BioMed Central | Members | Stanford University

Research staff and students at Stanford University:
Do you realize that you will get a 15% discount on the article processing charges of all research articles accepted for publication in journals published by BioMed Central? Read more information about publishing your articles with BioMed Central.

Work published with BioMed Central in the last 12 months by researchers at Stanford University

Order by: Date published / Most viewed (30 days) / Most viewed (past year)

1. Accesses 2140	Research article *Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila* and is essential for starvation resistance Honegger B, Galic M, Köhler K, Wittwer F, Brogiolo W, Hafen E, Stocker H** Journal of Biology 2008, 7:10 (15 April 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
2. Accesses 581	Research A sequence-based survey of the complex structural organization of tumor genomes Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC Genome Biology 2008, 9:R59 (25 March 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
3. Accesses 505	Research Quantitative characterization of myocardial infarction by cardiovascular magnetic resonance predicts future cardiovascular events in patients with ischemic cardiomyopathy Yokota H, Heidary S, Katikireddy CK, Nguyen P, Pauly JM, McConnell MV, Yang PC Journal of Cardiovascular Magnetic Resonance 2008, 10:17 (9 April 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
4. Accesses 419	Method Exon arrays provide accurate assessments of gene expression Kapur K, Xing Y, Ouyang Z, Wong WH Genome Biology 2007, 8:R82 (15 May 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
5. Accesses 323	Research Research priorities in pediatric rheumatology: The Childhood Arthritis and Rheumatology Research Alliance (CARRA) consensus Ota S, Cron RQ, Schanberg LE, O'Neil K, Mellins ED, Fuhlbrigge RC, Feldman BM Pediatric Rheumatology 2008, 6:5 (1 April 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
6. Accesses 307	Methodology article RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies Ribeiro-Silva A, Zhang H, Jeffrey SS BMC Molecular Biology 2007, 8:118 (21 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
7. Accesses 292	Research article New models and online calculator for predicting non-sentinel lymph node status in sentinel lymph node positive breast cancer patients Kohrt HE, Olshen RA, Bermas HR, Goodson WH, Wood DJ, Henry S, Rouse RV, Bailey L, Philben VJ, Dirbas FM, Dunn JJ, Johnson DL, Wapnir IL, Carlson RW, Stockdale FE, Hansen NM, Jeffrey SS, The Bay Area SLN Study BMC Cancer 2008, 8:66 (4 March 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
8. Accesses 285	Research article Quantum dot imaging for embryonic stem cells Lin S, Xie X, Patel MR, Yang YH, Li Z, Cao F, Gheysens O, Zhang Y, Gambhir SS, Rao JH, Wu JC BMC Biotechnology 2007, 7:67 (9 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
9. Accesses 268	Research article Xenopus importin beta validates human importin beta as a cell cycle negative regulator Delmar VA, Chan RC, Forbes DJ BMC Cell Biology 2008, 9:14 (22 March 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
10. Accesses 264	Research Small interfering RNA targeting CDC25B inhibits liver tumor growth in vitro and in vivo Yan X, Chua MS, He J, So SK Molecular Cancer 2008, 7:19 (12 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
11. Accesses 260	Research article Glioma cells on the run the migratory transcriptome of 10 human glioma cell lines Demuth T, Rennert JL, Hoelzinger DB, Reavie LB, Nakada M, Beaudry C, Nakada S, Anderson EM, Henrichs AN, McDonough WS, Holz D, Joy A, Lin R, Pan KH, Lih CJ, Cohen SN, Berens ME BMC Genomics 2008, 9:54 (29 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
12. Accesses 243	Research article *Dominant negative Bmp5* mutation reveals key role of BMPs in skeletal response to mechanical stimulation Ho AM, Marker PC, Peng H, Quintero AJ, Kingsley DM, Huard J** BMC Developmental Biology 2008, 8:35 (1 April 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
13. Accesses 232	Technical advance Can modern infrared analyzers replace gas chromatography to measure anesthetic vapor concentrations? Hendrickx JFA, Lemmens HJM, Carette R, De Wolf AM, Saidman LJ BMC Anesthesiology 2008, 8:2 (8 February 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
14. Accesses 216	Research Gene-expression patterns reveal underlying biological processes in Kawasaki disease Popper SJ, Shimizu C, Shike H, Kanegaye JT, Newburger JW, Sundel RP, Brown PO, Burns JC, Relman DA Genome Biology 2007, 8:R261 (11 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
15. Accesses 215	Research article A Marfan syndrome gene expression phenotype in cultured skin fibroblasts Yao Z, Jaeger JC, Ruzzo WL, Morale CZ, Emond M, Francke U, Milewicz DM, Schwartz SM, Mulvihill ER BMC Genomics 2007, 8:319 (12 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
16. Accesses 213	Research Enkephalin-encoding herpes simplex virus-1 decreases inflammation and hotplate sensitivity in a chronic pancreatitis model Yang H, McNearney TA, Chu R, Lu Y, Ren Y, Yeomans DC, Wilson SP, Westlund KN Molecular Pain 2008, 4:8 (28 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
17. Accesses 211	Research article TP53 mutation status and gene expression profiles are powerful prognostic markers of breast cancer Langerød A, Zhao H, Borgan , Nesland JM, Bukholm IRK, Ikdahl T, Kåresen R, Børresen-Dale AL, Jeffrey SS Breast Cancer Research 2007, 9:R30 (15 May 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
18. Accesses 211	Research article Recent breast cancer trends among Asian/Pacific Islander, Hispanic, and African-American women in the US: changes by tumor subtype Hausauer AK, Keegan THM, Chang ET, Clarke CA Breast Cancer Research 2007, 9:R90 (27 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
19. Accesses 210	Method InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale Wang H, Segal E, Ben-Hur A, Li QR, Vidal M, Koller D Genome Biology 2007, 8:R192 (14 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
20. Accesses 201	Original investigation Does the association of the triglyceride to high-density lipoprotein cholesterol ratio with fasting serum insulin differ by race/ethnicity? Li C, Ford ES, Meng YX, Mokdad AH, Reaven GM Cardiovascular Diabetology 2008, 7:4 (28 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
21. Accesses 201	Research siRNA screen of the human signaling proteome identifies the PtdIns(3,4,5)P₃-mTOR signaling pathway as a primary regulator of transferrin uptake Galvez T, Teruel MN, Heo WD, Jones JT, Kim ML, Liou J, Myers JW, Meyer T Genome Biology 2007, 8:R142 (19 July 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
22. Accesses 200	Research article **EDR2 negatively regulates salicylic acid-based defenses and cell death during powdery mildew infections of Arabidopsis thaliana Vorwerk S, Schiff C, Santamaria M, Koh S, Nishimura M, Vogel J, Somerville C, Somerville S** BMC Plant Biology 2007, 7:35 (6 July 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
23. Accesses 188	Methodology article Bacterial flora-typing with targeted, chip-based Pyrosequencing Sundquist A, Bigdeli S, Jalili R, Druzin ML, Waller S, Pullen KM, El-Sayed YY, Taslimi MM, Batzoglou S, Ronaghi M BMC Microbiology 2007, 7:108 (30 November 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
24. Accesses 183	Research article *Failure to replicate an association of SNPs in the oxidized LDL receptor gene (OLR1) with CAD* Knowles JW, Assimes TL, Boerwinkle E, Fortmann SP, Go A, Grove ML, Hlatky M, Iribarren C, Li J, Myers R, Risch N, Sidney S, Southwick A, Volcik KA, Quertermous T BMC Medical Genetics 2008, 9:23 (2 April 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
25. Accesses 179	Research Diagnostic utility of B-type natriuretic peptide in critically ill patients with pulmonary edema: a prospective cohort study Levitt JE, Vinayak AG, Gehlbach BK, Pohlman A, Van Cleve W, Hall JB, Kress JP Critical Care 2008, 12:R3 (14 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
26. Accesses 176	Review World Antimalarial Resistance Network (WARN) III: Molecular markers for drug resistant malaria Plowe CV, Roper C, Barnwell JW, Happi CT, Joshi HH, Mbacham W, Meshnick SR, Mugittu K, Naidoo I, Price RN, Shafer RW, Sibley CH, Sutherland CJ, Zimmerman PA, Rosenthal PJ Malaria Journal 2007, 6:121 (6 September 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
27. Accesses 173	Research article A comprehensive analysis of common genetic variation in prolactin (PRL) and PRL receptor (PRLR) genes in relation to plasma prolactin levels and breast cancer risk: the Multiethnic Cohort Lee SA, Haiman CA, Burtt NP, Pooler LC, Cheng I, Kolonel LN, Pike MC, Altshuler D, Hirschhorn JN, Henderson BE, Stram DO BMC Medical Genetics 2007, 8:72 (1 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
28. Accesses 173	Research Chronic morphine administration enhances nociceptive sensitivity and local cytokine production after incision Liang DY, Shi X, Qiao Y, Angst MS, Yeomans DC, Clark JD Molecular Pain 2008, 4:7 (22 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
29. Accesses 164	Method The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation Wu S, Liang MP, Altman RB Genome Biology 2008, 9:R8 (16 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
30. Accesses 162	Research The temporal program of peripheral blood gene expression in the response of nonhuman primates to Ebola hemorrhagic fever Rubins KH, Hensley LE, Wahl-Jensen V, Daddario DiCaprio KM, Young HA, Reed DS, Jahrling PB, Brown PO, Relman DA, Geisbert TW Genome Biology 2007, 8:R174 (28 August 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
31. Accesses 160	Research *Characterization of heterotypic interaction effects in vitro* to deconvolute global gene expression profiles in cancer Buess M, Nuyten DSA, Hastie T, Nielsen T, Pesich R, Brown PO** Genome Biology 2007, 8:R191 (14 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
32. Accesses 157	Research Bioluminescence in vivo imaging of autoimmune encephalomyelitis predicts disease Luo J, Ho P, Steinman L, Wyss-Coray T Journal of Neuroinflammation 2008, 5:6 (1 February 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
33. Accesses 148	Method Consistent dissection of the protein interaction network by combining global and local metrics Wang C, Ding C, Yang Q, Holbrook SR Genome Biology 2007, 8:R271 (21 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
34. Accesses 145	Research article LIF promotes neurogenesis and maintains neural precursors in cell populations derived from spiral ganglion stem cells Oshima K, Teo DTW, Senn P, Starlinger V, Heller S BMC Developmental Biology 2007, 7:112 (12 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
35. Accesses 136	Research Reduced selection leads to accelerated gene loss in Shigella Hershberg R, Tang H, Petrov DA Genome Biology 2007, 8:R164 (8 August 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
36. Accesses 135	Method *CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo* gene prediction Gross SS, Do CB, Sirota M, Batzoglou S** Genome Biology 2007, 8:R269 (20 December 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
37. Accesses 126	Research article Evolution favors protein mutational robustness in sufficiently large populations Bloom JD, Lu Z, Chen D, Raval A, Venturelli OS, Arnold FH BMC Biology 2007, 5:29 (17 July 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
38. Accesses 123	Research article A replica exchange Monte Carlo algorithm for protein folding in the HP model Thachuk C, Shmygelska A, Hoos HH BMC Bioinformatics 2007, 8:342 (17 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
39. Accesses 120	Research article *Lola regulates Drosophila* olfactory projection neuron identity and targeting specificity Spletter ML, Liu J, Liu J, Su H, Giniger E, Komiyama T, Quake S, Luo L** Neural Development 2007, 2:14 (16 July 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
40. Accesses 116	Research article Recent changes in breast cancer incidence and risk factor prevalence in San Francisco Bay area and California women: 1988 to 2004 Keegan THM, Chang ET, John EM, Horn-Ross PL, Wrensch MR, Glaser SL, Clarke CA Breast Cancer Research 2007, 9:R62 (25 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
41. Accesses 115	Research article Cerebellar gene expression profiles of mouse models for Rett syndrome reveal novel MeCP2 targets Jordan CR, Li HH, Kwan HC, Francke U BMC Medical Genetics 2007, 8:36 (20 June 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
42. Accesses 111	Research article Visual inspection with acetic acid as a cervical cancer test: accuracy validated using latent class analysis Gaffikin L, McGrath JA, Arbyn M, Blumenthal PD BMC Medical Research Methodology 2007, 7:36 (31 July 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
43. Accesses 110	Research Health-related quality of life and migration: A cross-sectional study on elderly Iranians in Sweden Koochek A, Montazeri A, Johansson SE, Sundquist J Health and Quality of Life Outcomes 2007, 5:60 (23 November 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
44. Accesses 107	Research Functional constraint and small insertions and deletions in the ENCODE regions of the human genome Clark TG, Andrew T, Cooper GM, Margulies EH, Mullikin JC, Balding DJ Genome Biology 2007, 8:R180 (4 September 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
45. Accesses 103	Research article Gene expression changes associated with Barrett's esophagus and Barrett's-associated adenocarcinoma cell lines after acid or bile salt exposure Hao Y, Sood S, Triadafilopoulos G, Kim JH, Wang Z, Sahbaie P, Omary MB, Lowe AW BMC Gastroenterology 2007, 7:24 (27 June 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
46. Accesses 103	Research article What orthopaedic surgery residents need to know about the hand and wrist? Wadey VMR, Ladd A, Dev P, Walker D BMC Medical Education 2007, 7:33 (5 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
47. Accesses 96	Research article The type III neurofilament peripherin is expressed in the tuberomammillary neurons of the mouse Eriksson KS, Zhang S, Lin L, Larivière RC, Julien JP, Mignot E BMC Neuroscience 2008, 9:26 (24 February 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
48. Accesses 94	Research Morphine reduces local cytokine expression and neutrophil infiltration after incision Clark JD, Shi X, Li X, Qiao Y, Liang DY, Angst MS, Yeomans DC Molecular Pain 2007, 3:28 (2 October 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
49. Accesses 90	Research article MScanner: a classifier for retrieving Medline citations Poulter GL, Rubin DL, Altman RB, Seoighe C BMC Bioinformatics 2008, 9:108 (19 February 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
50. Accesses 90	Research article Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis Gogol EB, Cummings CA, Burns RC, Relman DA BMC Genomics 2007, 8:122 (17 May 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
51. Accesses 89	Research article A study on the two binding sites of hexokinase on brain mitochondria Golestani A, Ramshini H, Nemat-Gorgani M BMC Biochemistry 2007, 8:20 (20 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
52. Accesses 89	Research article A non-circadian role for clock-genes in sleep homeostasis:a strain comparison Franken P, Thomason R, Heller HC, O'Hara BF BMC Neuroscience 2007, 8:87 (18 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
53. Accesses 84	Research article *MyoD- and nerve-dependent maintenance of MyoD* expression in mature muscle fibres acts through the DRR/PRR element Chargé SB, Brack AS, Bayol SA, Hughes SM** BMC Developmental Biology 2008, 8:5 (23 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
54. Accesses 83	Research article *Reduced expression of TAC1, PENK* and SOCS2 in Hcrtr-2 mutated narcoleptic dog brain Lindberg J, Saetre P, Nishino S, Mignot E, Jazin E** BMC Neuroscience 2007, 8:34 (23 May 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
55. Accesses 79	Research article Constructing a meaningful evolutionary average at the phylogenetic center of mass Stone EA, Sidow A BMC Bioinformatics 2007, 8:222 (26 June 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
56. Accesses 79	Software The XBabelPhish MAGE-ML and XML Translator Maier D, Wymore F, Sherlock G, Ball CA BMC Bioinformatics 2008, 9:28 (18 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
57. Accesses 77	Research article Preimplantation expression of the somatic form of Dnmt1 suggests a role in the inheritance of genomic imprints Cirio MC, Ratnam S, Ding F, Reinhart B, Navara C, Chaillet JR BMC Developmental Biology 2008, 8:9 (25 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
58. Accesses 77	Research Multiple independent origins of a protease inhibitor resistance mutation in salvage therapy patients Kapoor A, Shapiro B, Shafer RW, Shulman N, Rhee SY, Delwart EL Retrovirology 2008, 5:7 (25 January 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
59. Accesses 76	Research article Intrinsic androgen-dependent gene expression patterns revealed by comparison of genital fibroblasts from normal males and individuals with complete and partial androgen insensitivity syndrome Holterhus PM, Deppe U, Werner R, Richter-Unruh A, Bebermeier JH, Wünsch L, Krege S, Schweikert HU, Demeter J, Riepe F, Hiort O, Brooks JD BMC Genomics 2007, 8:376 (18 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
60. Accesses 74	Research article Optimizations for the EcoPod field identification tool Manoharan A, Stamberger J, Yu YY, Paepcke A BMC Bioinformatics 2008, 9:150 (17 March 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
61. Accesses 72	Research article Identification of the Otopetrin Domain, a conserved domain in vertebrate otopetrins and invertebrate otopetrin-like family members Hughes I, Binkley J, Hurle B, Green ED, NISC Comparative Sequencing Program , Sidow A, Ornitz DM BMC Evolutionary Biology 2008, 8:41 (6 February 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
62. Accesses 72	Research article Trichostatin A effects on gene expression in the protozoan parasite Entamoeba histolytica Ehrenkaufer GM, Eichinger DJ, Singh U BMC Genomics 2007, 8:216 (5 July 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
63. Accesses 71	Research article Slow GABA_Amediated synaptic transmission in rat visual cortex Sceniak MP, MacIver MB BMC Neuroscience 2008, 9:8 (16 January 2008) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
64. Accesses 68	Research article Disparities in mammographic screening for Asian women in California: a cross-sectional analysis to identify meaningful groups for targeted intervention Gomez SL, Tan S, Keegan THM, Clarke CA BMC Cancer 2007, 7:201 (26 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
65. Accesses 67	Research article Longitudinal, population-based study of racial/ethnic differences in colorectal cancer survival: impact of neighborhood socioeconomic status, treatment and comorbidity Gomez SL, O'Malley CD, Stroup A, Shema SJ, Satariano WA BMC Cancer 2007, 7:193 (16 October 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
66. Accesses 65	Research article Automating document classification for the Immune Epitope Database Wang P, Morgan AA, Zhang Q, Sette A, Peters B BMC Bioinformatics 2007, 8:269 (26 July 2007) [Abstract] [Full text] [PDF] [PubMed] [Related articles]
67. Accesses 64	Methodology article