1.
Maternal nutrient restriction in the ewe from early to midgestation programs reduced steroidogenic enzyme expression and tended to reduce progesterone content of corpora lutea, as well as circulating progesterone in nonpregnant aged female offspring
Nathan
M
Long,
Nuermaimaiti
Tuersunjiang,
Lindsey
A
George,
Caleb
O
Lemley,
Yan
Ma,
William
J
Murdoch,
Peter
W
Nathanielsz,
Stephen
P
Ford
Reproductive Biology and Endocrinology 2013, 11 :34 (8 May 2013)
Abstract | Full text | PDF | PubMed
2.
Nanobiotechnology can boost crop production and quality: first evidence from increased plant biomass, fruit yield and phytomedicine content in bitter melon (Momordica charantia )
Chittaranjan
Kole,
Phullara
Kole,
K Manoj
Randunu,
Poonam
Choudhary,
Ramakrishna
Podila,
Pu Chun
Ke,
Apparao
M
Rao,
Richard
K
Marcus
BMC Biotechnology 2013, 13 :37 (26 April 2013)
Abstract | Full text | PDF | PubMed
3.
Staff retention after the privatization of township-village health centers: a case study from the Haimen City of East China
Jiayan
Huang,
Lu
Shi,
Yingyao
Chen
BMC Health Services Research 2013, 13 :136 (12 April 2013)
Abstract | Full text | PDF | PubMed
4.
Qualitative developmental research among low income African American adults to inform a social marketing campaign for walking
Dawn
K
Wilson,
Sara
M
St George,
Nevelyn
N
Trumpeter,
Sandra
M
Coulon,
Sarah
F
Griffin,
Abe
Wandersman,
Melinda
Forthofer,
Barney
Gadson,
Porschia
V
Brown
International Journal of Behavioral Nutrition and Physical Activity 2013, 10 :33 (5 March 2013)
Abstract | Full text | PDF | PubMed
5.
Supramolecular glucose oxidase-SWNT conjugates formed by ultrasonication: effect of tube length, functionalization and processing time
Olukayode
Karunwi,
Anthony
Guiseppi-Elie
Journal of Nanobiotechnology 2013, 11 :6 (20 February 2013)
Abstract | Full text | PDF | PubMed
6.
Characterization of the basal angiosperm Aristolochia fimbriata : a potential experimental system for genetic studies
Barbara
J
Bliss,
Stefan
Wanke,
Abdelali
Barakat,
Saravanaraj
Ayyampalayam,
Norman
Wickett,
P Kerr
Wall,
Yuannian
Jiao,
Lena
Landherr,
Paula
E
Ralph,
Yi
Hu,
Christoph
Neinhuis,
Jim
Leebens-Mack,
Kathiravetpilla
Arumuganathan,
Sandra
W
Clifton,
Siela
N
Maximova,
Hong
Ma,
Claude
W
dePamphilis
BMC Plant Biology 2013, 13 :13 (24 January 2013)
Abstract | Full text | PDF | PubMed
7.
Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data
Shaolei
Teng,
Jack
Y
Yang,
Liangjiang
Wang
BMC Medical Genomics 2013, 6 (Suppl 1):S10 (23 January 2013)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
8.
Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling
Nicholas
Smith,
Brandon
Campbell,
Lin
Li,
Chuan
Li,
Emil
Alexov
BMC Structural Biology 2012, 12 :31 (5 December 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Protein Nano-Object Integrator (ProNOI) is a novel software tool for generating atomic-style nano shapes in conjunction with biological macromolecules, allowing users to manipulate shape, dimension and position, and charge objects with user-specified charge density.
9.
Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits
Frank
Feltus,
Joshua
P
Vandenbrink
Biotechnology for Biofuels 2012, 5 :80 (2 November 2012)
Abstract | Full text | PDF | PubMed
10.
Key factors influencing canine heartworm, Dirofilaria immitis , in the United States
Heidi
E
Brown,
Laura
C
Harrington,
Phillip
E
Kaufman,
Tanja
McKay,
Dwight
D
Bowman,
C
Nelson,
Dongmei
Wang,
Robert
Lund
Parasites & Vectors 2012, 5 :245 (30 October 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
An examination of the Companion Animal Parasite Council¿s (CAPC) canine heartworm data to clarify the spatial prevalence of heartworm in the United States. Factors thought to influence the spatial risk of disease, as identified in a recent CAPC workshop, are discussed. Image: Spatially smoothed proportions of positive canine heartworm-antigen tests recorded by US veterinarians in 2011.
11.
Prosthesis alignment affects axial rotation motion after total knee replacement: a prospective in vivo study combining computed tomography and fluoroscopic evaluations
Melinda
K
Harman,
Scott
A
Banks,
Stephan
Kirschner,
Jörg
Lützner
BMC Musculoskeletal Disorders 2012, 13 :206 (23 October 2012)
Abstract | Full text | PDF | PubMed
12.
Expansion of cardiac ischemia/reperfusion injury after instillation of three forms of multi-walled carbon nanotubes
Rakhee
N
Urankar,
Robert
M
Lust,
Erin
Mann,
Pranita
Katwa,
Xiaojia
Wang,
Ramakrishna
Podila,
Susana
C
Hilderbrand,
Benjamin
S
Harrison,
Pengyu
Chen,
Pu
Ke,
Apparao
M
Rao,
Jared
M
Brown,
Christopher
J
Wingard
Particle and Fibre Toxicology 2012, 9 :38 (16 October 2012)
Abstract | Full text | PDF | PubMed
13.
Enhanced DPPH radical scavenging activity and DNA protection effect of litchi pericarp extract by Aspergillus awamori bioconversion
Sen
Lin,
Bao
Yang,
Feng
Chen,
Guoxiang
Jiang,
Qing
Li,
Xuewu
Duan,
Yueming
Jiang
Chemistry Central Journal 2012, 6 :108 (27 September 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
14.
Genome wide identification of chilling responsive microRNAs in Prunus persica
Abdelali
Barakat,
Aditya
Sriram,
Joseph
Park,
Tetyana
Zhebentyayeva,
Dorrie
Main,
Albert
Abbott
BMC Genomics 2012, 13 :481 (15 September 2012)
Abstract | Full text | PDF | PubMed
15.
Simple and efficient methods to generate split roots and grafted plants useful for long-distance signaling studies in Medicago truncatula and other small plants
Tessema
K
Kassaw,
Julia
A
Frugoli
Plant Methods 2012, 8 :38 (12 September 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
The authors describe methods for efficiently making shoot-to-root grafts and for generating plants having roots of two different genotypes. These techniques, which are applicable to a variety of species, should prove valuable for studies aimed at dissecting long distance signalling pathways controlling plant development.
16.
Modeling cuttlefish behavioural chromatophore response
Zach
Zboch,
James
Peterson
BMC Neuroscience 2012, 13 (Suppl 1):P4 (16 July 2012)
Full text | PDF
17.
The roles of abiotic factors, dispersal, and species interactions in structuring stream assemblages of black flies (Diptera: Simuliidae)
John
W
McCreadie,
Peter
H
Adler
Aquatic Biosystems 2012, 8 :14 (28 June 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
The drivers of species assemblage at stream sites were found to include both biological and abiotic factors for black flies and their larvae, with results varying over spatial and temporal scales.
18.
Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters
Yuehua
Zhang,
Bo
Li,
Pradip
K
Srimani,
Xuewen
Chen,
Feng
Luo
Proteome Science 2012, 10 (Suppl 1):S4 (21 June 2012)
Abstract | Full text | PDF | PubMed
19.
Cytotoxic and potent CYP1 inhibitors from the marine algae Cymopolia barbata
Simone
Badal,
Winklet
Gallimore,
George
Huang,
Tzuen-Rong
Tzeng,
Rupika
Delgoda
Organic and Medicinal Chemistry Letters 2012, 2 :21 (11 June 2012)
Abstract | Full text | PDF | PubMed
|
Graphical abstract
20.
Molecular ecological network analyses
Ye
Deng,
Yi-Huei
Jiang,
Yunfeng
Yang,
Zhili
He,
Feng
Luo,
Jizhong
Zhou
BMC Bioinformatics 2012, 13 :113 (30 May 2012)
Abstract | Full text | PDF | PubMed
21.
DelPhi: a comprehensive suite for DelPhi software and associated resources
Lin
Li,
Chuan
Li,
Subhra
Sarkar,
Jie
Zhang,
Shawn
Witham,
Zhe
Zhang,
Lin
Wang,
Nicholas
Smith,
Marharyta
Petukh,
Emil
Alexov
BMC Biophysics 2012, 5 :9 (14 May 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
The DelPhi package is a comprehensive and user-friendly suite of tools for modelling electrostatic potentials in macromolecules using the Poisson-Boltzmann Equation, and is now enriched with additional features for greater usability.
22.
Construction of physical maps for the sex-specific regions of papaya sex chromosomes
Jong-Kuk
Na,
Jianping
Wang,
Jan
E
Murray,
Andrea
R
Gschwend,
Wenli
Zhang,
Qingyi
Yu,
Rafael
Pérez,
F
Feltus,
Cuixia
Chen,
Zdenek
Kubat,
Paul
H
Moore,
Jiming
Jiang,
Andrew
H
Paterson,
Ray
Ming
BMC Genomics 2012, 13 :176 (8 May 2012)
Abstract | Full text | PDF | PubMed
23.
Scheduling parity checks for increased throughput in early-termination, layered decoding of QC-LDPC codes on a stream processor
JaWone
A
Kennedy,
Daniel
L
Noneaker
EURASIP Journal on Wireless Communications and Networking 2012, 2012 :141 (12 April 2012)
Abstract | Full text | PDF
24.
Whole genome comparisons of Fragaria , Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
Sook
Jung,
Alessandro
Cestaro,
Michela
Troggio,
Dorrie
Main,
Ping
Zheng,
Ilhyung
Cho,
Kevin
M
Folta,
Bryon
Sosinski,
Albert
Abbott,
Jean-Marc
Celton,
Pere
Arús,
Vladimir
Shulaev,
Ignazio
Verde,
Michele
Morgante,
Daniel
Rokhsar,
Riccardo
Velasco,
Daniel
Sargent
BMC Genomics 2012, 13 :129 (4 April 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
25.
Chestnut resistance to the blight disease: insights from transcriptome analysis
Abdelali
Barakat,
Meg
Staton,
Chun-Huai
Cheng,
Joseph
Park,
Norzawani
Yassin,
Stephen
Ficklin,
Chia-Chun
Yeh,
Fred
Hebard,
Kathleen
Baier,
William
Powell,
Stephan
C
Schuster,
Nicholas
Wheeler,
Albert
Abbott,
John
E
Carlson,
Ronald
Sederoff
BMC Plant Biology 2012, 12 :38 (19 March 2012)
Abstract | Full text | PDF | PubMed
26.
Genomic signatures and gene networking: challenges and promises
Ke
Zhang,
Mehdi
Pirooznia,
Hamid
R
Arabnia,
Jack
Y
Yang,
Liangjiang
Wang,
Zuojie
Luo,
Youping
Deng
BMC Genomics 2011, 12 (Suppl 5):I1 (23 December 2011)
Abstract | Full text | PDF | PubMed
27.
Enhancing genome investigations in the mosquito Culex quinquefasciatus via BAC library construction and characterization
Paul
V
Hickner,
Becky
deBruyn,
Diane
D
Lovin,
Akio
Mori,
Christopher
A
Saski,
David
W
Severson
BMC Research Notes 2011, 4 :358 (13 September 2011)
Abstract | Full text | PDF | PubMed
28.
Multi-walled carbon nanotube instillation impairs pulmonary function in C57BL/6 mice
Xiaojia
Wang,
Pranita
Katwa,
Ramakrishna
Podila,
Pengyu
Chen,
Pu Chun
Ke,
Apparao
M
Rao,
Dianne
M
Walters,
Christopher
J
Wingard,
Jared
M
Brown
Particle and Fibre Toxicology 2011, 8 :24 (18 August 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central |
29.
A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6
Christopher
A
Saski,
Frank
A
Feltus,
Margaret
E
Staton,
Barbara
P
Blackmon,
Stephen
P
Ficklin,
David
N
Kuhn,
Raymond
J
Schnell,
Howard
Shapiro,
Juan
Motamayor
BMC Genomics 2011, 12 :413 (16 August 2011)
Abstract | Full text | PDF | PubMed
30.
Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes
Frank
A
Feltus,
Christopher
A
Saski,
Keithanne
Mockaitis,
Niina
Haiminen,
Laxmi
Parida,
Zachary
Smith,
James
Ford,
Margaret
E
Staton,
Stephen
P
Ficklin,
Barbara
P
Blackmon,
Chun-Huai
Cheng,
Raymond
J
Schnell,
David
N
Kuhn,
Juan-Carlos
Motamayor
BMC Genomics 2011, 12 :379 (27 July 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
31.
New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits
Christopher
A
Saski,
Zhigang
Li,
Frank
A
Feltus,
Hong
Luo
BMC Genomics 2011, 12 :369 (18 July 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
32.
Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks
Elena
S
Dimitrova,
Indranil
Mitra,
Abdul
Jarrah
EURASIP Journal on Bioinformatics and Systems Biology 2011, 2011 :1 (6 June 2011)
Abstract | Full text | PDF | PubMed
33.
A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure
Andrea
Zuccolo,
John
E
Bowers,
James
C
Estill,
Zhiyong
Xiong,
Meizhong
Luo,
Aswathy
Sebastian,
José
Goicoechea,
Kristi
Collura,
Yeisoo
Yu,
Yuannian
Jiao,
Jill
Duarte,
Haibao
Tang,
Saravanaraj
Ayyampalayam,
Steve
Rounsley,
Dave
Kudrna,
Andrew
H
Paterson,
J
Pires,
Andre
Chanderbali,
Douglas
E
Soltis,
Srikar
Chamala,
Brad
Barbazuk,
Pamela
S
Soltis,
Victor
A
Albert,
Hong
Ma,
Dina
Mandoli,
Jody
Banks,
John
E
Carlson,
Jeffrey
Tomkins,
Claude
W
dePamphilis,
Rod
A
Wing,
Jim
Leebens-Mack
et al.
Genome Biology 2011, 12 :R48 (27 May 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Mapping an outlier helps reconstruct the polyploidy timeline in angiosperms
34.
BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)
Daniela
Schulte,
Ruvini
Ariyadasa,
Bujun
Shi,
Delphine
Fleury,
Chris
Saski,
Michael
Atkins,
Pieter
deJong,
Cheng-Cang
Wu,
Andreas
Graner,
Peter
Langridge,
Nils
Stein
BMC Genomics 2011, 12 :247 (19 May 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
35.
Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions
Bo
Li,
Weiguo
Cao,
Jizhong
Zhou,
Feng
Luo
BMC Systems Biology 2011, 5 :73 (17 May 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
36.
Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
Niina
Haiminen,
F
Feltus,
Laxmi
Parida
BMC Genomics 2011, 12 :194 (15 April 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
37.
Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series
Matthew
W
Blair,
Natalia
Hurtado,
Carolina
M
Chavarro,
Monica
C
Muñoz-Torres,
Martha
C
Giraldo,
Fabio
Pedraza,
Jeff
Tomkins,
Rod
Wing
BMC Plant Biology 2011, 11 :50 (22 March 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
38.
Predicting siRNA potency with random forests and support vector machines
Liangjiang
Wang,
Caiyan
Huang,
Jack
Y
Yang
BMC Genomics 2010, 11 (Suppl 3):S2 (1 December 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
39.
Genomic tools development for Aquilegia : construction of a BAC-based physical map
Guang-Chen
Fang,
Barbara
P
Blackmon,
David
C
Henry,
Margaret
E
Staton,
Christopher
A
Saski,
Scott
A
Hodges,
Jeff
P
Tomkins,
Hong
Luo
BMC Genomics 2010, 11 :621 (8 November 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
40.
Microarray data integration for genome-wide analysis of human tissue-selective gene expression
Liangjiang
Wang,
Anand
K
Srivastava,
Charles
E
Schwartz
BMC Genomics 2010, 11 (Suppl 2):S15 (2 November 2010)
Abstract | Full text | PDF | PubMed
41.
Sequence feature-based prediction of protein stability changes upon amino acid substitutions
Shaolei
Teng,
Anand
K
Srivastava,
Liangjiang
Wang
BMC Genomics 2010, 11 (Suppl 2):S5 (2 November 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
42.
Inhibition of allogeneic inflammatory responses by the Ribonucleotide Reductase Inhibitors, Didox and Trimidox
Mohammed
S
Inayat,
Ismail
S
El-Amouri,
Mohammad
Bani-Ahmad,
Howard
L
Elford,
Vincent
S
Gallicchio,
Oliver
R
Oakley
Journal of Inflammation 2010, 7 :43 (18 August 2010)
Abstract | Full text | PDF | PubMed
43.
Understanding molecular recognition and epitope prediction from Information Theoretic approach
Indranil
Mitra,
Yan
Cui
BMC Bioinformatics 2010, 11 (Suppl 4):P22 (23 July 2010)
Full text | PDF
44.
Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny
Sook
Jung,
Ilhyung
Cho,
Bryon
Sosinski,
Albert
Abbott,
Dorrie
Main
BMC Research Notes 2010, 3 :168 (16 June 2010)
Abstract | Full text | PDF | PubMed
45.
BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features
Liangjiang
Wang,
Caiyan
Huang,
Mary
Yang,
Jack
Y
Yang
BMC Systems Biology 2010, 4 (Suppl 1):S3 (28 May 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
46.
Analysis of chick (Gallus gallus ) middle ear columella formation
Jamie
L
Wood,
Ami
J
Hughes,
Kathryn
J
Mercer,
Susan
C
Chapman
BMC Developmental Biology 2010, 10 :16 (16 February 2010)
Abstract | Full text | PDF | PubMed
47.
Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant
Sergio
Jiménez,
Zhigang
Li,
Gregory
L
Reighard,
Douglas
G
Bielenberg
BMC Plant Biology 2010, 10 :25 (9 February 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
48.
Effect of population stratification on the identification of significant single-nucleotide polymorphisms in genome-wide association studies
Sara
M
Sarasua,
Julianne
S
Collins,
Dhelia
M
Williamson,
Glen
A
Satten,
Andrew
S
Allen
BMC Proceedings 2009, 3 (Suppl 7):S13 (15 December 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
49.
Using process evaluation for program improvement in dose, fidelity and reach: the ACT trial experience
Dawn
K
Wilson,
Sarah
Griffin,
Ruth
P
Saunders,
Heather
Kitzman-Ulrich,
Duncan
C
Meyers,
Leslie
Mansard
International Journal of Behavioral Nutrition and Physical Activity 2009, 6 :79 (30 November 2009)
Abstract | Full text | PDF | PubMed
50.
Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex
Susanne
A
Thomson,
William
S
Baldwin,
Ying
H
Wang,
Gwijun
Kwon,
Gerald
A
LeBlanc
BMC Genomics 2009, 10 :500 (28 October 2009)
Abstract | Full text | PDF | PubMed