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1.

Research   Open Access

Maternal nutrient restriction in the ewe from early to midgestation programs reduced steroidogenic enzyme expression and tended to reduce progesterone content of corpora lutea, as well as circulating progesterone in nonpregnant aged female offspring

Nathan M Long, Nuermaimaiti Tuersunjiang, Lindsey A George, Caleb O Lemley, Yan Ma, William J Murdoch, Peter W Nathanielsz, Stephen P Ford Reproductive Biology and Endocrinology 2013, 11:34 (8 May 2013)

Abstract | Full text | PDF | PubMed

2.

Research article   Open Access

Nanobiotechnology can boost crop production and quality: first evidence from increased plant biomass, fruit yield and phytomedicine content in bitter melon (Momordica charantia)

Chittaranjan Kole, Phullara Kole, K Manoj Randunu, Poonam Choudhary, Ramakrishna Podila, Pu Chun Ke, Apparao M Rao, Richard K Marcus BMC Biotechnology 2013, 13:37 (26 April 2013)

Abstract | Full text | PDF | PubMed

3.

Research article   Open Access

Staff retention after the privatization of township-village health centers: a case study from the Haimen City of East China

Jiayan Huang, Lu Shi, Yingyao Chen BMC Health Services Research 2013, 13:136 (12 April 2013)

Abstract | Full text | PDF | PubMed

4.

Research   Open Access

Qualitative developmental research among low income African American adults to inform a social marketing campaign for walking

Dawn K Wilson, Sara M St George, Nevelyn N Trumpeter, Sandra M Coulon, Sarah F Griffin, Abe Wandersman, Melinda Forthofer, Barney Gadson, Porschia V Brown International Journal of Behavioral Nutrition and Physical Activity 2013, 10:33 (5 March 2013)

Abstract | Full text | PDF | PubMed

5.

Research   Open Access

Supramolecular glucose oxidase-SWNT conjugates formed by ultrasonication: effect of tube length, functionalization and processing time

Olukayode Karunwi, Anthony Guiseppi-Elie Journal of Nanobiotechnology 2013, 11:6 (20 February 2013)

Abstract | Full text | PDF | PubMed

6.

Research article   Open Access Highly Accessed

Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies

Barbara J Bliss, Stefan Wanke, Abdelali Barakat, Saravanaraj Ayyampalayam, Norman Wickett, P Kerr Wall, Yuannian Jiao, Lena Landherr, Paula E Ralph, Yi Hu, Christoph Neinhuis, Jim Leebens-Mack, Kathiravetpilla Arumuganathan, Sandra W Clifton, Siela N Maximova, Hong Ma, Claude W dePamphilis BMC Plant Biology 2013, 13:13 (24 January 2013)

Abstract | Full text | PDF | PubMed

7.

Research   Open Access

Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data

Shaolei Teng, Jack Y Yang, Liangjiang Wang BMC Medical Genomics 2013, 6(Suppl 1):S10 (23 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

8.

Software   Open Access Highly Accessed

Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling

Nicholas Smith, Brandon Campbell, Lin Li, Chuan Li, Emil Alexov BMC Structural Biology 2012, 12:31 (5 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Protein Nano-Object Integrator (ProNOI) is a novel software tool for generating atomic-style nano shapes in conjunction with biological macromolecules, allowing users to manipulate shape, dimension and position, and charge objects with user-specified charge density.

9.

Review   Open Access

Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits

Frank Feltus, Joshua P Vandenbrink Biotechnology for Biofuels 2012, 5:80 (2 November 2012)

Abstract | Full text | PDF | PubMed

10.

Meeting report   Open Access

Key factors influencing canine heartworm, Dirofilaria immitis, in the United States

Heidi E Brown, Laura C Harrington, Phillip E Kaufman, Tanja McKay, Dwight D Bowman, C Nelson, Dongmei Wang, Robert Lund Parasites & Vectors 2012, 5:245 (30 October 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

An examination of the Companion Animal Parasite Council¿s (CAPC) canine heartworm data to clarify the spatial prevalence of heartworm in the United States. Factors thought to influence the spatial risk of disease, as identified in a recent CAPC workshop, are discussed. Image: Spatially smoothed proportions of positive canine heartworm-antigen tests recorded by US veterinarians in 2011.

11.

Research article   Open Access

Prosthesis alignment affects axial rotation motion after total knee replacement: a prospective in vivo study combining computed tomography and fluoroscopic evaluations

Melinda K Harman, Scott A Banks, Stephan Kirschner, Jörg Lützner BMC Musculoskeletal Disorders 2012, 13:206 (23 October 2012)

Abstract | Full text | PDF | PubMed

12.

Research   Open Access

Expansion of cardiac ischemia/reperfusion injury after instillation of three forms of multi-walled carbon nanotubes

Rakhee N Urankar, Robert M Lust, Erin Mann, Pranita Katwa, Xiaojia Wang, Ramakrishna Podila, Susana C Hilderbrand, Benjamin S Harrison, Pengyu Chen, Pu Ke, Apparao M Rao, Jared M Brown, Christopher J Wingard Particle and Fibre Toxicology 2012, 9:38 (16 October 2012)

Abstract | Full text | PDF | PubMed

13.

Research article   Open Access

Enhanced DPPH radical scavenging activity and DNA protection effect of litchi pericarp extract by Aspergillus awamori bioconversion

Sen Lin, Bao Yang, Feng Chen, Guoxiang Jiang, Qing Li, Xuewu Duan, Yueming Jiang Chemistry Central Journal 2012, 6:108 (27 September 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

14.

Research article   Open Access Highly Accessed

Genome wide identification of chilling responsive microRNAs in Prunus persica

Abdelali Barakat, Aditya Sriram, Joseph Park, Tetyana Zhebentyayeva, Dorrie Main, Albert Abbott BMC Genomics 2012, 13:481 (15 September 2012)

Abstract | Full text | PDF | PubMed

15.

Methodology   Open Access

Simple and efficient methods to generate split roots and grafted plants useful for long-distance signaling studies in Medicago truncatula and other small plants

Tessema K Kassaw, Julia A Frugoli Plant Methods 2012, 8:38 (12 September 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The authors describe methods for efficiently making shoot-to-root grafts and for generating plants having roots of two different genotypes. These techniques, which are applicable to a variety of species, should prove valuable for studies aimed at dissecting long distance signalling pathways controlling plant development.

16.

Poster presentation   Open Access

Modeling cuttlefish behavioural chromatophore response

Zach Zboch, James Peterson BMC Neuroscience 2012, 13(Suppl 1):P4 (16 July 2012)

Full text | PDF

17.

Research   Open Access

The roles of abiotic factors, dispersal, and species interactions in structuring stream assemblages of black flies (Diptera: Simuliidae)

John W McCreadie, Peter H Adler Aquatic Biosystems 2012, 8:14 (28 June 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The drivers of species assemblage at stream sites were found to include both biological and abiotic factors for black flies and their larvae, with results varying over spatial and temporal scales.

18.

Proceedings   Open Access

Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters

Yuehua Zhang, Bo Li, Pradip K Srimani, Xuewen Chen, Feng Luo Proteome Science 2012, 10(Suppl 1):S4 (21 June 2012)

Abstract | Full text | PDF | PubMed

19.

Original article   Open Access

Cytotoxic and potent CYP1 inhibitors from the marine algae Cymopolia barbata

Simone Badal, Winklet Gallimore, George Huang, Tzuen-Rong Tzeng, Rupika Delgoda Organic and Medicinal Chemistry Letters 2012, 2:21 (11 June 2012)

Abstract | Full text | PDF | PubMed | Graphical abstract

20.

Methodology article   Open Access Highly Accessed

Molecular ecological network analyses

Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou BMC Bioinformatics 2012, 13:113 (30 May 2012)

Abstract | Full text | PDF | PubMed

21.

Software   Open Access Highly Accessed

DelPhi: a comprehensive suite for DelPhi software and associated resources

Lin Li, Chuan Li, Subhra Sarkar, Jie Zhang, Shawn Witham, Zhe Zhang, Lin Wang, Nicholas Smith, Marharyta Petukh, Emil Alexov BMC Biophysics 2012, 5:9 (14 May 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The DelPhi package is a comprehensive and user-friendly suite of tools for modelling electrostatic potentials in macromolecules using the Poisson-Boltzmann Equation, and is now enriched with additional features for greater usability.

22.

Research article   Open Access

Construction of physical maps for the sex-specific regions of papaya sex chromosomes

Jong-Kuk Na, Jianping Wang, Jan E Murray, Andrea R Gschwend, Wenli Zhang, Qingyi Yu, Rafael Pérez, F Feltus, Cuixia Chen, Zdenek Kubat, Paul H Moore, Jiming Jiang, Andrew H Paterson, Ray Ming BMC Genomics 2012, 13:176 (8 May 2012)

Abstract | Full text | PDF | PubMed

23.

Research   Open Access

Scheduling parity checks for increased throughput in early-termination, layered decoding of QC-LDPC codes on a stream processor

JaWone A Kennedy, Daniel L Noneaker EURASIP Journal on Wireless Communications and Networking 2012, 2012:141 (12 April 2012)

Abstract | Full text | PDF

24.

Research article   Open Access Highly Accessed

Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies

Sook Jung, Alessandro Cestaro, Michela Troggio, Dorrie Main, Ping Zheng, Ilhyung Cho, Kevin M Folta, Bryon Sosinski, Albert Abbott, Jean-Marc Celton, Pere Arús, Vladimir Shulaev, Ignazio Verde, Michele Morgante, Daniel Rokhsar, Riccardo Velasco, Daniel Sargent BMC Genomics 2012, 13:129 (4 April 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

25.

Research article   Open Access

Chestnut resistance to the blight disease: insights from transcriptome analysis

Abdelali Barakat, Meg Staton, Chun-Huai Cheng, Joseph Park, Norzawani Yassin, Stephen Ficklin, Chia-Chun Yeh, Fred Hebard, Kathleen Baier, William Powell, Stephan C Schuster, Nicholas Wheeler, Albert Abbott, John E Carlson, Ronald Sederoff BMC Plant Biology 2012, 12:38 (19 March 2012)

Abstract | Full text | PDF | PubMed

26.

Introduction   Open Access

Genomic signatures and gene networking: challenges and promises

Ke Zhang, Mehdi Pirooznia, Hamid R Arabnia, Jack Y Yang, Liangjiang Wang, Zuojie Luo, Youping Deng BMC Genomics 2011, 12(Suppl 5):I1 (23 December 2011)

Abstract | Full text | PDF | PubMed

27.

Short Report   Open Access

Enhancing genome investigations in the mosquito Culex quinquefasciatus via BAC library construction and characterization

Paul V Hickner, Becky deBruyn, Diane D Lovin, Akio Mori, Christopher A Saski, David W Severson BMC Research Notes 2011, 4:358 (13 September 2011)

Abstract | Full text | PDF | PubMed

28.

Research   Open Access

Multi-walled carbon nanotube instillation impairs pulmonary function in C57BL/6 mice

Xiaojia Wang, Pranita Katwa, Ramakrishna Podila, Pengyu Chen, Pu Chun Ke, Apparao M Rao, Dianne M Walters, Christopher J Wingard, Jared M Brown Particle and Fibre Toxicology 2011, 8:24 (18 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 2 comments

29.

Research article   Open Access

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6

Christopher A Saski, Frank A Feltus, Margaret E Staton, Barbara P Blackmon, Stephen P Ficklin, David N Kuhn, Raymond J Schnell, Howard Shapiro, Juan Motamayor BMC Genomics 2011, 12:413 (16 August 2011)

Abstract | Full text | PDF | PubMed

30.

Research article   Open Access

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

Frank A Feltus, Christopher A Saski, Keithanne Mockaitis, Niina Haiminen, Laxmi Parida, Zachary Smith, James Ford, Margaret E Staton, Stephen P Ficklin, Barbara P Blackmon, Chun-Huai Cheng, Raymond J Schnell, David N Kuhn, Juan-Carlos Motamayor BMC Genomics 2011, 12:379 (27 July 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

31.

Research article   Open Access

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits

Christopher A Saski, Zhigang Li, Frank A Feltus, Hong Luo BMC Genomics 2011, 12:369 (18 July 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

32.

Research   Open Access

Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks

Elena S Dimitrova, Indranil Mitra, Abdul Jarrah EURASIP Journal on Bioinformatics and Systems Biology 2011, 2011:1 (6 June 2011)

Abstract | Full text | PDF | PubMed

33.

Research   Open Access Highly Accessed

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

Andrea Zuccolo, John E Bowers, James C Estill, Zhiyong Xiong, Meizhong Luo, Aswathy Sebastian, José Goicoechea, Kristi Collura, Yeisoo Yu, Yuannian Jiao, Jill Duarte, Haibao Tang, Saravanaraj Ayyampalayam, Steve Rounsley, Dave Kudrna, Andrew H Paterson, J Pires, Andre Chanderbali, Douglas E Soltis, Srikar Chamala, Brad Barbazuk, Pamela S Soltis, Victor A Albert, Hong Ma, Dina Mandoli, Jody Banks, John E Carlson, Jeffrey Tomkins, Claude W dePamphilis, Rod A Wing, Jim Leebens-Mack et al. Genome Biology 2011, 12:R48 (27 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Mapping an outlier helps reconstruct the polyploidy timeline in angiosperms

34.

Research article   Open Access Highly Accessed

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)

Daniela Schulte, Ruvini Ariyadasa, Bujun Shi, Delphine Fleury, Chris Saski, Michael Atkins, Pieter deJong, Cheng-Cang Wu, Andreas Graner, Peter Langridge, Nils Stein BMC Genomics 2011, 12:247 (19 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

35.

Research article   Open Access

Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions

Bo Li, Weiguo Cao, Jizhong Zhou, Feng Luo BMC Systems Biology 2011, 5:73 (17 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

36.

Research article   Open Access Highly Accessed

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

Niina Haiminen, F Feltus, Laxmi Parida BMC Genomics 2011, 12:194 (15 April 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

37.

Research article   Open Access Highly Accessed

Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series

Matthew W Blair, Natalia Hurtado, Carolina M Chavarro, Monica C Muñoz-Torres, Martha C Giraldo, Fabio Pedraza, Jeff Tomkins, Rod Wing BMC Plant Biology 2011, 11:50 (22 March 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

38.

Research   Open Access

Predicting siRNA potency with random forests and support vector machines

Liangjiang Wang, Caiyan Huang, Jack Y Yang BMC Genomics 2010, 11(Suppl 3):S2 (1 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

39.

Research article   Open Access

Genomic tools development for Aquilegia: construction of a BAC-based physical map

Guang-Chen Fang, Barbara P Blackmon, David C Henry, Margaret E Staton, Christopher A Saski, Scott A Hodges, Jeff P Tomkins, Hong Luo BMC Genomics 2010, 11:621 (8 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

40.

Research   Open Access

Microarray data integration for genome-wide analysis of human tissue-selective gene expression

Liangjiang Wang, Anand K Srivastava, Charles E Schwartz BMC Genomics 2010, 11(Suppl 2):S15 (2 November 2010)

Abstract | Full text | PDF | PubMed

41.

Research   Open Access

Sequence feature-based prediction of protein stability changes upon amino acid substitutions

Shaolei Teng, Anand K Srivastava, Liangjiang Wang BMC Genomics 2010, 11(Suppl 2):S5 (2 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

42.

Research   Open Access

Inhibition of allogeneic inflammatory responses by the Ribonucleotide Reductase Inhibitors, Didox and Trimidox

Mohammed S Inayat, Ismail S El-Amouri, Mohammad Bani-Ahmad, Howard L Elford, Vincent S Gallicchio, Oliver R Oakley Journal of Inflammation 2010, 7:43 (18 August 2010)

Abstract | Full text | PDF | PubMed

43.

Poster presentation   Open Access

Understanding molecular recognition and epitope prediction from Information Theoretic approach

Indranil Mitra, Yan Cui BMC Bioinformatics 2010, 11(Suppl 4):P22 (23 July 2010)

Full text | PDF

44.

Research article   Open Access

Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny

Sook Jung, Ilhyung Cho, Bryon Sosinski, Albert Abbott, Dorrie Main BMC Research Notes 2010, 3:168 (16 June 2010)

Abstract | Full text | PDF | PubMed

45.

Research   Open Access

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features

Liangjiang Wang, Caiyan Huang, Mary Yang, Jack Y Yang BMC Systems Biology 2010, 4(Suppl 1):S3 (28 May 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

46.

Research article   Open Access

Analysis of chick (Gallus gallus) middle ear columella formation

Jamie L Wood, Ami J Hughes, Kathryn J Mercer, Susan C Chapman BMC Developmental Biology 2010, 10:16 (16 February 2010)

Abstract | Full text | PDF | PubMed

47.

Research article   Open Access

Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant

Sergio Jiménez, Zhigang Li, Gregory L Reighard, Douglas G Bielenberg BMC Plant Biology 2010, 10:25 (9 February 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

48.

Proceedings   Open Access

Effect of population stratification on the identification of significant single-nucleotide polymorphisms in genome-wide association studies

Sara M Sarasua, Julianne S Collins, Dhelia M Williamson, Glen A Satten, Andrew S Allen BMC Proceedings 2009, 3(Suppl 7):S13 (15 December 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

49.

Research   Open Access

Using process evaluation for program improvement in dose, fidelity and reach: the ACT trial experience

Dawn K Wilson, Sarah Griffin, Ruth P Saunders, Heather Kitzman-Ulrich, Duncan C Meyers, Leslie Mansard International Journal of Behavioral Nutrition and Physical Activity 2009, 6:79 (30 November 2009)

Abstract | Full text | PDF | PubMed

50.

Research article   Open Access

Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex

Susanne A Thomson, William S Baldwin, Ying H Wang, Gwijun Kwon, Gerald A LeBlanc BMC Genomics 2009, 10:500 (28 October 2009)

Abstract | Full text | PDF | PubMed

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