2009, 4 :12 (1 July 2009)
Abstract | Full text | PDF | PubMed
103.
Leucine modulation of mitochondrial mass and oxygen consumption in skeletal muscle cells and adipocytes
Xiaocun
Sun,
Michael
B
Zemel
Nutrition & Metabolism 2009, 6 :26 (5 June 2009)
Abstract | Full text | PDF | PubMed
104.
The FAST technique: a simplified Agrobacterium -based transformation method for transient gene expression analysis in seedlings of Arabidopsis and other plant species
Jian-Feng
Li,
Eunsook
Park,
Albrecht
G
von Arnim,
Andreas
Nebenführ
Plant Methods 2009, 5 :6 (20 May 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology
105.
Frequency-dependent selection by wild birds promotes polymorphism in model salamanders
Benjamin
M
Fitzpatrick,
Kim
Shook,
Reuben
Izally
BMC Ecology 2009, 9 :12 (8 May 2009)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Birds attack salamander models with or without a stripe on their back with a frequency that depends on how common each type is, suggesting that predation may maintain variation in prey color and patterning.
106.
The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota
Iain
J
Anderson,
Lakshmi
Dharmarajan,
Jason
Rodriguez,
Sean
Hooper,
Iris
Porat,
Luke
E
Ulrich,
James
G
Elkins,
Kostas
Mavromatis,
Hui
Sun,
Miriam
Land,
Alla
Lapidus,
Susan
Lucas,
Kerrie
Barry,
Harald
Huber,
Igor
B
Zhulin,
William
B
Whitman,
Biswarup
Mukhopadhyay,
Carl
Woese,
James
Bristow,
Nikos
Kyrpides
BMC Genomics 2009, 10 :145 (2 April 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
107.
The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses
David
S
Hibbett,
P Brandon
Matheny
BMC Biology 2009, 7 :13 (10 March 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
The ancestor of Agaricomycete fungi that form ectomycorrhizal symbioses with woody plants was free living before forming several independent associations with gymnosperms as it is of more ancient origin than any of its potential hosts.
108.
A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation
Reza
Mobini,
Bengt
A
Andersson,
Jonas
Erjefält,
Mirjana
Hahn-Zoric,
Michael
A
Langston,
Andy
D
Perkins,
Lars
Cardell,
Mikael
Benson
BMC Systems Biology 2009, 3 :19 (12 February 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
A strategy of identifying modules of co-expressed and interacting genes in complex disorders can be used to discover novel disease genes, and has been used to demonstrate the important role of the gene IL7R in allergy.
109.
Reconstructing Generalized Logical Networks of Transcriptional Regulation in Mouse Brain from Temporal Gene Expression Data
Mingzhou(Joe)
Song,
Chris K
Lewis,
Eric R
Lance,
Elissa J
Chesler,
Roumyana Kirova
Yordanova,
Michael A
Langston,
Kerrie H
Lodowski,
Susan E
Bergeson
EURASIP Journal on Bioinformatics and Systems Biology 2009, 2009 :545176 (27 January 2009)
Abstract | Full text | PDF
110.
n3 and n6 polyunsaturated fatty acids differentially modulate prostaglandin E secretion but not markers of lipogenesis in adipocytes
Patrick
Wortman,
Yuko
Miyazaki,
Nishan
S
Kalupahana,
Suyeon
Kim,
Melissa
Hansen-Petrik,
Arnold
M
Saxton,
Kate
J
Claycombe,
Brynn
H
Voy,
Jay
Whelan,
Naima
Moustaid-Moussa
Nutrition & Metabolism 2009, 6 :5 (21 January 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
111.
Feeling manipulated: cytomegalovirus immune manipulation
Mindy
Miller-Kittrell,
Tim
E
Sparer
Virology Journal 2009, 6 :4 (9 January 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
112.
Local and regional factors influence the structure of treehole metacommunities
Christopher
J
Paradise,
Jarrod
D
Blue,
John
Q
Burkhart,
Justin
Goldberg,
Lauren
Harshaw,
Katherine
D
Hawkins,
Benjamin
Kegan,
Tyler
Krentz,
Leslie
Smith,
Shawn
Villalpando
BMC Ecology 2008, 8 :22 (19 December 2008)
Abstract | Full text | PDF | PubMed
113.
Effects of dairy intake on weight maintenance
Michael
B
Zemel,
Joseph
E
Donnelly,
Bryan
K
Smith,
Debra
K
Sullivan,
Joanna
Richards,
Danielle
Morgan-Hanusa,
Matthew
S
Mayo,
Xiaocun
Sun,
Galen
Cook-Wiens,
Bruce
W
Bailey,
Emily
L
Van Walleghen,
Richard
A
Washburn
Nutrition & Metabolism 2008, 5 :28 (24 October 2008)
Abstract | Full text | PDF | PubMed
114.
Mutational optimization of the coelenterazine-dependent luciferase from Renilla
Jongchan
Woo,
Albrecht
G
von Arnim
Plant Methods 2008, 4 :23 (30 September 2008)
Abstract | Full text | PDF | PubMed
115.
Efficacy of an ankle orthosis with a subtalar locking system in restricting ankle kinetics and kinematics in lateral cutting
Songning
Zhang,
Michael
Wortley,
Qingjian
Chen,
Julia
Freedman,
Casey
Riley
Journal of Foot and Ankle Research 2008, 1 (Suppl 1):O19 (26 September 2008)
Full text | PDF
116.
Phospholipase A2 regulation of bovine endometrial (BEND) cell prostaglandin production
James
D
Godkin,
Mary
P
Roberts,
Mona
Elgayyar,
Wei
Guan,
Patricia
K
Tithof
Reproductive Biology and Endocrinology 2008, 6 :44 (23 September 2008)
Abstract | Full text | PDF | PubMed
117.
Genome sequence of the Bacteroides fragilis phage ATCC 51477-B1
Shawn
A
Hawkins,
Alice
C
Layton,
Steven
Ripp,
Dan
Williams,
Gary
S
Sayler
Virology Journal 2008, 5 :97 (18 August 2008)
Abstract | Full text | PDF | PubMed
118.
Transcriptional responses of Arabidopsis thaliana plants to As (V) stress
Jason
M
Abercrombie,
Matthew
D
Halfhill,
Priya
Ranjan,
Murali
R
Rao,
Arnold
M
Saxton,
Joshua
S
Yuan,
C Neal
Stewart
BMC Plant Biology 2008, 8 :87 (6 August 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
119.
Statistical Analysis of Multipath Fading Channels Using Generalizations of Shot Noise
CharalambosD
Charalambous,
SeddikM
Djouadi,
Christos
Kourtellaris
EURASIP Journal on Wireless Communications and Networking 2008, 2008 :186020 (29 July 2008)
Abstract | Full text | PDF
120.
Using a literature-based NMF model for discovering gene functional relationships
Elina
Tjioe,
Michael
Berry,
Ramin
Homayouni,
Kevin
Heinrich
BMC Bioinformatics 2008, 9 (Suppl 7):P1 (8 July 2008)
Full text | PDF
121.
Differential transferrin expression in placentae from normal and abnormal pregnancies: a pilot study
Alena
Kralova,
Marta
Svetlikova,
Jindrich
Madar,
Zdena
Ulcova-Gallova,
Antonin
Bukovsky,
Jana
Peknicova
Reproductive Biology and Endocrinology 2008, 6 :27 (2 July 2008)
Abstract | Full text | PDF | PubMed
122.
Hybridization produces novelty when the mapping of form to function is many to one
Nicholas
F
Parnell,
C Darrin
Hulsey,
J Todd
Streelman
BMC Evolutionary Biology 2008, 8 :122 (28 April 2008)
Abstract | Full text | PDF | PubMed
123.
Neural Network Adaptive Control for Discrete-Time Nonlinear Nonnegative Dynamical Systems
WassimM
Haddad,
VijaySekhar
Chellaboina,
Qing
Hui,
Tomohisa
Hayakawa
Advances in Difference Equations 2008, 2008 :868425 (9 April 2008)
Abstract | Full text | PDF
124.
Asymptotic Analysis of Large Cooperative Relay Networks Using Random Matrix Theory
Husheng
Li,
Z
Han,
H
Poor
EURASIP Journal on Advances in Signal Processing 2008, 2008 :235867 (5 March 2008)
Abstract | Full text | PDF
125.
NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks
Erich
J
Baker,
Guan
N
Lin,
Huadong
Liu,
Ravi
Kosuri
Source Code for Biology and Medicine 2007, 2 :8 (26 November 2007)
Abstract | Full text | PDF | PubMed
126.
Home grocery delivery improves the household food environments of behavioral weight loss participants: Results of an 8-week pilot study
Amy
A
Gorin,
Hollie
A
Raynor,
Heather
M
Niemeier,
Rena
R
Wing
International Journal of Behavioral Nutrition and Physical Activity 2007, 4 :58 (14 November 2007)
Abstract | Full text | PDF | PubMed
127.
Statistical tools for transgene copy number estimation based on real-time PCR
Joshua
S
Yuan,
Jason
Burris,
Nathan
R
Stewart,
Ayalew
Mentewab,
C Neal
Stewart
BMC Bioinformatics 2007, 8 (Suppl 7):S6 (1 November 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
128.
Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework
Michael
A
Gilchrist,
Hong
Qin,
Russell
Zaretzki
BMC Bioinformatics 2007, 8 :403 (18 October 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
129.
Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site
Jessica
E
Butler,
Qiang
He,
Kelly
P
Nevin,
Zhili
He,
Jizhong
Zhou,
Derek
R
Lovley
BMC Genomics 2007, 8 :180 (19 June 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
130.
Distinct phospholipase A2 enzymes regulate prostaglandin E2 and F2alpha production by bovine endometrial epithelial cells
Patricia
K
Tithof,
Mary
P
Roberts,
Wei
Guan,
Mona
Elgayyar,
James
D
Godkin
Reproductive Biology and Endocrinology 2007, 5 :16 (25 April 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
131.
Risk factors of gastrointestinal nematode parasite infections in small ruminants kept in smallholder mixed farms in Kenya
Agricola
Odoi,
Joseph
M
Gathuma,
Charles
K
Gachuiri,
Amos
Omore
BMC Veterinary Research 2007, 3 :6 (20 April 2007)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
The grazing system and farmer education affect the success of deworming strategies against nematode infections in sheep and goats in Kenya.
132.
On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation
Byung-Hoon
Kim,
Xue
Cai,
Justin
N
Vaughn,
Albrecht
G
von Arnim
Genome Biology 2007, 8 :R60 (17 April 2007)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Reporter transgene assays and comparative polysome-microarray analysis reveal that the intact h subunit of Arabidopsis eIF3 contributes to efficient translation initiation on mRNA leader sequences harbouring multiple uORFs.
133.
A Reconfigurable FPGA System for Parallel Independent Component Analysis
Hongtao
Du,
Hairong
Qi
EURASIP Journal on Embedded Systems 2006, 2006 :023025 (19 November 2006)
Abstract | Full text | PDF
134.
RNA:protein ratio of the unicellular organism as a characteristic of phosphorous and nitrogen stoichiometry and of the cellular requirement of ribosomes for protein synthesis
Tatiana
V
Karpinets,
Duncan
J
Greenwood,
Carl
E
Sams,
John
T
Ammons
BMC Biology 2006, 4 :30 (5 September 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
The link between decreased ratios of RNA:protein and phosphorus:nitrogen and lower growth rates in microorganisms is explained by changes in protein synthesis efficiency, connecting the nutrient dynamics of complex ecosystems to cellular mechanisms.
135.
Protein expression of G-protein inwardly rectifying potassium channels (GIRK) in breast cancer cells
Madhu
S
Dhar,
Howard
K
Plummer
BMC Physiology 2006, 6 :8 (31 August 2006)
Abstract | Full text | PDF | PubMed
136.
Soluble fibrin inhibits monocyte adherence and cytotoxicity against tumor cells: implications for cancer metastasis
John
P
Biggerstaff,
Brandy
Weidow,
Jacqueline
Vidosh,
Judith
Dexheimer,
Shonak
Patel,
Pretesh
Patel
Thrombosis Journal 2006, 4 :12 (22 August 2006)
Abstract | Full text | PDF | PubMed |
137.
Enumeration of leukocyte infiltration in solid tumors by confocal laser scanning microscopy
J
Biggerstaff,
B
Weidow,
A
Amirkhosravi,
JL
Francis
BMC Immunology 2006, 7 :16 (21 July 2006)
Abstract | Full text | PDF | PubMed
138.
A statistical investigation of normal regional intra-subject heterogeneity of brain metabolism and perfusion by F-18 FDG and O-15 H2 O PET imaging
Ching-yee
Wong,
Joseph
Thie,
Marianne
Gaskill,
Richard
Ponto,
Jack
Hill,
Hai-yan
Tian,
Helena
Balon,
Dafang
Wu,
Darlene
Fink-Bennett,
Conrad
Nagle
BMC Nuclear Medicine 2006, 6 :4 (12 July 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
139.
Stochastic Power Control for Time-Varying Long-Term Fading Wireless Networks
Mohammed M
Olama,
Seddik M
Djouadi,
Charalambos D
Charalambous
EURASIP Journal on Advances in Signal Processing 2006, 2006 :089864 (29 June 2006)
Abstract | Full text | PDF
140.
A broadly applicable method to characterize large DNA viruses and adenoviruses based on the DNA polymerase gene
Larry
A
Hanson,
Mary
R
Rudis,
Marcia
Vasquez-Lee,
Roy
D
Montgomery
Virology Journal 2006, 3 :28 (11 April 2006)
Abstract | Full text | PDF | PubMed
141.
Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants
Xiaohan
Yang,
Brian
E
Scheffler,
Leslie
A
Weston
Plant Methods 2006, 2 :4 (1 March 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
142.
Statistical analysis of real-time PCR data
Joshua
S
Yuan,
Ann
Reed,
Feng
Chen,
C Neal
Stewart
BMC Bioinformatics 2006, 7 :85 (22 February 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
143.
Efficient gene-driven germ-line point mutagenesis of C57BL/6J mice
Edward
J
Michaud,
Cymbeline
T
Culiat,
Mitchell
L
Klebig,
Paul
E
Barker,
KT
Cain,
Debra
J
Carpenter,
Lori
L
Easter,
Carmen
M
Foster,
Alysyn
W
Gardner,
ZY
Guo,
Kay
J
Houser,
Lori
A
Hughes,
Marilyn
K
Kerley,
Zhaowei
Liu,
Robert
E
Olszewski,
Irina
Pinn,
Ginger
D
Shaw,
Sarah
G
Shinpock,
Ann
M
Wymore,
Eugene
M
Rinchik,
Dabney
K
Johnson
BMC Genomics 2005, 6 :164 (21 November 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
144.
Thermodynamic modeling, energy equipartition, and nonconservation of entropy for discrete-time dynamical systems
Wassim M
Haddad,
Qing
Hui,
Sergey G
Nersesov,
Vijaysekhar
Chellaboina
Advances in Difference Equations 2005, 2005 :248040 (27 September 2005)
Abstract | Full text | PDF
145.
Expression of G-protein inwardly rectifying potassium channels (GIRKs) in lung cancer cell lines
Howard
K
Plummer,
Madhu
S
Dhar,
Maria
Cekanova,
Hildegard
M
Schuller
BMC Cancer 2005, 5 :104 (18 August 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
146.
Can ovarian infertility be treated with bone marrow- or ovary-derived germ cells?
Antonin
Bukovsky
Reproductive Biology and Endocrinology 2005, 3 :36 (15 August 2005)
Abstract | Full text | PDF | PubMed
147.
Oogenesis in cultures derived from adult human ovaries
Antonin
Bukovsky,
Marta
Svetlikova,
Michael
R
Caudle
Reproductive Biology and Endocrinology 2005, 3 :17 (5 May 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central |
|
Editor’s summary
Culturing ovarian surface epithelial cells in the presence of an oestrogen-containing medium yields mature oocytes which are capable of being fertilised for use in fertility treatments and stem cell research.
148.
Expression of the α 7 nicotinic acetylcholine receptor in human lung cells
Howard
K
Plummer,
Madhu
Dhar,
Hildegard
M
Schuller
Respiratory Research 2005, 6 :29 (4 April 2005)
Abstract | Full text | PDF | PubMed
149.
Floral gene resources from basal angiosperms for comparative genomics research
Victor
A
Albert,
Douglas
E
Soltis,
John
E
Carlson,
William
G
Farmerie,
P Kerr
Wall,
Daniel
C
Ilut,
Teri
M
Solow,
Lukas
A
Mueller,
Lena
L
Landherr,
Yi
Hu,
Matyas
Buzgo,
Sangtae
Kim,
Mi-Jeong
Yoo,
Michael
W
Frohlich,
Rafael
Perl-Treves,
Scott
E
Schlarbaum,
Barbara
J
Bliss,
Xiaohong
Zhang,
Steven
D
Tanksley,
David
G
Oppenheimer,
Pamela
S
Soltis,
Hong
Ma,
Claude
W
dePamphilis,
James
H
Leebens-Mack
BMC Plant Biology 2005, 5 :5 (30 March 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Initial findings from the Floral Genome Project demonstrate the utility of basal angiosperm EST datasets for revealing the basic floral transcriptome and addressing evolutionary genomic areas of research.
150.
GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments
SA
Kirov,
X
Peng,
E
Baker,
D
Schmoyer,
B
Zhang,
J
Snoddy
BMC Bioinformatics 2005, 6 :72 (24 March 2005)
Abstract | Full text | PDF | PubMed