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	1.	Research Discovery and validation of cell cycle arrest biomarkers in human acute kidney injury Kianoush Kashani, Ali Al-Khafaji, Thomas Ardiles, Antonio Artigas, Sean M Bagshaw, Max Bell, Azra Bihorac, Robert Birkhahn, Cynthia M Cely, Lakhmir S Chawla, Danielle L Davison, Thorsten Feldkamp, Lui G Forni, Michelle Gong, Kyle J Gunnerson, Michael Haase, James Hackett, Patrick M Honore, Eric AJ Hoste, Olivier Joannes-Boyau, Michael Joannidis, Patrick Kim, Jay L Koyner, Daniel T Laskowitz, Matthew E Lissauer, Gernot Marx, Peter A McCullough, Scott Mullaney, Marlies Ostermann, Thomas Rimmelé, Nathan I Shapiro, Andrew D Shaw, Jing Shi, Amy M Sprague, Jean-Louis Vincent, Christophe Vinsonneau et al. Critical Care 2013, 17:R25 (6 February 2013) Abstract \| Provisional PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology \| Editor’s summary Urine TIMP-2, and IGFBP7, two novel biomarkers for risk stratification of acute kidney injury, have been discovered and validated in more than 1000 critically ill patients.
	2.	Comment Open questions - in brief: Beyond -omics, missing motor proteins, and getting from molecules to organisms Stephen J Benkovic, Julie Theriot, Dagmar Ringe BMC Biology 2013, 11:8 (31 January 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research Modeling gene expression using chromatin features in various cellular contexts Xianjun Dong, Melissa C Greven, Anshul Kundaje, Sarah Djebali, James B Brown, Chao Cheng, Thomas R Gingeras, Mark Gerstein, Roderic Guigó, Ewan Birney, Zhiping Weng Genome Biology 2012, 13:R53 (5 September 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Models for linking gene expression with chromatin features vary according to cellular context and RNA measurement method
	4.	Research article Small RNA pyrosequencing in the protozoan parasite Entamoeba histolytica reveals strain-specific small RNAs that target virulence genes Hanbang Zhang, Gretchen M Ehrenkaufer, Neil Hall, Upinder Singh BMC Genomics 2013, 14:53 (25 January 2013) Abstract \| Provisional PDF \| PubMed
	5.	Research article FLI-1 Flightless-1 and LET-60 Ras control germ line morphogenesis in C. elegans Jiamiao Lu, William L Dentler, Erik A Lundquist BMC Developmental Biology 2008, 8:54 (16 May 2008) Abstract \| Full text \| PDF \| PubMed
	6.	Research article *Genome reannotation of the lizard Anolis carolinensis* based on 14 adult and embryonic deep transcriptomes** Walter L Eckalbar, Elizabeth D Hutchins, Glenn J Markov, April N Allen, Jason J Corneveaux, Kerstin Lindblad-Toh, Federica Di Palma, Jessica Alföldi, Matthew J Huentelman, Kenro Kusumi BMC Genomics 2013, 14:49 (23 January 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Research Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors Kevin Y Yip, Chao Cheng, Nitin Bhardwaj, James B Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter Bickel, Michael Snyder, Mark Gerstein Genome Biology 2012, 13:R48 (5 September 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Machine learning analysis of ENCODE data for 100 transcription factors reveals six classes of genomic regions
	8.	Proceedings Integration and publication of heterogeneous text-mined relationships on the Semantic Web Adrien Coulet, Yael Garten, Michel Dumontier, Russ B Altman, Mark A Musen, Nigam H Shah Journal of Biomedical Semantics 2011, 2(Suppl 2):S10 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	9.	Research Mapping between the OBO and OWL ontology languages Syed Tirmizi, Stuart Aitken, Dilvan A Moreira, Chris Mungall, Juan Sequeda, Nigam H Shah, Daniel P Miranker Journal of Biomedical Semantics 2011, 2(Suppl 1):S3 (7 March 2011) Abstract \| Full text \| PDF \| PubMed
	10.	Study protocol Evaluation of lifestyle interventions to treat elevated cardiometabolic risk in primary care (E-LITE): a randomized controlled trial Jun Ma, Abby C King, Sandra R Wilson, Lan Xiao, Randall S Stafford BMC Family Practice 2009, 10:71 (12 November 2009) Abstract \| Full text \| PDF \| PubMed
	11.	Open letter An encyclopedia of mouse DNA elements (Mouse ENCODE) John A Stamatoyannopoulos, Michael Snyder, Ross Hardison, Bing Ren, Thomas Gingeras, David M Gilbert, Mark Groudine, Michael Bender, Rajinder Kaul, Theresa Canfield, Erica Giste, Audra Johnson, Mia Zhang, Gayathri Balasundaram, Rachel Byron, Vaughan Roach, Peter J Sabo, Richard Sandstrom, A Sandra Stehling, Robert E Thurman, Sherman M Weissman, Philip Cayting, Manoj Hariharan, Jin Lian, Yong Cheng, Stephen G Landt, Zhihai Ma, Barbara J Wold, Job Dekker et al. Genome Biology 2012, 13:418 (13 August 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome
	12.	Software The Transcription Factor Encyclopedia Dimas Yusuf, Stefanie L Butland, Magdalena I Swanson, Eugene Bolotin, Amy Ticoll, Warren A Cheung, Xiao Cindy Zhang, Christopher TD Dickman, Debra L Fulton, Jonathan S Lim, Jake M Schnabl, Oscar HP Ramos, Mireille Vasseur-Cognet, Charles N de Leeuw, Elizabeth M Simpson, Gerhart U Ryffel, Eric W-F Lam, Ralf Kist, Miranda SC Wilson, Raquel Marco-Ferreres, Jan J Brosens, Leonardo L Beccari, Paola Bovolenta, Bérénice A Benayoun, Lara J Monteiro, Helma DC Schwenen, Lars Grontved, Elizabeth Wederell, Susanne Mandrup, Reiner A Veitia et al. Genome Biology 2012, 13:R24 (29 March 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary A high quality compendium of transcription factor data that allows researchers to add new data via a peer-review system
	13.	Method Model-based Analysis of ChIP-Seq (MACS) Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li, X Shirley Liu Genome Biology 2008, 9:R137 (17 September 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary MACS performs model-based analysis of ChIP-Seq data generated by short read sequencers.
	14.	Review The Stanford Health Assessment Questionnaire: Dimensions and Practical Applications Bonnie Bruce, James F Fries Health and Quality of Life Outcomes 2003, 1:20 (9 June 2003) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	15.	Proceedings Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes Paea LePendu, Srinivasan V Iyer, Cédrick Fairon, Nigam H Shah Journal of Biomedical Semantics 2012, 3(Suppl 1):S5 (24 April 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	16.	Forum What determines cell size? Wallace F Marshall, Kevin D Young, Matthew Swaffer, Elizabeth Wood, Paul Nurse, Akatsuki Kimura, Joseph Frankel, John Wallingford, Virginia Walbot, Xian Qu, Adrienne HK Roeder BMC Biology 2012, 10:101 (14 December 2012) Abstract \| Full text \| PDF \| PubMed \| 2 comments \| Editor’s summary In a Forum article in the Cell geometry series, ten experts in ten different systems explain why it matters what size a cell is, and offer ten different answers on how it is controlled – probably all of them right.
	17.	Short report A novel bocavirus in canine liver Linlin Li, Patricia A Pesavento, Christian M Leutenegger, Marko Estrada, Lark L Coffey, Samia N Naccache, Erik Samayoa, Charles Chiu, Jianming Qiu, Chunlin Wang, Xutao Deng, Eric Delwart Virology Journal 2013, 10:54 (13 February 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A new species of bocavirus has been identified in the liver of a dog with haemorrhagic gastoenteritis and is highly genetically distinct from the two known canine bocaviruses.
	18.	Software clusterMaker: a multi-algorithm clustering plugin for Cytoscape John H Morris, Leonard Apeltsin, Aaron M Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D Bader, Thomas E Ferrin BMC Bioinformatics 2011, 12:436 (9 November 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	19.	Research Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers Alayne L Brunner, Andrew H Beck, Badreddin Edris, Robert T Sweeney, Shirley X Zhu, Rui Li, Kelli Montgomery, Sushama Varma, Thea Gilks, Xiangqian Guo, Joseph W Foley, Daniela M Witten, Craig P Giacomini, Ryan A Flynn, Jonathan R Pollack, Robert Tibshirani, Howard Y Chang, Matt van de Rijn, Robert B West Genome Biology 2012, 13:R75 (28 August 2012) Abstract \| Provisional PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Transcript sequencings from 64 solid tumours of 17 diagnostic classes reveals cancer-specific lncRNAs
	20.	Research article Human colon cancer profiles show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states Aaron L Sarver, Amy J French, Pedro M Borralho, Venugopal Thayanithy, Ann L Oberg, Kevin AT Silverstein, Bruce W Morlan, Shaun M Riska, Lisa A Boardman, Julie M Cunningham, Subbaya Subramanian, Liang Wang, Tom C Smyrk, Cecilia MP Rodrigues, Stephen N Thibodeau, Clifford J Steer BMC Cancer 2009, 9:401 (18 November 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21.	Research Ablation of rat TRPV1-expressing Adelta/C-fibers with resiniferatoxin: analysis of withdrawal behaviors, recovery of function and molecular correlates Kendall Mitchell, Brian D Bates, Jason M Keller, Matthew Lopez, Lindsey Scholl, Julia Navarro, Nicholas Madian, Gal Haspel, Michael I Nemenov, Michael J Iadarola Molecular Pain 2010, 6:94 (17 December 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	22.	Comment Are we training pit bulls to review our manuscripts? Virginia Walbot Journal of Biology 2009, 8:24 (9 March 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 4 comments \| Editor’s summary Virginia Walbot accepts some of the blame for remorselessly negative reviewers, and suggests a training program for graduate students and post docs that will deliver a fairer assessment of manuscripts.
	23.	Research article The effect of a cold beverage during an exercise session combining both strength and energy systems development training on core temperature and markers of performance Danielle LaFata, Amanda Carlson-Phillips, Stacy T Sims, Elizabeth M Russell Journal of the International Society of Sports Nutrition 2012, 9:44 (19 September 2012) Abstract \| Full text \| PDF \| PubMed
	24.	Research article Identification of somatic and germline mutations using whole exome sequencing of congenital acute lymphoblastic leukemia Vivian Y Chang, Giuseppe Basso, Kathleen M Sakamoto, Stanley F Nelson BMC Cancer 2013, 13:55 (4 February 2013) Abstract \| Full text \| PDF \| PubMed
	25.	Research article Anti-NMDA-receptor antibody detected in encephalitis, schizophrenia, and narcolepsy with psychotic features Ko Tsutsui, Takashi Kanbayashi, Keiko Tanaka, Shuken Boku, Wakako Ito, Jun Tokunaga, Akane Mori, Yasuo Hishikawa, Tetsuo Shimizu, Seiji Nishino BMC Psychiatry 2012, 12:37 (8 May 2012) Abstract \| Full text \| PDF \| PubMed