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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Tennessee Knoxville

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1.

Research article   Open Access

An orange fluorescent protein tagging system for real-time pollen tracking

J Rice, Reginald J Millwood, Richard E Mundell, Orlando D Chambers, Laura L Abercrombie, H Davies, C Stewart BMC Research Notes 2013, 6:383 (27 September 2013)

Abstract | Full text | PDF | PubMed

2.

Methodology   Open Access

The implementation research institute: training mental health implementation researchers in the United States

Enola K Proctor, John Landsverk, Ana A Baumann, Brian S Mittman, Gregory A Aarons, Ross C Brownson, Charles Glisson, David Chambers Implementation Science 2013, 8:105 (5 September 2013)

Abstract | Full text | PDF | PubMed

3.

Research article   Open Access Highly Accessed

Sensitivity of a real-time PCR method for the detection of transgenes in a mixture of transgenic and non-transgenic seeds of papaya (Carica papaya L.)

Madhugiri Nageswara-Rao, Charles Kwit, Sujata Agarwal, Mariah T Patton, Jordan A Skeen, Joshua S Yuan, Richard M Manshardt, C Stewart BMC Biotechnology 2013, 13:69 (1 September 2013)

Abstract | Full text | PDF | PubMed

4.

Study protocol   Open Access

A mixed methods multiple case study of implementation as usual in children’s social service organizations: study protocol

Byron J Powell, Enola K Proctor, Charles A Glisson, Patricia L Kohl, Ramesh Raghavan, Ross C Brownson, Bradley P Stoner, Christopher R Carpenter, Lawrence A Palinkas Implementation Science 2013, 8:92 (20 August 2013)

Abstract | Full text | PDF | PubMed

5.

Research   Open Access

Genetic characterization of Toxoplasma gondii from pigs from different localities in China by PCR-RFLP

Hai-Hai Jiang, Si-Yang Huang, Dong-Hui Zhou, Xiao-Xuan Zhang, Chunlei Su, Shun-Zhou Deng, Xing-Quan Zhu Parasites & Vectors 2013, 6:227 (7 August 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Using PCR-RFLP, two Toxoplasma gondii genotypes (ToxoDB PCR-RFLP genotypes #9 and #3) were revealed from pigs in Jiangxi, Sichuan, Guangdong provinces and Chongqing Municipality in China. ToxoDB #3 was first reported from pigs in China. Image: Representative PCR-RFLP genotyping profile.

6.

Research article   Open Access

Assessing the bioconfinement potential of a Nicotiana hybrid platform for use in plant molecular farming applications

J Rice, Richard E Mundell, Reginald J Millwood, Orlando D Chambers, C Stewart, H Davies BMC Biotechnology 2013, 13:63 (6 August 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

7.

Review   Open Access Highly Accessed

Health hazards of China’s lead-acid battery industry: a review of its market drivers, production processes, and health impacts

Tsering van der Kuijp, Lei Huang, Christopher R Cherry Environmental Health 2013, 12:61 (3 August 2013)

Abstract | Full text | PDF | PubMed

8.

Correction   Open Access Highly Accessed

Correction: potential therapeutic application of gold nanoparticles in B-chronic lymphocytic leukemia (BCLL): enhancing apoptosis

Priyabrata Mukherjee, Resham Bhattacharya, Nancy Bone, Yean K Lee, Chitta Patra, Shanfeng Wang, Lichun Lu, Charla Secreto, Pataki C Banerjee, Michael J Yaszemski, Neil E Kay, Debabrata Mukhopadhyay Journal of Nanobiotechnology 2013, 11:23 (1 July 2013)

Abstract | Full text | PDF | PubMed

9.

Methodology Article   Open Access

PoPLAR: Portal for Petascale Lifescience Applications and Research

Bhanu Rekapalli, Paul Giblock, Christopher Reardon BMC Bioinformatics 2013, 14(Suppl 9):S3 (28 June 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

10.

Research article   Open Access

A unique midgut-associated bacterial community hosted by the cave beetle Cansiliella servadeii (Coleoptera: Leptodirini) reveals parallel phylogenetic divergences from universal gut-specific ancestors

Maurizio G Paoletti, Luca Mazzon, Isabel Martinez-SaƱudo, Mauro Simonato, Mattia Beggio, Angelo Dreon, Alberto Pamio, Mauro Brilli, Luca Dorigo, Annette Summers Engel, Alessandra Tondello, Barbara Baldan, Giuseppe Concheri, Andrea Squartini BMC Microbiology 2013, 13:129 (10 June 2013)

Abstract | Full text | PDF | PubMed

11.

Research article   Open Access

Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κB signaling networks

Jaewook Joo, Steven J Plimpton, Jean-Loup Faulon BMC Systems Biology 2013, 7:45 (7 June 2013)

Abstract | Full text | PDF | PubMed

12.

Software   Open Access Highly Accessed

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena Deus, Brian Sidlauskas, Christian M Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger Vos, Campbell O Webb, Luke J Harmon, Megan Pirrung, Brian O'Meara, Matthew W Pennell, Siavash Mirarab, Michael S Rosenberg, James P Balhoff, Holly M Bik, Tracy A Heath, Peter E Midford, Joseph W Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E Alfaro, Aaron Steele, Greg Jordan BMC Bioinformatics 2013, 14:158 (13 May 2013)

Abstract | Full text | PDF | PubMed

13.

Review   Open Access

Advances in biotechnology and genomics of switchgrass

Madhugiri Nageswara-Rao, Jaya R Soneji, Charles Kwit, C Stewart Biotechnology for Biofuels 2013, 6:77 (12 May 2013)

Abstract | Full text | PDF | PubMed

14.

Research   Open Access

Structure and regulation of the cellulose degradome in Clostridium cellulolyticum

Chenggang Xu, Ranran Huang, Lin Teng, Dongmei Wang, Christopher L Hemme, Ilya Borovok, Qiang He, Raphael Lamed, Edward A Bayer, Jizhong Zhou, Jian Xu Biotechnology for Biofuels 2013, 6:73 (8 May 2013)

Abstract | Full text | PDF | PubMed

15.

Research article   Open Access

Odontogenic ameloblast-associated protein (ODAM) inhibits growth and migration of human melanoma cells and elicits PTEN elevation and inactivation of PI3K/AKT signaling

James S Foster, Lindsay M Fish, Jonathan E Phipps, Charles T Bruker, James M Lewis, John L Bell, Alan Solomon, Daniel P Kestler BMC Cancer 2013, 13:227 (7 May 2013)

Abstract | Full text | PDF | PubMed

16.

Research   Open Access

Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production

Hui Shen, Charleson R Poovaiah, Angela Ziebell, Timothy J Tschaplinski, Sivakumar Pattathil, Erica Gjersing, Nancy L Engle, Rui Katahira, Yunqiao Pu, Robert Sykes, Fang Chen, Arthur J Ragauskas, Jonathan R Mielenz, Michael G Hahn, Mark Davis, C Neal Stewart, Richard A Dixon Biotechnology for Biofuels 2013, 6:71 (7 May 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

17.

Review   Open Access Highly Accessed

Less is more: strategies to remove marker genes from transgenic plants

Yuan-Yeu Yau, C Neal Stewart BMC Biotechnology 2013, 13:36 (23 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Yuan-Yeu Yau and C Neal Stewart review existing strategies to remove selectable marker genes from transgenic plants, including site specific recombination systems, and explore emerging technologies for increased precision genome modification.

18.

Research   Open Access

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park

Mircea Podar, Kira S Makarova, David E Graham, Yuri I Wolf, Eugene V Koonin, Anna-Louise Reysenbach Biology Direct 2013, 8:9 (22 April 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The genome of the first terrestrial member of the Nanoarchaeota and comparisons with the marine Nanoarchaeum equitans reveals stages in the evolution of archaeal symbiosis and parasitism 

19.

Research   Open Access Highly Accessed

A monoclonal antibody against lymphocyte function-associated antigen-1 decreases HIV-1 replication by inducing the secretion of an antiviral soluble factor

Jenna Rychert, Lindsay Jones, Graham McGrath, Sue Bazner, Eric S Rosenberg Virology Journal 2013, 10:120 (18 April 2013)

Abstract | Full text | PDF | PubMed

20.

Research   Open Access Highly Accessed

Changes in the proteomic profiles of mouse brain after infection with cyst-forming Toxoplasma gondii

Dong-Hui Zhou, Fu-Rong Zhao, Si-Yang Huang, Min-Jun Xu, Hui-Qun Song, Chunlei Su, Xing-Quan Zhu Parasites & Vectors 2013, 6:96 (12 April 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This study compared the mouse brain proteomic profiles at 7 d, 14 d and 21 d after infection with cysts of T. gondii PRU strain by 2-DE coupled with MALDI-TOF MS. 56 protein spots were identified, representing 45 proteins. Image: Gene ontology (GO) categories of the identified mouse proteins.

21.

Research article   Open Access Highly Accessed

The influence of commercially-available carbohydrate and carbohydrate-protein supplements on endurance running performance in recreational athletes during a field trial

Adriana Coletta, Dixie L Thompson, Hollie A Raynor Journal of the International Society of Sports Nutrition 2013, 10:17 (28 March 2013)

Abstract | Full text | PDF | PubMed

22.

Research   Open Access

Characterization of physicochemical properties of ivy nanoparticles for cosmetic application

Yujian Huang, Scott C Lenaghan, Lijin Xia, Jason N Burris, C Neal Jr Stewart, Mingjun Zhang Journal of Nanobiotechnology 2013, 11:3 (1 February 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Naturally occurring nanoparticles found in English Ivy, Hedera helix, could confer UV protection with greater transparency and lower cytotoxicity than the metal oxides that are commonly used as sunscreen. 

23.

Research article   Open Access

Dynamics of domain coverage of the protein sequence universe

Bhanu Rekapalli, Kristin Wuichet, Gregory D Peterson, Igor B Zhulin BMC Genomics 2012, 13:634 (16 November 2012)

Abstract | Full text | PDF | PubMed

24.

Research   Open Access Highly Accessed

Mycobacterium avium subsp. paratuberculosis lipophilic antigen causes Crohn’s disease-type necrotizing colitis in Mice

Eiichi Momotani, Hiroshi Ozaki, Masatoshi Hori, Shizuo Yamamoto, Takashi Kuribayashi, Shigetoshi Eda, Masahiro Ikegami SpringerPlus 2012, 1:47 (8 November 2012)

Abstract | Full text | PDF

25.

Technical Note   Open Access

MetabR: an R script for linear model analysis of quantitative metabolomic data

Ben Ernest, Jessica R Gooding, Shawn R Campagna, Arnold M Saxton, Brynn H Voy BMC Research Notes 2012, 5:596 (30 October 2012)

Abstract | Full text | PDF | PubMed

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