401.
Thermal nociceptive properties of trigeminal afferent neurons in rats
Jason
M
Cuellar,
Neil
A
Manering,
Mikhail
Klukinov,
Michael
I
Nemenov,
David
C
Yeomans
Molecular Pain 2010, 6 :39 (7 July 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
402.
Concept-based query expansion for retrieving gene related publications from MEDLINE
Sérgio
Matos,
Joel
P
Arrais,
João
Maia-Rodrigues,
José
Oliveira
BMC Bioinformatics 2010, 11 :212 (28 April 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
403.
Short-term arginine deprivation results in large-scale modulation of hepatic gene expression in both normal and tumor cells: microarray bioinformatic analysis
Hwei
Leong,
Carl
Simkevich,
Anne
Lesieur-Brooks,
Bonnie
W
Lau,
Celine
Fugere,
Edmond
Sabo,
Nancy
L
Thompson
Nutrition & Metabolism 2006, 3 :37 (8 September 2006)
Abstract | Full text | PDF | PubMed
404.
Dengue-2 Structural Proteins Associate with Human Proteins to Produce a Coagulation and Innate Immune Response Biased Interactome
Brenda
B
Folly,
Almeriane
M
Weffort-Santos,
CG
Fathman,
Luis
RB
Soares
BMC Infectious Diseases 2011, 11 :34 (31 January 2011)
Abstract | Full text | PDF | PubMed
405.
Still a man's world, but why?
Ann
Weinacker,
Renee
D
Stapleton
Critical Care 2013, 17 :113 (29 January 2013)
Abstract | Full text | PDF | PubMed
406.
Modelling neuroinflammatory phenotypes in vivo
Marion
S
Buckwalter,
Tony
Wyss-Coray
Journal of Neuroinflammation 2004, 1 :10 (1 July 2004)
Abstract | Full text | PDF | PubMed
407.
Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common in Dehalococcoides
Paul
J
McMurdie,
Laura
A
Hug,
Elizabeth
A
Edwards,
Susan
Holmes,
Alfred
M
Spormann
BMC Genomics 2011, 12 :287 (2 June 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
408.
Can modern infrared analyzers replace gas chromatography to measure anesthetic vapor concentrations?
Jan
FA
Hendrickx,
Hendrikus
JM
Lemmens,
Rik
Carette,
Andre
M
De Wolf,
Lawrence
J
Saidman
BMC Anesthesiology 2008, 8 :2 (8 February 2008)
Abstract | Full text | PDF | PubMed
409.
Pitting of malaria parasites and spherocyte formation
Samuel
B
Anyona,
Stanley
L
Schrier,
Charity
W
Gichuki,
John
N
Waitumbi
Malaria Journal 2006, 5 :64 (31 July 2006)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A tantalizing hypothesis about the relationship between the pitting of malarial parasites and spherocyte formation during malarial infection. This hypothesis, based on in vitro studies, is supported by preliminary clinical findings and is novel inasmuch as it does not recognize a role for the spleen in the process.
410.
Mammalian cells lack checkpoints for tetraploidy, aberrant centrosome number, and cytokinesis failure
Connie
Wong,
Tim
Stearns
BMC Cell Biology 2005, 6 :6 (15 February 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology
411.
The role of economics in the QUERI program: QUERI Series
Mark
W
Smith,
Paul
G
Barnett
Implementation Science 2008, 3 :20 (22 April 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
412.
The courage to change: Patient perceptions of 12-Step fellowships
John-Kåre
Vederhus,
Christine
Timko,
Øistein
Kristensen,
Thomas
Clausen
BMC Health Services Research 2011, 11 :339 (15 December 2011)
Abstract | Full text | PDF | PubMed
413.
Type I interferon receptor controls B-cell expression of nucleic acid-sensing Toll-like receptors and autoantibody production in a murine model of lupus
Donna
L
Thibault,
Kareem
L
Graham,
Lowen
Y
Lee,
Imelda
Balboni,
Paul
J
Hertzog,
Paul
J
Utz
Arthritis Research & Therapy 2009, 11 :R112 (22 July 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
414.
Further validation that claims data are a useful tool for epidemiologic research on hypertension
Baylah
Tessier-Sherman,
Deron
Galusha,
Oyebode
A
Taiwo,
Linda
Cantley,
Martin
D
Slade,
Sharon
R
Kirsche,
Mark
R
Cullen
BMC Public Health 2013, 13 :51 (18 January 2013)
Abstract | Full text | PDF | PubMed
415.
Implementation of case management to reduce cardiovascular disease risk in the Stanford and San Mateo Heart to Heart randomized controlled trial: study protocol and baseline characteristics
Jun
Ma,
Ky-Van
Lee,
Kathy
Berra,
Randall
S
Stafford
Implementation Science 2006, 1 :21 (27 September 2006)
Abstract | Full text | PDF | PubMed
416.
Adherence and virologic suppression during the first 24 weeks on antiretroviral therapy among women in Johannesburg, South Africa - a prospective cohort study
Ziad
El-Khatib,
Anna
Ekstrom,
Ashraf
Coovadia,
Elaine
J
Abrams,
Max
Petzold,
David
Katzenstein,
Lynn
Morris,
Louise
Kuhn
BMC Public Health 2011, 11 :88 (8 February 2011)
Abstract | Full text | PDF | PubMed
417.
Improved analytical methods for microarray-based genome-composition analysis
Charles
C
Kim,
Elizabeth
A
Joyce,
Kaman
Chan,
Stanley
Falkow
Genome Biology 2002, 3 :research0065-research0065.17 (29 October 2002)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Genome-composition analysis using microarrays can be used to categorize genes into 'present' and 'divergent' categories. This involves selecting a signal value that is used as a cutoff to discriminate present and divergent genes, but this can result in the misclassification of many genes. A method is described that depends on the shape of the signal-ratio distribution and does not require empirical determination of a cutoff. Many genes previously classified as present using static methods are in fact divergent on the basis of microarray signal; this is corrected by our algorithm.
418.
Translational bioinformatics applications in genome medicine
Atul
J
Butte
Genome Medicine 2009, 1 :64 (29 June 2009)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Investigators empowered by bioinformatics need to take on the role of translational scientist by building the tools to ask the questions that will yield discoveries which will improve human health.
419.
The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics
Tara
A
Gianoulis,
Ashish
Agarwal,
Michael
Snyder,
Mark
B
Gerstein
Genome Biology 2011, 12 :R32 (31 March 2011)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Making connections between unrelated tabulated genomics datasets
420.
Enkephalin-encoding herpes simplex virus-1 decreases inflammation and hotplate sensitivity in a chronic pancreatitis model
Hong
Yang,
Terry
A
McNearney,
Rong
Chu,
Ying
Lu,
Yong
Ren,
David
C
Yeomans,
Steven
P
Wilson,
Karin
N
Westlund
Molecular Pain 2008, 4 :8 (28 February 2008)
Abstract | Full text | PDF | PubMed
421.
ENU mutagenesis reveals that Notchless homolog 1 (Drosophila ) affects Cdkn1a and several members of the Wnt pathway during murine pre-implantation development
Amy
C
Lossie,
Chiao-Ling
Lo,
Katherine
M
Baumgarner,
Melissa
J
Cramer,
Joseph
P
Garner,
Monica
J
Justice
BMC Genetics 2012, 13 :106 (12 December 2012)
Abstract | Full text | PDF | PubMed
422.
Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae
William
J
Jo,
Jeung Hyoun
Kim,
Eric
Oh,
Daniel
Jaramillo,
Patricia
Holman,
Alex
V
Loguinov,
Adam
P
Arkin,
Corey
Nislow,
Guri
Giaever,
Chris
D
Vulpe
BMC Genomics 2009, 10 :130 (25 March 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
In a yeast model of growth under iron-limited conditions, the role of genes for intracellular trafficking and the peroxisome is determined by combining deletion mutants and expression profiling, which reveal separate metabolic pathway components.
423.
Racial differences in cigarette brand recognition and impact on youth smoking
Amanda
L
Dauphinee,
Juliana
R
Doxey,
Nina
C
Schleicher,
Stephen
P
Fortmann,
Lisa
Henriksen
BMC Public Health 2013, 13 :170 (25 February 2013)
Abstract | Full text | PDF | PubMed
424.
Temporal trends in serum concentrations of polychlorinated dioxins, furans, and PCBs among adult women living in Chapaevsk, Russia: a longitudinal study from 2000 to 2009
Olivier
Humblet,
Oleg
Sergeyev,
Larisa
Altshul,
Susan
A
Korrick,
Paige
L
Williams,
Claude
Emond,
Linda
S
Birnbaum,
Jane
S
Burns,
Mary
M
Lee,
Boris
Revich,
Andrey
Shelepchikov,
Denis
Feshin,
Russ
Hauser
Environmental Health 2011, 10 :62 (22 June 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
425.
Resting-state fMRI as a biomarker for Alzheimer's disease?
Jessica
S
Damoiseaux
Alzheimer's Research & Therapy 2012, 4 :8 (15 March 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Damoiseaux comments on a recent review discussing resting-state functional magnetic resonance imaging (fMRI) in the study of Alzheimer's disease, considering key aspects surrounding its biomarker potential.
426.
Mutations of PIK3CA in gastric adenocarcinoma
Vivian
Li,
Chi
Wong,
Tsun
Chan,
Agnes
Chan,
Wei
Zhao,
Kent-Man
Chu,
Samuel
So,
Xin
Chen,
Siu
Yuen,
Suet
Leung
BMC Cancer 2005, 5 :29 (23 March 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
427.
Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4
William
M
Switzer,
Marco
Salemi,
Shoukat
H
Qari,
Hongwei
Jia,
Rebecca
R
Gray,
Aris
Katzourakis,
Susan
J
Marriott,
Kendle
N
Pryor,
Nathan
D
Wolfe,
Donald
S
Burke,
Thomas
M
Folks,
Walid
Heneine
Retrovirology 2009, 6 :9 (2 February 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
428.
Reversal of High dietary fructose-induced PPARα suppression by oral administration of lipoxygenase/cyclooxygenase inhibitors
Glen
L
Kelley,
Salman
Azhar
Nutrition & Metabolism 2005, 2 :18 (9 August 2005)
Abstract | Full text | PDF | PubMed
429.
Transcriptomic, proteomic and metabolomic analysis of UV-B signaling in maize
Paula
Casati,
Mabel
Campi,
Darren
J
Morrow,
John
F
Fernandes,
Virginia
Walbot
BMC Genomics 2011, 12 :321 (16 June 2011)
Abstract | Full text | PDF | PubMed
430.
Recent breast cancer trends among Asian/Pacific Islander, Hispanic, and African-American women in the US: changes by tumor subtype
Amelia
K
Hausauer,
Theresa
HM
Keegan,
Ellen
T
Chang,
Christina
A
Clarke
Breast Cancer Research 2007, 9 :R90 (27 December 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Multi-ethnic population-based trends provide further evidence that hormone therapy use has a major influence on rates of breast cancer subtypes and particularly on the number of estrogen-positive tumours.
431.
Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis
Nikki
Traylor-Knowles,
Brian
R
Granger,
Tristan
J
Lubinski,
Jignesh
R
Parikh,
Sara
Garamszegi,
Yu
Xia,
Jarrod
A
Marto,
Les
Kaufman,
John
R
Finnerty
BMC Genomics 2011, 12 :585 (29 November 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
432.
Worldwide patterns of haplotype diversity at 9p21.3, a locus associated with type 2 diabetes and coronary heart disease
Kaisa
Silander,
Hua
Tang,
Sean
Myles,
Eveliina
Jakkula,
Nicholas
J
Timpson,
Luigi
Cavalli-Sforza,
Leena
Peltonen
Genome Medicine 2009, 1 :51 (12 May 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
The protective allele for diabetes and the risk allele for coronary heart disease at the 9p21.3 locus have varying haplotype frequencies across 51 populations, implying very different population histories and highlighting the need to consider allelic background data for replication studies of genetic associations.
433.
Comparative profiling of the sense and antisense transcriptome of maize lines
Jiong
Ma,
Darren
J
Morrow,
John
Fernandes,
Virginia
Walbot
Genome Biology 2006, 7 :R22 (13 March 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Comparative transcriptome profiling of inbred maize lines demonstrates remarkable similarities and a large number of antisense transcripts.
434.
Temporal course of cerebrospinal fluid dynamics and amyloid accumulation in the aging rat brain from three to thirty months
Catherine
Chiu,
Miles
C
Miller,
Ilias
N
Caralopoulos,
Michael
S
Worden,
Thomas
Brinker,
Zachary
N
Gordon,
Conrad
E
Johanson,
Gerald
D
Silverberg
Fluids and Barriers of the CNS 2012, 9 :3 (23 January 2012)
Abstract | Full text | PDF | PubMed
435.
BioCreative III interactive task: an overview
Cecilia
N
Arighi,
Phoebe
M
Roberts,
Shashank
Agarwal,
Sanmitra
Bhattacharya,
Gianni
Cesareni,
Andrew
Chatr-aryamontri,
Simon
Clematide,
Pascale
Gaudet,
Michelle
Giglio,
Ian
Harrow,
Eva
Huala,
Martin
Krallinger,
Ulf
Leser,
Donghui
Li,
Feifan
Liu,
Zhiyong
Lu,
Lois
J
Maltais,
Naoaki
Okazaki,
Livia
Perfetto,
Fabio
Rinaldi,
Rune
Sætre,
David
Salgado,
Padmini
Srinivasan,
Philippe
E
Thomas,
Luca
Toldo,
Lynette
Hirschman,
Cathy
H
Wu
BMC Bioinformatics 2011, 12 (Suppl 8):S4 (3 October 2011)
Abstract | Full text | PDF | PubMed
436.
Ontology-driven indexing of public datasets for translational bioinformatics
Nigam
H
Shah,
Clement
Jonquet,
Annie
P
Chiang,
Atul
J
Butte,
Rong
Chen,
Mark
A
Musen
BMC Bioinformatics 2009, 10 (Suppl 2):S1 (5 February 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
437.
Improving bioinformatic pipelines for exome variant calling
Hanlee
P
Ji
Genome Medicine 2012, 4 :7 (30 January 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Hanlee Ji discusses the Atlas2 suite, a new set of tools for calling variants in exome sequencing data that is faster and easier to use than comparable tools and could thus be useful in diagnostics.
438.
Neuroprotective effects of compounds with antioxidant and anti-inflammatory properties in a Drosophila model of Parkinson's disease
Katharina
Faust,
Stephan
Gehrke,
Yufeng
Yang,
Lichuan
Yang,
M Flint
Beal,
Bingwei
Lu
BMC Neuroscience 2009, 10 :109 (1 September 2009)
Abstract | Full text | PDF | PubMed
439.
Inter-observer reproducibility of HER2 immunohistochemical assessment and concordance with fluorescent in situ hybridization (FISH): pathologist assessment compared to quantitative image analysis
Gulisa
Turashvili,
Samuel
Leung,
Dmitry
Turbin,
Kelli
Montgomery,
Blake
Gilks,
Rob
West,
Melinda
Carrier,
David
Huntsman,
Samuel
Aparicio
BMC Cancer 2009, 9 :165 (29 May 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
440.
Chronic morphine administration enhances nociceptive sensitivity and local cytokine production after incision
DeYong
Liang,
Xiaoyou
Shi,
Yanli
Qiao,
Martin
S
Angst,
David
C
Yeomans,
J
Clark
Molecular Pain 2008, 4 :7 (22 February 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
441.
An evaluation of the metabolic syndrome in a large multi-ethnic study: the Family Blood Pressure Program
Aldi
T
Kraja,
DC
Rao,
Alan
B
Weder,
Thomas
H
Mosley,
Stephen
T
Turner,
Chao
Hsiung,
Thomas
Quertermous,
Richard
Cooper,
J David
Curb,
Michael
A
Province
Nutrition & Metabolism 2005, 2 :17 (2 August 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
442.
Segmental lumbar mobility in individuals with low back pain: in vivo assessment during manual and self-imposed motion using dynamic MRI
Kornelia
Kulig,
Christopher
M
Powers,
Robert
F
Landel,
Hungwen
Chen,
Michael
Fredericson,
Marc
Guillet,
Kim
Butts
BMC Musculoskeletal Disorders 2007, 8 :8 (29 January 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central |
443.
Pharmacokinetics and pharmacodynamics of fenoldopam mesylate for blood pressure control in pediatric patients
Gregory
B
Hammer,
Susan
T
Verghese,
David
R
Drover,
Myron
Yaster,
Joseph
R
Tobin
BMC Anesthesiology 2008, 8 :6 (6 October 2008)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Fenoldopam mesylate is effective at lowering blood pressure in children during surgery only at higher doses than is currently licensed for in adults, and shows similar pharmacokinetics, pharmacodynamics and side effects to those seen in adults.
444.
How orthogonal are the OBO Foundry ontologies?
Amir
Ghazvinian,
Natalya
F
Noy,
Mark
A
Musen
Journal of Biomedical Semantics 2011, 2 (Suppl 2):S2 (17 May 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
445.
Characterizing multisegment foot kinematics during gait in diabetic foot patients
Zimi
Sawacha,
Giuseppe
Cristoferi,
Gabriella
Guarneri,
Stefano
Corazza,
Giulia
Donà,
Paolo
Denti,
Andrea
Facchinetti,
Angelo
Avogaro,
Claudio
Cobelli
Journal of NeuroEngineering and Rehabilitation 2009, 6 :37 (23 October 2009)
Abstract | Full text | PDF | PubMed
446.
Gene-expression patterns reveal underlying biological processes in Kawasaki disease
Stephen
J
Popper,
Chisato
Shimizu,
Hiroko
Shike,
John
T
Kanegaye,
Jane
W
Newburger,
Robert
P
Sundel,
Patrick
O
Brown,
Jane
C
Burns,
David
A
Relman
Genome Biology 2007, 8 :R261 (11 December 2007)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Analysis of patterns of gene expression in peripheral blood from children with Kawasaki disease revealed dynamic and variable gene expression programs involving neutrophil activation and apoptosis.
447.
Hearing effects from intermittent and continuous noise exposure in a study of Korean factory workers and firefighters
In-Sung
Chung,
Isabella
M
Chu,
Mark
R
Cullen
BMC Public Health 2012, 12 :87 (27 January 2012)
Abstract | Full text | PDF | PubMed
448.
Improved responsiveness and reduced sample size requirements of PROMIS physical function scales with item response theory
James
F
Fries,
Eswar
Krishnan,
Matthias
Rose,
Bharathi
Lingala,
Bonnie
Bruce
Arthritis Research & Therapy 2011, 13 :R147 (14 September 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
449.
Homeostatic capabilities of the choroid plexus epithelium in Alzheimer's disease
Conrad
Johanson,
Paul
McMillan,
Rosemarie
Tavares,
Anthony
Spangenberger,
John
Duncan,
Gerald
Silverberg,
Edward
Stopa
Cerebrospinal Fluid Research 2004, 1 :3 (10 December 2004)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
450.
Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function
Weidong
Tian,
Lan
V
Zhang,
Murat
Taşan,
Francis
D
Gibbons,
Oliver
D
King,
Julie
Park,
Zeba
Wunderlich,
J Michael
Cherry,
Frederick
P
Roth
Genome Biology 2008, 9 (Suppl 1):S7 (27 June 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central