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BMC  Supporter member - Stanford University

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Work published with BioMed Central in the last 12 months by researchers at Stanford University


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Commentary    
Translational bioinformatics applications in genome medicine
Butte AJ
Genome Med 2009, 1:64 (29 June 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Investigations of fine-scale phylogeography in Tigriopus californicus reveal historical patterns of population divergence
Willett CS, Ladner JT
BMC Evolutionary Biology 2009, 9:139 (23 June 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
The complete genome of klassevirus a novel picornavirus in pediatric stool
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL
Virology Journal 2009, 6:82 (18 June 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research    
Monte Carlo dose verification of prostate patients treated with simultaneous integrated boost intensity modulated radiation therapy
Dogan N, Mihaylov I, Wu Y, Keall PJ, Siebers JV, Hagan MP
Radiation Oncology 2009, 4:18 (15 June 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research    
Molecular genetic analysis of FGFR1 signalling reveals distinct roles of MAPK and PLC1 activation for self-renewal of adult neural stem cells
Ma DK, Ponnusamy K, Song MR, Ming G, Song H
Molecular Brain 2009, 2:16 (8 June 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont
Sunagawa S, Wilson EC, Thaler M, Smith ML, Caruso C, Pringle JR, Weis VM, Medina M, Schwarz JA
BMC Genomics 2009, 10:258 (5 June 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
Metabolic-network-driven analysis of bacterial ecological strategies
Freilich S, Kreimer A, Borenstein E, Yosef N, Sharan R, Gophna U, Ruppin E
Genome Biology 2009, 10:R61 (5 June 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
118 SNPs of folate-related genes and risks of spina bifida and conotruncal heart defects
Shaw GM, Lu W, Zhu H, Yang W, Briggs FBS, Carmichael SL, Barcellos LF, Lammer EJ, Finnell RH
BMC Medical Genetics 2009, 10:49 (3 June 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Inter-observer reproducibility of HER2 immunohistochemical assessment and concordance with fluorescent in situ hybridization (FISH): pathologist assessment compared to quantitative image analysis
Turashvili G, Leung S, Turbin D, Montgomery K, Gilks B, West R, Carrier M, Huntsman D, Aparicio S
BMC Cancer 2009, 9:165 (29 May 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
Low levels of amyloid-beta and its transporters in neonatal rats with and without hydrocephalus
Deren KE, Forsyth J, Abdullah O, Hsu EW, Klinge PM, Silverberg GD, Johanson CE, McAllister JP
Cerebrospinal Fluid Research 2009, 6:4 (26 May 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Blood autoantibody and cytokine profiles predict response to anti-tumor necrosis factor therapy in rheumatoid arthritis
Hueber W, Tomooka BH, Batliwalla F, Li W, Monach PA, Tibshirani RJ, Van Vollenhoven RF, Lampa J, Saito K, Tanaka Y, Genovese MC, Klareskog L, Gregersen PK, Robinson WH
Arthritis Research & Therapy 2009, 11:R76 (21 May 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
Effects of a popular exercise and weight loss program on weight loss, body composition, energy expenditure and health in obese women
Kerksick C, Thomas A, Campbell B, Taylor L, Wilborn C, Marcello B, Roberts M, Pfau E, Grimstvedt M, Opusunju J, Magrans-Courtney T, Rasmussen C, Wilson R, Kreider RB
Nutrition & Metabolism 2009, 6:23 (14 May 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Correspondence    
Worldwide patterns of haplotype diversity at 9p21.3, a locus associated with type 2 diabetes and coronary heart disease
Silander K, Tang H, Myles S, Jakkula E, Timpson NJ, Cavalli-Sforza L, Peltonen L
Genome Med 2009, 1:51 (12 May 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Study protocol    
Randomised controlled trial of a secondary prevention program for myocardial infarction patients ('ProActive Heart'): study protocol
Hawkes AL, Atherton J, Taylor CB, Scuffham P, Eadie K, Miller NH, Oldenburg B
BMC Cardiovascular Disorders 2009, 9:16 (9 May 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [1 comment]

Research article    
Colocalization of connexin 36 and corticotropin-releasing hormone in the mouse brain
Westberg L, Sawa E, Wang AY, Gunaydin LA, Ribeiro AC, Pfaff DW
BMC Neuroscience 2009, 10:41 (30 April 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Oncologist use of the Adjuvant! model for risk communication: a pilot study examining patient knowledge of 10-year prognosis
Belkora JK, Rugo HS, Moore DH, Hutton DW, Chen DF, Esserman LJ
BMC Cancer 2009, 9:127 (28 April 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Review    
All-you-can-eat: autophagy in neurodegeneration and neuroprotection
Jaeger PA, Wyss-Coray T
Molecular Neurodegeneration 2009, 4:16 (6 April 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research    
Kit ligand promotes first polar body extrusion of mouse preovulatory oocytes
Ye Y, Kawamura K, Sasaki M, Kawamura N, Groenen P, Gelpke MDS, Rauch R, Hsueh AJW, Tanaka T
Reproductive Biology and Endocrinology 2009, 7:26 (3 April 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Review    
Mental health issues in unaccompanied refugee minors
Huemer J, Karnik NS, Voelkl-Kernstock S, Granditsch E, Dervic K, Friedrich MH, Steiner H
Child and Adolescent Psychiatry and Mental Health 2009, 3:13 (2 April 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae
Jo WJ, Kim JH, Oh E, Jaramillo D, Holman P, Loguinov AV, Arkin AP, Nislow C, Giaever G, Vulpe CD
BMC Genomics 2009, 10:130 (25 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Methodology    
Measuring the activity of BioBrick promoters using an in vivo reference standard
Kelly JR, Rubin AJ, Davis JH, Ajo-Franklin CM, Cumbers J, Czar MJ, de Mora K, Glieberman AL, Monie DD, Endy D
Journal of Biological Engineering 2009, 3:4 (20 March 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Methodology article    
Digital PCR provides sensitive and absolute calibration for high throughput sequencing
White RA, Blainey PC, Fan HC, Quake SR
BMC Genomics 2009, 10:116 (19 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
A compact VEGF signature associated with distant metastases and poor outcomes
Hu Z, Fan C, Livasy C, He X, Oh DS, Ewend MG, Carey LA, Subramanian S, West R, Ikpatt F, Olopade OI, van de Rijn M, Perou CM
BMC Medicine 2009, 7:9 (16 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Study protocol    
A model to optimize public health care and downstage breast cancer in limited-resource populations in southern Brazil. (Porto Alegre Breast Health Intervention Cohort)
Caleffi M, Ribeiro RA, Filho DLD, Ashton-Prolla P, Bedin AJ, Skonieski GP, Zignani JM, Giacomazzi J, Franco LR, Graudenz M, Pohlmann P, Fernandes JG, Kivitz P, Weber B
BMC Public Health 2009, 9:83 (13 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Poster presentation    
Strain-specific and pathogen-specific physiologic and genomic differences in murine inflammatory cardiac dysfunction
Ackland G, Agrawal R, Hou C, Patterson A
Critical Care 2009, 13(Suppl 1):P370 (13 March 2009)
[Full text] [PDF]

Research article    
Smoking, drinking and body weight after re-employment: does unemployment experience and compensation make a difference?
Bolton KL, Rodriguez E
BMC Public Health 2009, 9:77 (6 March 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Short Report    
Rapid intracerebroventricular delivery of Cu-DOTA-etanercept after peripheral administration demonstrated by PET imaging
Tobinick EL, Chen K, Chen X
BMC Research Notes 2009, 2:28 (27 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Genetic correction of splice site mutation in purified and enriched myoblasts isolated from mdx5cv mice
Maguire K, Suzuki T, DiMatteo D, Parekh-Olmedo H, Kmiec E
BMC Molecular Biology 2009, 10:15 (23 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Review    
Programmed cell death in host-symbiont associations, viewed through the Gene Ontology
Chibucos MC, Collmer CW, Torto-Alalibo T, Gwinn-Giglio M, Lindeberg M, Li D, Tyler BM
BMC Microbiology 2009, 9(Suppl 1):S5 (19 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Methodology article    
Short hairpin RNA-mediated knockdown of protein expression in Entamoeba histolytica
Linford AS, Moreno H, Good KR, Zhang H, Singh U, Petri WA
BMC Microbiology 2009, 9:38 (17 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
Micro-geographic risk factors for malarial infection
Myers WP, Myers AP, Cox-Singh J, Lau HC, Mokuai B, Malley R
Malaria Journal 2009, 8:27 (13 February 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Introduction    
Selected proceedings of the First Summit on Translational Bioinformatics 2008
Butte AJ, Sarkar IN, Ramoni M, Lussier Y, Troyanskaya O
BMC Bioinformatics 2009, 10(Suppl 2):I1 (5 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Proceedings    
Ontology-driven indexing of public datasets for translational bioinformatics
Shah NH, Jonquet C, Chiang AP, Butte AJ, Chen R, Musen MA
BMC Bioinformatics 2009, 10(Suppl 2):S1 (5 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Proceedings    
The "etiome": identification and clustering of human disease etiological factors
Liu YI, Wise PH, Butte AJ
BMC Bioinformatics 2009, 10(Suppl 2):S14 (5 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Proceedings    
Computational neuroanatomy: ontology-based representation of neural components and connectivity
Rubin DL, Talos IF, Halle M, Musen MA, Kikinis R
BMC Bioinformatics 2009, 10(Suppl 2):S3 (5 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Proceedings    
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text
Garten Y, Altman RB
BMC Bioinformatics 2009, 10(Suppl 2):S6 (5 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Case Report    
Complete remission of primary plasma cell leukemia with bortezomib, doxorubicin, and dexamethasone: a case report
Chan SM, George T, Cherry AM, Medeiros BC
Cases Journal 2009, 2:121 (4 February 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Oral presentation    
Clearance of amyloid-beta in experimental neonatal hydrocephalus
Kelly KD, Forsyth J, Klinge P, Silverberg G, Johanson C, McAllister JP
Cerebrospinal Fluid Research 2009, 6(Suppl 1):S26 (3 February 2009)
[Abstract] [Full text] [PDF]

Research    
Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4
Switzer WM, Salemi M, Qari SH, Jia H, Gray RR, Katzourakis A, Marriott SJ, Pryor KN, Wolfe ND, Burke DS, Folks TM, Heneine W
Retrovirology 2009, 6:9 (2 February 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Protein domain organisation: adding order
Kummerfeld SK, Teichmann SA
BMC Bioinformatics 2009, 10:39 (29 January 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Oral presentation    
Cardiac magnetic resonance of targeted annexin-iron oxide labeling detects cardiac cell death in vivo after doxorubicin and myocardial infarction
Dash R, Chan T, Yamada M, Paningbatan M, Myagmar BE, Swigart P, Simpson PC, Yang PC
Journal of Cardiovascular Magnetic Resonance 2009, 11(Suppl 1):O8 (28 January 2009)
[Abstract] [Full text] [PDF]

Oral presentation    
Feasibility of noninvasive 3 T MRI-guided myocardial ablation with high intensity focused ultrasound
Swaminathan A, Rieke V, King RL, Pauly J, Butts-Pauly K, McConnell M
Journal of Cardiovascular Magnetic Resonance 2009, 11(Suppl 1):O86 (28 January 2009)
[Abstract] [Full text] [PDF]

Poster presentation    
7 T MRI of macrophages in mouse carotid atherosclerosis using novel nanoparticle platforms
Kosuge H, Terashima M, Uchida M, Sherlock S, Tsao PS, Young MJ, Douglas T, Dai H, McConnell MV
Journal of Cardiovascular Magnetic Resonance 2009, 11(Suppl 1):P151 (28 January 2009)
[Abstract] [Full text] [PDF]

Poster presentation    
Viability imaging of stem cell using a MRI reporter gene and MEMRI
Chung J, Kee K, Perra RR, Yang PC
Journal of Cardiovascular Magnetic Resonance 2009, 11(Suppl 1):P181 (28 January 2009)
[Abstract] [Full text] [PDF]

Correspondence    
Race and ancestry in biomedical research: exploring the challenges
Caulfield T, Fullerton SM, Ali-Khan SE, Arbour L, Burchard EG, Cooper RS, Hardy BJ, Harry S, Hyde-Lay R, Kahn J, Kittles R, Koenig BA, Lee SSJ, Malinowski M, Ravitsky V, Sankar P, Scherer SW, Séguin B, Shickle D, Suarez-Kurtz G, Daar AS
Genome Med 2009, 1:8 (21 January 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Combining chemical genomics screens in yeast to reveal spectrum of effects of chemical inhibition of sphingolipid biosynthesis
Kemmer D, McHardy LM, Hoon S, Rebérioux D, Giaever G, Nislow C, Roskelley CD, Roberge M
BMC Microbiology 2009, 9:9 (14 January 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
Evaluation of bioluminescent imaging for noninvasive monitoring of colorectal cancer progression in the liver and its response to immunogene therapy
Zabala M, Alzuguren P, Benavides C, Crettaz J, Gonzalez-Aseguinolaza G, Ortiz de Solorzano C, Gonzalez-Aparicio M, Kramer MG, Prieto J, Hernandez-Alcoceba R
Molecular Cancer 2009, 8:2 (7 January 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Heterogeneity in the developmental potential of motor neuron progenitors revealed by clonal analysis of single cells in vitro
Agalliu D, Schieren I
Neural Development 2009, 4:2 (5 January 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Commentary    
A systematic approach to biomarker discovery; Preamble to "the iSBTc-FDA taskforce on immunotherapy biomarkers"
Butterfield LH, Disis ML, Fox BA, Lee PP, Khleif SN, Thurin M, Trinchieri G, Wang E, Wigginton J, Chaussabel D, Coukos G, Dhodapkar M, Håkansson L, Janetzki S, Kleen TO, Kirkwood JM, Maccalli C, Maecker H, Maio M, Malyguine A, Masucci G, Palucka AK, Potter DM, Ribas A, Rivoltini L, Schendel D, Seliger B, Selvan S, Slingluff CL, Stroncek DF, et al.
Journal of Translational Medicine 2008, 6:81 (23 December 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [1 comment]

Research    
Male reproductive development: gene expression profiling of maize anther and pollen ontogeny
Ma J, Skibbe DS, Fernandes J, Walbot V
Genome Biology 2008, 9:R181 (19 December 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Software    
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
Chen R, Mallelwar R, Thosar A, Venkatasubrahmanyam S, Butte AJ
BMC Bioinformatics 2008, 9:548 (18 December 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease
Chen R, Morgan AA, Dudley J, Deshpande T, Li L, Kodama K, Chiang AP, Butte AJ
Genome Biology 2008, 9:R170 (5 December 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Review    
Regulatory T cells and their role in rheumatic diseases: a potential target for novel therapeutic development
Milojevic D, Nguyen KD, Wara D, Mellins ED
Pediatric Rheumatology 2008, 6:20 (1 December 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Methodology article    
Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method
Foley JW, Katagiri F
BMC Bioinformatics 2008, 9:508 (29 November 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Risk estimation of distant metastasis in node-negative, estrogen receptor-positive breast cancer patients using an RT-PCR based prognostic expression signature
Tutt A, Wang A, Rowland C, Gillett C, Lau K, Chew K, Dai H, Kwok S, Ryder K, Shu H, Springall R, Cane P, McCallie B, Kam-Morgan L, Anderson S, Buerger H, Gray J, Bennington J, Esserman L, Hastie T, Broder S, Sninsky J, Brandt B, Waldman F
BMC Cancer 2008, 8:339 (21 November 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
The C. elegans EMAP-like protein, ELP-1 is required for touch sensation and associates with microtubules and adhesion complexes
Hueston JL, Herren GP, Cueva JG, Buechner M, Lundquist EA, Goodman MB, Suprenant KA
BMC Developmental Biology 2008, 8:110 (17 November 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Case Report    
Radiation induced malignant histiocytoma of the contralateral breast following treatment of breast cancer: a case report and review of the literature
Biswas S, Badiuddin F
Cases Journal 2008, 1:313 (17 November 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Improved identification of conserved cassette exons using Bayesian networks
Sinha R, Hiller M, Pudimat R, Gausmann U, Platzer M, Backofen R
BMC Bioinformatics 2008, 9:477 (12 November 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Case Report    
Leiomyosarcoma of the breast in a patient with a 10-year-history of cyclophosphamide exposure: a case report
De la Pena J, Wapnir I
Cases Journal 2008, 1:301 (7 November 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Method    
Boolean implication networks derived from large scale, whole genome microarray datasets
Sahoo D, Dill DL, Gentles AJ, Tibshirani R, Plevritis SK
Genome Biology 2008, 9:R157 (30 October 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Meeting abstract    
118 Manganese guided cellular MRI enables evaluation of human stromal cell viability
Yamada M, Gurney PT, Stein W, Kundu P, Smith A, Robbins RC, Yang PC
Journal of Cardiovascular Magnetic Resonance 2008, 10(Suppl 1):A19 (22 October 2008)
[Abstract] [Full text] [PDF]

Meeting abstract    
2089 Detecting inflammation in atherosclerosis using protein cage nanoparticles as cellular imaging agents
Terashima M, Uchida M, Kosuge H, Keren S, Tsao PS, Young MJ, Douglas T, McConnell MV
Journal of Cardiovascular Magnetic Resonance 2008, 10(Suppl 1):A358 (22 October 2008)
[Abstract] [Full text] [PDF]

Meeting abstract    
2105 Graphite/metal core-shell nanocrystals as MRI contrast agents to detect vascular inflammation
Kosuge H, Terashima M, Sherlock S, Lee JH, Dai H, McConnell MV
Journal of Cardiovascular Magnetic Resonance 2008, 10(Suppl 1):A374 (22 October 2008)
[Abstract] [Full text] [PDF]

Meeting abstract    
2119 Visualization of micro-vasculature using FeCo-core/graphitic-carbon-shell nanocrystals and high-resolution 3D spiral imaging
Lee JH, Terashima M, Seo WS, Kosuge H, Sherlock S, McConnell M, Nishimura D, Daiv H
Journal of Cardiovascular Magnetic Resonance 2008, 10(Suppl 1):A388 (22 October 2008)
[Abstract] [Full text] [PDF]

Meeting abstract    
230 Manganese guided cellular MRI of human embryonic stem cell viability
Yamada M, Gurney PT, Kundu P, Robbins RC, Yang PC
Journal of Cardiovascular Magnetic Resonance 2008, 10(Suppl 1):A91 (22 October 2008)
[Abstract] [Full text] [PDF]

Meeting abstract    
232 Real-time and gated MR Doppler
Santos JM, Kerr AB, Lee D, McConnell M, Hu BS, Pauly JM
Journal of Cardiovascular Magnetic Resonance 2008, 10(Suppl 1):A93 (22 October 2008)
[Abstract] [Full text] [PDF]

Technical advance    
Expression-based Pathway Signature Analysis (EPSA): Mining publicly available microarray data for insight into human disease
Tenenbaum JD, Walker MG, Utz PJ, Butte AJ
BMC Medical Genomics 2008, 1:51 (20 October 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
Intraspecific divergence in sperm morphology of the green sea urchin, Strongylocentrotus droebachiensis: implications for selection in broadcast spawners
Manier MK, Palumbi SR
BMC Evolutionary Biology 2008, 8:283 (13 October 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
A conserved acidic patch in the Myb domain is required for activation of an endogenous target gene and for chromatin binding
Ko ER, Ko D, Chen C, Lipsick JS
Molecular Cancer 2008, 7:77 (7 October 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Pharmacokinetics and pharmacodynamics of fenoldopam mesylate for blood pressure control in pediatric patients
Hammer GB, Verghese ST, Drover DR, Yaster M, Tobin JR
BMC Anesthesiology 2008, 8:6 (6 October 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Short communication    
A quantitative PCR method to detect blood microRNAs associated with tumorigenesis in transgenic mice
Fan AC, Goldrick MM, Ho J, Liang Y, Bachireddy P, Felsher DW
Molecular Cancer 2008, 7:74 (30 September 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]

Research article    
Epitope spreading to citrullinated antigens in mouse models of autoimmune arthritis and demyelination
Kidd BA, Ho PP, Sharpe O, Zhao X, Tomooka BH, Kanter JL, Steinman L, Robinson WH
Arthritis Research & Therapy 2008, 10:R119 (30 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research article    
The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
Aceituno FF, Moseyko N, Rhee SY, Gutiérrez RA
BMC Genomics 2008, 9:438 (23 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Oral presentation    
Axon/myelin traffic of Theiler's virus during persistent CNS infection
Roussarie JP, Ruffie C, Edgar JM, Griffiths I, Brahic M
BMC Proceedings 2008, 2(Suppl 1):S38 (23 September 2008)
[Abstract] [Full text] [PDF]

Research article    
Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures
Pride DT, Schoenfeld T
BMC Genomics 2008, 9:420 (17 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Method    
Model-based Analysis of ChIP-Seq (MACS)
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nussbaum C, Myers RM, Brown M, Li W, Liu XS
Genome Biology 2008, 9:R137 (17 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications
Halperin I, Glazer DS, Wu S, Altman RB
BMC Genomics 2008, 9(Suppl 2):S2 (16 September 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research    
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge
Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A
Genome Biology 2008, 9(Suppl 2):S1 (1 September 2008)
[Full text] [PDF] [PubMed] [Related articles]

Research    
Overview of BioCreative II gene normalization
Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu H, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L
Genome Biology 2008, 9(Suppl 2):S3 (1 September 2008)
[Full text] [PDF] [PubMed] [Related articles]

Research    
Text mining for biology - the way forward: opinions from leading scientists
Altman RB, Bergman CM, Blake J, Blaschke C, Cohen A, Gannon F, Grivell L, Hahn U, Hersh W, Hirschman L, Jensen LJ, Krallinger M, Mons B, O'Donoghue SI, Peitsch MC, Rebholz-Schuhmann D, Shatkay H, Valencia A
Genome Biology 2008, 9(Suppl 2):S7 (1 September 2008)
[Full text] [PDF]

Study protocol    
Ultra-brief intervention for problem drinkers: research protocol
Cunningham JA, Neighbors C, Wild C, Humphreys K
BMC Public Health 2008, 8:298 (26 August 2008)
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Research    
Association of alleles carried at TNFA -850 and BAT1 -22 with Alzheimer's disease
Gnjec A, D'Costa KJ, Laws SM, Hedley R, Balakrishnan K, Taddei K, Martins G, Paton A, Verdile G, Gandy SE, Broe GA, Brooks WS, Bennett H, Piguet O, Price P, Miklossy J, Hallmayer J, McGeer PL, Martins RN
Journal of Neuroinflammation 2008, 5:36 (20 August 2008)
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Circulating immune complexes contain citrullinated fibrinogen in rheumatoid arthritis
Zhao X, Okeke NL, Sharpe O, Batliwalla FM, Lee AT, Ho PP, Tomooka BH, Gregersen PK, Robinson WH
Arthritis Research & Therapy 2008, 10:R94 (18 August 2008)
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Association of narcolepsy-cataplexy with HLA-DRB1 and DQB1 in Mexican patients: A relationship between HLA and gender is suggested
Alaez C, Lin L, Flores-A H, Vazquez M, Munguia A, Mignot E, Haro R, Baker H, Gorodezky C
BMC Medical Genetics 2008, 9:79 (15 August 2008)
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Natural variation of HIV-1 group M integrase: Implications for a new class of antiretroviral inhibitors
Rhee SY, Liu TF, Kiuchi M, Zioni R, Gifford RJ, Holmes SP, Shafer RW
Retrovirology 2008, 5:74 (7 August 2008)
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Research    
The feasibility of preventing mother-to-child transmission of HIV using peer counselors in Zimbabwe
Shetty AK, Marangwanda C, Stranix-Chibanda L, Chandisarewa W, Chirapa E, Mahomva A, Miller A, Simoyi M, Maldonado Y
AIDS Research and Therapy 2008, 5:17 (1 August 2008)
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Research article    
A classification model to predict synergism/antagonism of cytotoxic mixtures using protein-drug docking scores
Boik JC, Newman RA
BMC Pharmacology 2008, 8:13 (29 July 2008)
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Open letter    
The ethics of characterizing difference: guiding principles on using racial categories in human genetics
Lee SSJ, Mountain J, Koenig B, Altman R, Brown M, Camarillo A, Cavalli-Sforza L, Cho M, Eberhardt J, Feldman M, Ford R, Greely H, King R, Markus H, Satz D, Snipp M, Steele C, Underhill P
Genome Biology 2008, 9:404 (15 July 2008)
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