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51.

Research   Open Access

Dietary fat and not calcium supplementation or dairy product consumption is associated with changes in anthropometrics during a randomized, placebo-controlled energy-restriction trial

Jennifer T Smilowitz, Michelle M Wiest, Dorothy Teegarden, Michael B Zemel, J Bruce German, Marta D Van Loan Nutrition & Metabolism 2011, 8:67 (5 October 2011)

Abstract | Full text | PDF | PubMed

52.

Research   Open Access

Validity of estimating minute-by-minute energy expenditure of continuous walking bouts by accelerometry

Erin E Kuffel, Scott E Crouter, Jere D Haas, Edward A Frongillo, David R Bassett International Journal of Behavioral Nutrition and Physical Activity 2011, 8:92 (24 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

53.

Research article   Open Access

Neighborhood disparities in stroke and myocardial infarction mortality: a GIS and spatial scan statistics approach

Ashley Pedigo, Tim Aldrich, Agricola Odoi BMC Public Health 2011, 11:644 (12 August 2011)

Abstract | Full text | PDF | PubMed

54.

Meeting abstract   Open Access

Comparative studies of high-throughput biological graphs

Jonathan Reyles, Charles Phillips BMC Bioinformatics 2011, 12(Suppl 7):A12 (5 August 2011)

Full text | PDF

55.

Meeting abstract   Open Access

Determining anion-quadrupole interactions among protein, DNA, and ligand molecules

Jason B Harris, David D Jenkins, Jonathan Reyles, Stephanie Rickett, Jordan M Utley, Elizabeth E Howell, Jerome Baudry, Robert J Hinde BMC Bioinformatics 2011, 12(Suppl 7):A5 (5 August 2011)

Full text | PDF

56.

Methodology article   Open Access

A protocol for enumeration of aquatic viruses by epifluorescence microscopy using Anodisc™ 13 membranes

Charles R Budinoff, Star N Loar, Gary R LeCleir, Steven W Wilhelm, Alison Buchan BMC Microbiology 2011, 11:168 (25 July 2011)

Abstract | Full text | PDF | PubMed

57.

Research article   Open Access

ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra

Franziska Hinkelmann, Madison Brandon, Bonny Guang, Rustin McNeill, Grigoriy Blekherman, Alan Veliz-Cuba, Reinhard Laubenbacher BMC Bioinformatics 2011, 12:295 (20 July 2011)

Abstract | Full text | PDF | PubMed

58.

Research article   Open Access Highly Accessed

Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation

David GJ Mann, Zachary R King, Wusheng Liu, Blake L Joyce, Ryan J Percifield, Jennifer S Hawkins, Peter R LaFayette, Barbara J Artelt, Jason N Burris, Mitra Mazarei, Jeffrey L Bennetzen, Wayne A Parrott, Charles N Stewart BMC Biotechnology 2011, 11:74 (11 July 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

59.

Research   Open Access Highly Accessed

Developmental evolution of flowering plant pollen tube cell walls: callose synthase (CalS) gene expression patterns

Jason M Abercrombie, Brian C O'Meara, Andrew R Moffatt, Joseph H Williams EvoDevo 2011, 2:14 (1 July 2011)

Abstract | Full text | PDF | PubMed

60.

Research   Open Access

Allometric scaling of dietary linoleic acid on changes in tissue arachidonic acid using human equivalent diets in mice

Kylie A Weldon, Jay Whelan Nutrition & Metabolism 2011, 8:43 (24 June 2011)

Abstract | Full text | PDF | PubMed

61.

Research   Open Access

Increasing dietary linoleic acid does not increase tissue arachidonic acid content in adults consuming Western-type diets: a systematic review

Brian S Rett, Jay Whelan Nutrition & Metabolism 2011, 8:36 (10 June 2011)

Abstract | Full text | PDF | PubMed

62.

Research article   Open Access

SO2426 is a positive regulator of siderophore expression in Shewanella oneidensis MR-1

Kristene L Henne, Xiu-Feng Wan, Wei Wei, Dorothea K Thompson BMC Microbiology 2011, 11:125 (31 May 2011)

Abstract | Full text | PDF | PubMed

63.

Research article   Open Access Highly Accessed

The nuclear envelope localization of DYT1 dystonia torsinA-ΔE requires the SUN1 LINC complex component

Michael T Jungwirth, Dhivya Kumar, Danielle Y Jeong, Rose E Goodchild BMC Cell Biology 2011, 12:24 (31 May 2011)

Abstract | Full text | PDF | PubMed

64.

Nano Express   Open Access

A new heat propagation velocity prevails over Brownian particle velocities in determining the thermal conductivities of nanofluids

Kenneth D Kihm, Chan Chon, Joon Lee, Stephen US Choi Nanoscale Research Letters 2011, 6:361 (27 April 2011)

Abstract | Full text | PDF | PubMed

65.

Research article   Open Access

Population growth of Mexican free-tailed bats (Tadarida brasiliensis mexicana) predates human agricultural activity

Amy L Russell, Murray P Cox, Veronica A Brown, Gary F McCracken BMC Evolutionary Biology 2011, 11:88 (1 April 2011)

Abstract | Full text | PDF | PubMed

66.

Research article   Open Access

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1

Claribel Cruz-García, Alison E Murray, Jorge LM Rodrigues, Jeffrey A Gralnick, Lee McCue, Margaret F Romine, Frank E Löffler, James M Tiedje BMC Microbiology 2011, 11:64 (30 March 2011)

Abstract | Full text | PDF | PubMed

67.

Research Article   Open Access

Decentralized Turbo Bayesian Compressed Sensing with Application to UWB Systems

Depeng Yang, Husheng Li, Gregory D Peterson EURASIP Journal on Advances in Signal Processing 2011, 2011:817947 (15 March 2011)

Abstract | Full text | PDF

68.

Research article   Open Access

The spatial epidemiology and clinical features of reported cases of La Crosse Virus infection in West Virginia from 2003 to 2007

Andrew D Haddow, Danae Bixler, Agricola Odoi BMC Infectious Diseases 2011, 11:29 (26 January 2011)

Abstract | Full text | PDF | PubMed

69.

Research article   Open Access

Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice

Taryn P Stewart, Hyoung Kim, Arnold M Saxton, Jung Kim BMC Genomics 2010, 11:713 (19 December 2010)

Abstract | Full text | PDF | PubMed

70.

Software   Open Access Highly Accessed

T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms

Antonio Fernàndez-Guerra, Alison Buchan, Xiaozhen Mou, Emilio O Casamayor, José M González BMC Microbiology 2010, 10:262 (15 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

71.

Proceedings   Open Access

Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization)

Elina Tjioe, Michael W Berry, Ramin Homayouni BMC Bioinformatics 2010, 11(Suppl 6):S14 (7 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

72.

Research Article   Open Access

Feature-Based Image Comparison for Semantic Neighbor Selection in Resource-Constrained Visual Sensor Networks

Yang Bai, Hairong Qi EURASIP Journal on Image and Video Processing 2010, 2010:469563 (26 September 2010)

Abstract | Full text | PDF

73.

Research article   Open Access

Temporal diversification of Central American cichlids

C Darrin Hulsey, Phillip R Hollingsworth, James A Fordyce BMC Evolutionary Biology 2010, 10:279 (14 September 2010)

Abstract | Full text | PDF | PubMed

74.

Research article   Open Access Highly Accessed

Translation reinitiation and development are compromised in similar ways by mutations in translation initiation factor eIF3h and the ribosomal protein RPL24

Fujun Zhou, Bijoyita Roy, Albrecht G von Arnim BMC Plant Biology 2010, 10:193 (27 August 2010)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Mutations in the Arabidopsis translation initiation factor eIF3 and ribosomal protein RPL24 impair translation re-initiation of mRNAs containing a regulatory upstream-ORF in a similar manner leading to auxin-related development defects.

75.

Research   Open Access

Nanofibers and nanoparticles from the insect-capturing adhesive of the Sundew (Drosera) for cell attachment

Mingjun Zhang, Scott C Lenaghan, Lijin Xia, Lixin Dong, Wei He, William R Henson, Xudong Fan Journal of Nanobiotechnology 2010, 8:20 (18 August 2010)

Abstract | Full text | PDF | PubMed

76.

Poster presentation   Open Access

Development of tools for the automated analysis of spectra generated by tandem mass spectrometry

Sally Ellingson, Joe Hughes, Dylan Storey, Rick Weber, Nathan VerBerkmoes BMC Bioinformatics 2010, 11(Suppl 4):P27 (23 July 2010)

Full text | PDF

77.

Poster presentation   Open Access

Serendipitous discoveries in microarray analysis

Sally R Ellingson, Charles A Phillips, Randy Glenn, Douglas Swanson, Thomas Ha, Daniel Goldowitz, Michael A Langston BMC Bioinformatics 2010, 11(Suppl 4):P24 (23 July 2010)

Full text | PDF

78.

Poster presentation   Open Access

Graph algorithms for machine learning: a case-control study based on prostate cancer populations and high throughput transcriptomic data

Gary L Rogers, Pablo Moscato, Michael A Langston BMC Bioinformatics 2010, 11(Suppl 4):P21 (23 July 2010)

Full text | PDF

79.

Poster presentation   Open Access

Developing measures for microbial genome assembly quality control

Rachel M Adams, Jason B Harris, Jeremy J Jay, Beth G Johnson, Miriam L Land, Loren J Hauser BMC Bioinformatics 2010, 11(Suppl 4):P14 (23 July 2010)

Full text | PDF

80.

Poster presentation   Open Access

Comparative functional genomic study of substrate specificity evolution of the SABATH family of methyltransferases in plants

Nan Zhao, Jean-Luc Ferrer, Xiaofeng Zhuang, Feng Chen BMC Bioinformatics 2010, 11(Suppl 4):P7 (23 July 2010)

Full text | PDF

81.

Oral presentation   Open Access

Inferring gene coexpression networks for low dose ionizing radiation using graph theoretical algorithms and systems genetics

Sudhir Naswa, Gary L Rogers, Rachel M Lynch, Stephen A Kania, Suchita Das, Elissa J Chesler, Arnold M Saxton, Brynn H Voy, Michael A Langston BMC Bioinformatics 2010, 11(Suppl 4):O5 (23 July 2010)

Full text | PDF

82.

Research Article   Open Access

Resource Allocation with EGOS Constraint in Multicell OFDMA Communication Systems: Combating Intercell Interference

Husheng Li EURASIP Journal on Wireless Communications and Networking 2010, 2010:747102 (11 July 2010)

Abstract | Full text | PDF

83.

Nano Express   Open Access

Ultraviolet Extinction and Visible Transparency by Ivy Nanoparticles

Quanshui Li, Lijin Xia, Zhili Zhang, Mingjun Zhang Nanoscale Research Letters 2010, 5:1487-1491 (16 June 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

84.

Research   Open Access Highly Accessed

Naturally occurring nanoparticles from English ivy: an alternative to metal-based nanoparticles for UV protection

Lijin Xia, Scott C Lenaghan, Mingjun Zhang, Zhili Zhang, Quanshui Li Journal of Nanobiotechnology 2010, 8:12 (9 June 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

85.

Research Article   Open Access

Multiagent -Learning for Aloha-Like Spectrum Access in Cognitive Radio Systems

Husheng Li EURASIP Journal on Wireless Communications and Networking 2010, 2010:876216 (23 May 2010)

Abstract | Full text | PDF

86.

Research article   Open Access

Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge

Dorothea K Thompson, Karuna Chourey, Gene S Wickham, Stephanie B Thieman, Nathan C VerBerkmoes, Bing Zhang, Andrea T McCarthy, Matt A Rudisill, Manesh Shah, Robert L Hettich BMC Genomics 2010, 11:311 (19 May 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

87.

Research article   Open Access

Retention of low-fitness genotypes over six decades of admixture between native and introduced tiger salamanders

Jarrett R Johnson, Benjamin M Fitzpatrick, H Bradley Shaffer BMC Evolutionary Biology 2010, 10:147 (18 May 2010)

Abstract | Full text | PDF | PubMed

88.

Research   Open Access

A high-throughput transient gene expression system for switchgrass (Panicum virgatum L.) seedlings

Xinlu Chen, Raymie Equi, Holly Baxter, Kyle Berk, Jin Han, Sujata Agarwal, Janice Zale Biotechnology for Biofuels 2010, 3:9 (7 May 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

89.

Research article   Open Access Highly Accessed

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

Chongle Pan, Byung H Park, William H McDonald, Patricia A Carey, Jillian F Banfield, Nathan C VerBerkmoes, Robert L Hettich, Nagiza F Samatova BMC Bioinformatics 2010, 11:118 (5 March 2010)

Abstract | Full text | PDF | PubMed

90.

Methodology article   Open Access

Bias correction and Bayesian analysis of aggregate counts in SAGE libraries

Russell L Zaretzki, Michael A Gilchrist, William M Briggs, Artin Armagan BMC Bioinformatics 2010, 11:72 (3 February 2010)

Abstract | Full text | PDF | PubMed

91.

Nano Express   Open Access

Accurate Computation of Electric Field Enhancement Factors for Metallic Nanoparticles Using the Discrete Dipole Approximation

A DePrince, Robert J Hinde Nanoscale Research Letters 2010, 5:592-596 (29 January 2010)

Abstract | Full text | PDF | PubMed

92.

Short Report   Open Access

Comparison of threshold selection methods for microarray gene co-expression matrices

Bhavesh R Borate, Elissa J Chesler, Michael A Langston, Arnold M Saxton, Brynn H Voy BMC Research Notes 2009, 2:240 (2 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

93.

Research Article   Open Access

Securing Collaborative Spectrum Sensing against Untrustworthy Secondary Users in Cognitive Radio Networks

Wenkai Wang, Husheng Li, Yan(Lindsay) Sun, Zhu Han EURASIP Journal on Advances in Signal Processing 2010, 2010:695750 (22 November 2009)

Abstract | Full text | PDF

94.

Research article   Open Access

Genetic load and transgenic mitigating genes in transgenic Brassica rapa (field mustard) × Brassica napus (oilseed rape) hybrid populations

Christy W Rose, Reginald J Millwood, Hong S Moon, Murali R Rao, Matthew D Halfhill, Paul L Raymer, Suzanne I Warwick, Hani Al-Ahmad, Jonathan Gressel, C Neal Stewart BMC Biotechnology 2009, 9:93 (31 October 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Brassica rapa (weed) x Brassica napus (crop) transgenic hybrids are less fit than B. rapa in competitive conditions, with crop alleles acting as a negative genetic load opposing transgene introgression, while a mitigating transgene is soon lost from hybrids.

95.

Proceedings   Open Access Highly Accessed

Novel software package for cross-platform transcriptome analysis (CPTRA)

Xin Zhou, Zhen Su, R Douglas Sammons, Yanhui Peng, Patrick J Tranel, C Neal Stewart, Joshua S Yuan BMC Bioinformatics 2009, 10(Suppl 11):S16 (8 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

96.

Proceedings   Open Access

Threshold selection in gene co-expression networks using spectral graph theory techniques

Andy D Perkins, Michael A Langston BMC Bioinformatics 2009, 10(Suppl 11):S4 (8 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

97.

Proceedings   Open Access Highly Accessed

Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom

Zhanyou Xu, Dandan Zhang, Jun Hu, Xin Zhou, Xia Ye, Kristen L Reichel, Nathan R Stewart, Ryan D Syrenne, Xiaohan Yang, Peng Gao, Weibing Shi, Crissa Doeppke, Robert W Sykes, Jason N Burris, Joseph J Bozell, (Max) Zong-Ming Cheng, Douglas G Hayes, Nicole Labbe, Mark Davis, C Neal Stewart, Joshua S Yuan BMC Bioinformatics 2009, 10(Suppl 11):S3 (8 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

98.

Correspondence   Open Access

Bridging the gap between systems biology and medicine

Gilles Clermont, Charles Auffray, Yves Moreau, David M Rocke, Daniel Dalevi, Devdatt Dubhashi, Dana R Marshall, Peter Raasch, Frank Dehne, Paolo Provero, Jesper Tegner, Bruce J Aronow, Michael A Langston, Mikael Benson Genome Medicine 2009, 1:88 (29 September 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The translation of data generated by systems biology approaches into the clinic generates a series of unique questions and challenges, and should be driven by the collaboration of clinical, experimental, and computational scientists.

99.

Research article   Open Access

High-level chromate resistance in Arthrobacter sp. strain FB24 requires previously uncharacterized accessory genes

Kristene L Henne, Cindy H Nakatsu, Dorothea K Thompson, Allan E Konopka BMC Microbiology 2009, 9:199 (16 September 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

100.

Research Article   Open Access

Restless Watchdog: Selective Quickest Spectrum Sensing in Multichannel Cognitive Radio Systems

Husheng Li EURASIP Journal on Advances in Signal Processing 2009, 2009:417457 (1 September 2009)

Abstract | Full text | PDF

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