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Work published with BioMed Central in the last 12 months by researchers at Stanford University

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1. Accesses 14006	Software Calling on a million minds for community annotation in WikiProteins Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, Melton W, Barris N, Wales J, Meijssen G, Moeller E, Roes PJ, Borner K, Bairoch A Genome Biology 2008, 9:R89 (28 May 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
2. Accesses 4398	Research article Quantum dot imaging for embryonic stem cells Lin S, Xie X, Patel MR, Yang YH, Li Z, Cao F, Gheysens O, Zhang Y, Gambhir SS, Rao JH, Wu JC BMC Biotechnology 2007, 7:67 (9 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
3. Accesses 4063	Open letter The ethics of characterizing difference: guiding principles on using racial categories in human genetics Lee SSJ, Mountain J, Koenig B, Altman R, Brown M, Camarillo A, Cavalli-Sforza L, Cho M, Eberhardt J, Feldman M, Ford R, Greely H, King R, Markus H, Satz D, Snipp M, Steele C, Underhill P Genome Biology 2008, 9:404 (15 July 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]
4. Accesses 3952	Research article *Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila* and is essential for starvation resistance Honegger B, Galic M, Köhler K, Wittwer F, Brogiolo W, Hafen E, Stocker H** Journal of Biology 2008, 7:10 (15 April 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
5. Accesses 3927	Research article Recent breast cancer trends among Asian/Pacific Islander, Hispanic, and African-American women in the US: changes by tumor subtype Hausauer AK, Keegan THM, Chang ET, Clarke CA Breast Cancer Research 2007, 9:R90 (27 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
6. Accesses 3447	Research Gene-expression patterns reveal underlying biological processes in Kawasaki disease Popper SJ, Shimizu C, Shike H, Kanegaye JT, Newburger JW, Sundel RP, Brown PO, Burns JC, Relman DA Genome Biology 2007, 8:R261 (11 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
7. Accesses 3350	Research *Characterization of heterotypic interaction effects in vitro* to deconvolute global gene expression profiles in cancer Buess M, Nuyten DSA, Hastie T, Nielsen T, Pesich R, Brown PO** Genome Biology 2007, 8:R191 (14 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
8. Accesses 3298	Review World Antimalarial Resistance Network (WARN) III: Molecular markers for drug resistant malaria Plowe CV, Roper C, Barnwell JW, Happi CT, Joshi HH, Mbacham W, Meshnick SR, Mugittu K, Naidoo I, Price RN, Shafer RW, Sibley CH, Sutherland CJ, Zimmerman PA, Rosenthal PJ Malaria Journal 2007, 6:121 (6 September 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
9. Accesses 3162	Method *CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo* gene prediction Gross SS, Do CB, Sirota M, Batzoglou S** Genome Biology 2007, 8:R269 (20 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
10. Accesses 3140	Method InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale Wang H, Segal E, Ben-Hur A, Li QR, Vidal M, Koller D Genome Biology 2007, 8:R192 (14 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
11. Accesses 2908	Methodology article Bacterial flora-typing with targeted, chip-based Pyrosequencing Sundquist A, Bigdeli S, Jalili R, Druzin ML, Waller S, Pullen KM, El-Sayed YY, Taslimi MM, Batzoglou S, Ronaghi M BMC Microbiology 2007, 7:108 (30 November 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
12. Accesses 2833	Review Multiplicity of cerebrospinal fluid functions: New challenges in health and disease Johanson CE, Duncan JA, Klinge PM, Brinker T, Stopa EG, Silverberg GD Cerebrospinal Fluid Research 2008, 5:10 (14 May 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
13. Accesses 2642	Research Diagnostic utility of B-type natriuretic peptide in critically ill patients with pulmonary edema: a prospective cohort study Levitt JE, Vinayak AG, Gehlbach BK, Pohlman A, Van Cleve W, Hall JB, Kress JP Critical Care 2008, 12:R3 (14 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
14. Accesses 2561	Research article Recent changes in breast cancer incidence and risk factor prevalence in San Francisco Bay area and California women: 1988 to 2004 Keegan THM, Chang ET, John EM, Horn-Ross PL, Wrensch MR, Glaser SL, Clarke CA Breast Cancer Research 2007, 9:R62 (25 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
15. Accesses 2544	Methodology article RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies Ribeiro-Silva A, Zhang H, Jeffrey SS BMC Molecular Biology 2007, 8:118 (21 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
16. Accesses 2469	Method Consistent dissection of the protein interaction network by combining global and local metrics Wang C, Ding C, Yang Q, Holbrook SR Genome Biology 2007, 8:R271 (21 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
17. Accesses 2429	Research article Glioma cells on the run the migratory transcriptome of 10 human glioma cell lines Demuth T, Rennert JL, Hoelzinger DB, Reavie LB, Nakada M, Beaudry C, Nakada S, Anderson EM, Henrichs AN, McDonough WS, Holz D, Joy A, Lin R, Pan KH, Lih CJ, Cohen SN, Berens ME BMC Genomics 2008, 9:54 (29 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
18. Accesses 2421	Research A sequence-based survey of the complex structural organization of tumor genomes Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC Genome Biology 2008, 9:R59 (25 March 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
19. Accesses 2318	Research article A non-circadian role for clock-genes in sleep homeostasis:a strain comparison Franken P, Thomason R, Heller HC, O'Hara BF BMC Neuroscience 2007, 8:87 (18 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
20. Accesses 2108	Research article A comprehensive analysis of common genetic variation in prolactin (PRL) and PRL receptor (PRLR) genes in relation to plasma prolactin levels and breast cancer risk: the Multiethnic Cohort Lee SA, Haiman CA, Burtt NP, Pooler LC, Cheng I, Kolonel LN, Pike MC, Altshuler D, Hirschhorn JN, Henderson BE, Stram DO BMC Medical Genetics 2007, 8:72 (1 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
21. Accesses 2082	Research article LIF promotes neurogenesis and maintains neural precursors in cell populations derived from spiral ganglion stem cells Oshima K, Teo DTW, Senn P, Starlinger V, Heller S BMC Developmental Biology 2007, 7:112 (12 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
22. Accesses 2056	Research article New models and online calculator for predicting non-sentinel lymph node status in sentinel lymph node positive breast cancer patients Kohrt HE, Olshen RA, Bermas HR, Goodson WH, Wood DJ, Henry S, Rouse RV, Bailey L, Philben VJ, Dirbas FM, Dunn JJ, Johnson DL, Wapnir IL, Carlson RW, Stockdale FE, Hansen NM, Jeffrey SS, The Bay Area SLN Study BMC Cancer 2008, 8:66 (4 March 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
23. Accesses 2034	Research Functional constraint and small insertions and deletions in the ENCODE regions of the human genome Clark TG, Andrew T, Cooper GM, Margulies EH, Mullikin JC, Balding DJ Genome Biology 2007, 8:R180 (4 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
24. Accesses 2009	Research article Intrinsic androgen-dependent gene expression patterns revealed by comparison of genital fibroblasts from normal males and individuals with complete and partial androgen insensitivity syndrome Holterhus PM, Deppe U, Werner R, Richter-Unruh A, Bebermeier JH, Wünsch L, Krege S, Schweikert HU, Demeter J, Riepe F, Hiort O, Brooks JD BMC Genomics 2007, 8:376 (18 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
25. Accesses 1996	Research Small interfering RNA targeting CDC25B inhibits liver tumor growth in vitro and in vivo Yan X, Chua MS, He J, So SK Molecular Cancer 2008, 7:19 (12 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
26. Accesses 1924	Research article A replica exchange Monte Carlo algorithm for protein folding in the HP model Thachuk C, Shmygelska A, Hoos HH BMC Bioinformatics 2007, 8:342 (17 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
27. Accesses 1846	Technical advance Can modern infrared analyzers replace gas chromatography to measure anesthetic vapor concentrations? Hendrickx JFA, Lemmens HJM, Carette R, De Wolf AM, Saidman LJ BMC Anesthesiology 2008, 8:2 (8 February 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
28. Accesses 1820	Research article A Marfan syndrome gene expression phenotype in cultured skin fibroblasts Yao Z, Jaeger JC, Ruzzo WL, Morale CZ, Emond M, Francke U, Milewicz DM, Schwartz SM, Mulvihill ER BMC Genomics 2007, 8:319 (12 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
29. Accesses 1763	Research article A study on the two binding sites of hexokinase on brain mitochondria Golestani A, Ramshini H, Nemat-Gorgani M BMC Biochemistry 2007, 8:20 (20 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
30. Accesses 1749	Research Chronic morphine administration enhances nociceptive sensitivity and local cytokine production after incision Liang DY, Shi X, Qiao Y, Angst MS, Yeomans DC, Clark JD Molecular Pain 2008, 4:7 (22 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
31. Accesses 1707	Research Morphine reduces local cytokine expression and neutrophil infiltration after incision Clark JD, Shi X, Li X, Qiao Y, Liang DY, Angst MS, Yeomans DC Molecular Pain 2007, 3:28 (2 October 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
32. Accesses 1609	Research Bioluminescence in vivo imaging of autoimmune encephalomyelitis predicts disease Luo J, Ho P, Steinman L, Wyss-Coray T Journal of Neuroinflammation 2008, 5:6 (1 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
33. Accesses 1589	Research Health-related quality of life and migration: A cross-sectional study on elderly Iranians in Sweden Koochek A, Montazeri A, Johansson SE, Sundquist J Health and Quality of Life Outcomes 2007, 5:60 (23 November 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
34. Accesses 1533	Software OntologyWidget a reusable, embeddable widget for easily locating ontology terms Beauheim CC, Wymore F, Nitzberg M, Zachariah ZK, Jin H, Skene JHP, Ball CA, Sherlock G BMC Bioinformatics 2007, 8:338 (13 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]
35. Accesses 1517	Research article M-BISON: Microarray-based integration of data sources using networks Daigle BJ, Altman RB BMC Bioinformatics 2008, 9:214 (25 April 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
36. Accesses 1495	Method The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation Wu S, Liang MP, Altman RB Genome Biology 2008, 9:R8 (16 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
37. Accesses 1476	Study protocol Breast MRI in nonpalpable breast lesions: a randomized trial with diagnostic and therapeutic outcome MONET study Peters NHGM, Borel Rinkes IHM, Mali WPTM, van den Bosch MAAJ, Storm RK, Plaisier PW, de Boer E, van Overbeeke AJ, Peeters PHM Trials 2007, 8:40 (28 November 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
38. Accesses 1467	Research Research priorities in pediatric rheumatology: The Childhood Arthritis and Rheumatology Research Alliance (CARRA) consensus Ota S, Cron RQ, Schanberg LE, O'Neil K, Mellins ED, Fuhlbrigge RC, Feldman BM Pediatric Rheumatology 2008, 6:5 (1 April 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
39. Accesses 1428	Research article What orthopaedic surgery residents need to know about the hand and wrist? Wadey VMR, Ladd A, Dev P, Walker D BMC Medical Education 2007, 7:33 (5 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
40. Accesses 1416	Research article Disparities in mammographic screening for Asian women in California: a cross-sectional analysis to identify meaningful groups for targeted intervention Gomez SL, Tan S, Keegan THM, Clarke CA BMC Cancer 2007, 7:201 (26 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
41. Accesses 1406	Research article Paternal genetic affinity between western Austronesians and Daic populations Li H, Wen B, Chen SJ, Su B, Pramoonjago P, Liu Y, Pan S, Qin Z, Liu W, Cheng X, Yang N, Li X, Tran D, Lu D, Hsu MT, Deka R, Marzuki S, Tan CC, Jin L BMC Evolutionary Biology 2008, 8:146 (15 May 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
42. Accesses 1394	Research Enkephalin-encoding herpes simplex virus-1 decreases inflammation and hotplate sensitivity in a chronic pancreatitis model Yang H, McNearney TA, Chu R, Lu Y, Ren Y, Yeomans DC, Wilson SP, Westlund KN Molecular Pain 2008, 4:8 (28 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
43. Accesses 1387	Research article MScanner: a classifier for retrieving Medline citations Poulter GL, Rubin DL, Altman RB, Seoighe C BMC Bioinformatics 2008, 9:108 (19 February 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
44. Accesses 1379	Original investigation Does the association of the triglyceride to high-density lipoprotein cholesterol ratio with fasting serum insulin differ by race/ethnicity? Li C, Ford ES, Meng YX, Mokdad AH, Reaven GM Cardiovascular Diabetology 2008, 7:4 (28 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
45. Accesses 1351	Research article Longitudinal, population-based study of racial/ethnic differences in colorectal cancer survival: impact of neighborhood socioeconomic status, treatment and comorbidity Gomez SL, O'Malley CD, Stroup A, Shema SJ, Satariano WA BMC Cancer 2007, 7:193 (16 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
46. Accesses 1228	Research Women's childhood and adult adverse experiences, mental health, and binge drinking: The California Women's Health Survey Timko C, Sutkowi A, Pavao J, Kimerling R Substance Abuse Treatment, Prevention, and Policy 2008, 3:15 (6 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
47. Accesses 1218	Research Quantitative characterization of myocardial infarction by cardiovascular magnetic resonance predicts future cardiovascular events in patients with ischemic cardiomyopathy Yokota H, Heidary S, Katikireddy CK, Nguyen P, Pauly JM, McConnell MV, Yang PC Journal of Cardiovascular Magnetic Resonance 2008, 10:17 (9 April 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
48. Accesses 1173	Research article Xenopus importin beta validates human importin beta as a cell cycle negative regulator Delmar VA, Chan RC, Forbes DJ BMC Cell Biology 2008, 9:14 (22 March 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
49. Accesses 1147	Commentary OMERACT: An international initiative to improve outcome measurement in rheumatology Tugwell P, Boers M, Brooks P, Simon L, Strand V, Idzerda L Trials 2007, 8:38 (26 November 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
50. Accesses 1122	Research article Structure-activity models of oral clearance, cytotoxicity, and LD50: a screen for promising anticancer compounds Boik JC, Newman RA BMC Pharmacology 2008, 8:12 (13 June 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
51. Accesses 1120	Methodology Fluorescence resonance energy transfer sensors for quantitative monitoring of pentose and disaccharide accumulation in bacteria Kaper T, Lager I, Looger LL, Chermak D, Frommer WB Biotechnology for Biofuels 2008, 1:11 (3 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
52. Accesses 1111	Correspondence Time esophageal pH < 4 overestimates the prevalence of pathologic esophageal reflux in subjects with gastroesophageal reflux disease treated with proton pump inhibitors Gerson LB, Triadafilopoulos G, Sahbaie P, Young W, Sloan S, Robinson M, Miner PB, Gardner JD BMC Gastroenterology 2008, 8:15 (23 May 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
53. Accesses 1107	Research article Changes in the gastric enteric nervous system and muscle: A case report on two patients with diabetic gastroparesis Pasricha PJ, Pehlivanov ND, Gomez G, Vittal H, Lurken MS, Farrugia G BMC Gastroenterology 2008, 8:21 (30 May 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
54. Accesses 1095	Research article Preimplantation expression of the somatic form of Dnmt1 suggests a role in the inheritance of genomic imprints Cirio MC, Ratnam S, Ding F, Reinhart B, Navara C, Chaillet JR BMC Developmental Biology 2008, 8:9 (25 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
55. Accesses 1021	Research Superoxide dismutase A antigens derived from molecular analysis of sarcoidosis granulomas elicit systemic Th-1 immune responses Allen SS, Evans W, Carlisle J, Hajizadeh R, Nadaf M, Shepherd BE, Pride DT, Johnson JE, Drake WP Respiratory Research 2008, 9:36 (25 April 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
56. Accesses 1004	Research article Sample matching by inferred agonal stress in gene expression analyses of the brain Li JZ, Meng F, Tsavaler L, Evans SJ, Choudary PV, Tomita H, Vawter MP, Walsh D, Shokoohi V, Chung T, Bunney WE, Jones EG, Akil H, Watson SJ, Myers RM BMC Genomics 2007, 8:336 (24 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
57. Accesses 970	Research article Slow GABA_Amediated synaptic transmission in rat visual cortex Sceniak MP, MacIver MB BMC Neuroscience 2008, 9:8 (16 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
58. Accesses 932	Research article *SNP discovery and molecular evolution in Anopheles gambiae, with special emphasis on innate immune system* Cohuet A, Krishnakumar S, Simard F, Morlais I, Koutsos A, Fontenille D, Mindrinos M, Kafatos FC BMC Genomics 2008, 9:227 (19 May 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
59. Accesses 924	Research article Cooling via one hand improves physical performance in heat-sensitive individuals with Multiple Sclerosis: A preliminary study Grahn DA, Murray JLS, Heller HC BMC Neurology 2008, 8:14 (12 May 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
60. Accesses 914	Research article *MyoD- and nerve-dependent maintenance of MyoD* expression in mature muscle fibres acts through the DRR/PRR element Chargé SB, Brack AS, Bayol SA, Hughes SM** BMC Developmental Biology 2008, 8:5 (23 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
61. Accesses 901	Research article *Dominant negative Bmp5* mutation reveals key role of BMPs in skeletal response to mechanical stimulation Ho AM, Marker PC, Peng H, Quintero AJ, Kingsley DM, Huard J** BMC Developmental Biology 2008, 8:35 (1 April 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
62. Accesses 853	Research article The type III neurofilament peripherin is expressed in the tuberomammillary neurons of the mouse Eriksson KS, Zhang S, Lin L, Larivière RC, Julien JP, Mignot E BMC Neuroscience 2008, 9:26 (24 February 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
63. Accesses 837	Research article Genetic analysis of posterior medial barrel subfield (PMBSF) size in somatosensory cortex (SI) in recombinant inbred strains of mice Jan TA, Lu L, Li CX, Williams RW, Waters RS BMC Neuroscience 2008, 9:3 (7 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
64. Accesses 823	Software The XBabelPhish MAGE-ML and XML Translator Maier D, Wymore F, Sherlock G, Ball CA BMC Bioinformatics 2008, 9:28 (18 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
65. Accesses 811	Research article Constitutive Expressor of Pathogenesis-Related Genes5 affects cell wall biogenesis and trichome development Brininstool G, Kasili R, Simmons LA, Kirik V, Hülskamp M, Larkin JC BMC Plant Biology 2008, 8:58 (16 May 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
66. Accesses 798	Research article MBL2 and Hepat