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1.

Methodology article   Open Access

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study

F Feltus, Stephen P Ficklin, Scott M Gibson, Melissa C Smith BMC Systems Biology 2013, 7:44 (5 June 2013)

Abstract | Full text | PDF | PubMed

2.

Research   Open Access Highly Accessed

Decreased tryptophan metabolism in patients with autism spectrum disorders

Luigi Boccuto, Chin-Fu Chen, Ayla R Pittman, Cindy D Skinner, Heather J McCartney, Kelly Jones, Barry R Bochner, Roger E Stevenson, Charles E Schwartz Molecular Autism 2013, 4:16 (3 June 2013)

Abstract | Full text | PDF | PubMed

3.

Research   Open Access

Maternal nutrient restriction in the ewe from early to midgestation programs reduced steroidogenic enzyme expression and tended to reduce progesterone content of corpora lutea, as well as circulating progesterone in nonpregnant aged female offspring

Nathan M Long, Nuermaimaiti Tuersunjiang, Lindsey A George, Caleb O Lemley, Yan Ma, William J Murdoch, Peter W Nathanielsz, Stephen P Ford Reproductive Biology and Endocrinology 2013, 11:34 (8 May 2013)

Abstract | Full text | PDF | PubMed

4.

Research article   Open Access Highly Accessed

Nanobiotechnology can boost crop production and quality: first evidence from increased plant biomass, fruit yield and phytomedicine content in bitter melon (Momordica charantia)

Chittaranjan Kole, Phullara Kole, K Manoj Randunu, Poonam Choudhary, Ramakrishna Podila, Pu Chun Ke, Apparao M Rao, Richard K Marcus BMC Biotechnology 2013, 13:37 (26 April 2013)

Abstract | Full text | PDF | PubMed

5.

Research article   Open Access

Staff retention after the privatization of township-village health centers: a case study from the Haimen City of East China

Jiayan Huang, Lu Shi, Yingyao Chen BMC Health Services Research 2013, 13:136 (12 April 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access

Qualitative developmental research among low income African American adults to inform a social marketing campaign for walking

Dawn K Wilson, Sara M St George, Nevelyn N Trumpeter, Sandra M Coulon, Sarah F Griffin, Abe Wandersman, Melinda Forthofer, Barney Gadson, Porschia V Brown International Journal of Behavioral Nutrition and Physical Activity 2013, 10:33 (5 March 2013)

Abstract | Full text | PDF | PubMed

7.

Research   Open Access

Supramolecular glucose oxidase-SWNT conjugates formed by ultrasonication: effect of tube length, functionalization and processing time

Olukayode Karunwi, Anthony Guiseppi-Elie Journal of Nanobiotechnology 2013, 11:6 (20 February 2013)

Abstract | Full text | PDF | PubMed

8.

Research article   Open Access Highly Accessed

Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies

Barbara J Bliss, Stefan Wanke, Abdelali Barakat, Saravanaraj Ayyampalayam, Norman Wickett, P Kerr Wall, Yuannian Jiao, Lena Landherr, Paula E Ralph, Yi Hu, Christoph Neinhuis, Jim Leebens-Mack, Kathiravetpilla Arumuganathan, Sandra W Clifton, Siela N Maximova, Hong Ma, Claude W dePamphilis BMC Plant Biology 2013, 13:13 (24 January 2013)

Abstract | Full text | PDF | PubMed

9.

Research   Open Access

Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data

Shaolei Teng, Jack Y Yang, Liangjiang Wang BMC Medical Genomics 2013, 6(Suppl 1):S10 (23 January 2013)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

10.

Software   Open Access Highly Accessed

Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling

Nicholas Smith, Brandon Campbell, Lin Li, Chuan Li, Emil Alexov BMC Structural Biology 2012, 12:31 (5 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Protein Nano-Object Integrator (ProNOI) is a novel software tool for generating atomic-style nano shapes in conjunction with biological macromolecules, allowing users to manipulate shape, dimension and position, and charge objects with user-specified charge density.

11.

Review   Open Access

Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits

Frank Feltus, Joshua P Vandenbrink Biotechnology for Biofuels 2012, 5:80 (2 November 2012)

Abstract | Full text | PDF | PubMed

12.

Meeting report   Open Access

Key factors influencing canine heartworm, Dirofilaria immitis, in the United States

Heidi E Brown, Laura C Harrington, Phillip E Kaufman, Tanja McKay, Dwight D Bowman, C Nelson, Dongmei Wang, Robert Lund Parasites & Vectors 2012, 5:245 (30 October 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

An examination of the Companion Animal Parasite Council¿s (CAPC) canine heartworm data to clarify the spatial prevalence of heartworm in the United States. Factors thought to influence the spatial risk of disease, as identified in a recent CAPC workshop, are discussed. Image: Spatially smoothed proportions of positive canine heartworm-antigen tests recorded by US veterinarians in 2011.

13.

Research article   Open Access

Prosthesis alignment affects axial rotation motion after total knee replacement: a prospective in vivo study combining computed tomography and fluoroscopic evaluations

Melinda K Harman, Scott A Banks, Stephan Kirschner, Jörg Lützner BMC Musculoskeletal Disorders 2012, 13:206 (23 October 2012)

Abstract | Full text | PDF | PubMed

14.

Research   Open Access

Expansion of cardiac ischemia/reperfusion injury after instillation of three forms of multi-walled carbon nanotubes

Rakhee N Urankar, Robert M Lust, Erin Mann, Pranita Katwa, Xiaojia Wang, Ramakrishna Podila, Susana C Hilderbrand, Benjamin S Harrison, Pengyu Chen, Pu Ke, Apparao M Rao, Jared M Brown, Christopher J Wingard Particle and Fibre Toxicology 2012, 9:38 (16 October 2012)

Abstract | Full text | PDF | PubMed

15.

Research article   Open Access

Enhanced DPPH radical scavenging activity and DNA protection effect of litchi pericarp extract by Aspergillus awamori bioconversion

Sen Lin, Bao Yang, Feng Chen, Guoxiang Jiang, Qing Li, Xuewu Duan, Yueming Jiang Chemistry Central Journal 2012, 6:108 (27 September 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

16.

Research article   Open Access Highly Accessed

Genome wide identification of chilling responsive microRNAs in Prunus persica

Abdelali Barakat, Aditya Sriram, Joseph Park, Tetyana Zhebentyayeva, Dorrie Main, Albert Abbott BMC Genomics 2012, 13:481 (15 September 2012)

Abstract | Full text | PDF | PubMed

17.

Methodology   Open Access

Simple and efficient methods to generate split roots and grafted plants useful for long-distance signaling studies in Medicago truncatula and other small plants

Tessema K Kassaw, Julia A Frugoli Plant Methods 2012, 8:38 (12 September 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The authors describe methods for efficiently making shoot-to-root grafts and for generating plants having roots of two different genotypes. These techniques, which are applicable to a variety of species, should prove valuable for studies aimed at dissecting long distance signalling pathways controlling plant development.

18.

Poster presentation   Open Access

Modeling cuttlefish behavioural chromatophore response

Zach Zboch, James Peterson BMC Neuroscience 2012, 13(Suppl 1):P4 (16 July 2012)

Full text | PDF

19.

Research   Open Access

The roles of abiotic factors, dispersal, and species interactions in structuring stream assemblages of black flies (Diptera: Simuliidae)

John W McCreadie, Peter H Adler Aquatic Biosystems 2012, 8:14 (28 June 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The drivers of species assemblage at stream sites were found to include both biological and abiotic factors for black flies and their larvae, with results varying over spatial and temporal scales.

20.

Proceedings   Open Access

Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters

Yuehua Zhang, Bo Li, Pradip K Srimani, Xuewen Chen, Feng Luo Proteome Science 2012, 10(Suppl 1):S4 (21 June 2012)

Abstract | Full text | PDF | PubMed

21.

Original article   Open Access

Cytotoxic and potent CYP1 inhibitors from the marine algae Cymopolia barbata

Simone Badal, Winklet Gallimore, George Huang, Tzuen-Rong Tzeng, Rupika Delgoda Organic and Medicinal Chemistry Letters 2012, 2:21 (11 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | Graphical abstract

22.

Methodology article   Open Access Highly Accessed

Molecular ecological network analyses

Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou BMC Bioinformatics 2012, 13:113 (30 May 2012)

Abstract | Full text | PDF | PubMed

23.

Software   Open Access Highly Accessed

DelPhi: a comprehensive suite for DelPhi software and associated resources

Lin Li, Chuan Li, Subhra Sarkar, Jie Zhang, Shawn Witham, Zhe Zhang, Lin Wang, Nicholas Smith, Marharyta Petukh, Emil Alexov BMC Biophysics 2012, 5:9 (14 May 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The DelPhi package is a comprehensive and user-friendly suite of tools for modelling electrostatic potentials in macromolecules using the Poisson-Boltzmann Equation, and is now enriched with additional features for greater usability.

24.

Research article   Open Access

Construction of physical maps for the sex-specific regions of papaya sex chromosomes

Jong-Kuk Na, Jianping Wang, Jan E Murray, Andrea R Gschwend, Wenli Zhang, Qingyi Yu, Rafael Pérez, F Feltus, Cuixia Chen, Zdenek Kubat, Paul H Moore, Jiming Jiang, Andrew H Paterson, Ray Ming BMC Genomics 2012, 13:176 (8 May 2012)

Abstract | Full text | PDF | PubMed

25.

Research   Open Access

Scheduling parity checks for increased throughput in early-termination, layered decoding of QC-LDPC codes on a stream processor

JaWone A Kennedy, Daniel L Noneaker EURASIP Journal on Wireless Communications and Networking 2012, 2012:141 (12 April 2012)

Abstract | Full text | PDF

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