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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Texas San Antonio UTSA

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	1.	Research *Proteolysis of Xenopus* Cip-type CDK inhibitor, p16^Xic2, is regulated by PCNA binding and CDK2 phosphorylation** Xi-Ning Zhu, Dong Hyun Kim, Horng-Ru Lin, Varija N Budhavarapu, Herbert B Rosenbaum, Paul R Mueller, P Renee Yew Cell Division 2013, 8:5 (22 April 2013) Abstract \| Full text \| PDF \| PubMed
	2.	Proceedings A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks Zhen Gao, Ruizhe Zhao, Jianhua Ruan BMC Genomics 2013, 14(Suppl 1):S4 (21 January 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research Decomposing Kenyan socio-economic inequalities in skilled birth attendance and measles immunization Carine Van Malderen, Irene Ogali, Anne Khasakhala, Stephen N Muchiri, Corey Sparks, Herman Van Oyen, Niko Speybroeck International Journal for Equity in Health 2013, 12:3 (7 January 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research A Bayesian decision fusion approach for microRNA target prediction Dong Yue, Maozu Guo, Yidong Chen, Yufei Huang BMC Genomics 2012, 13(Suppl 8):S13 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	5.	Research Mathematical modeling of left ventricular dimensional changes in mice during aging Tianyi Yang, Ying Chiao, Yunji Wang, Andrew Voorhees, Hai-Chao Han, Merry L Lindsey, Yu-Fang Jin BMC Systems Biology 2012, 6(Suppl 3):S10 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	6.	Research Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum Hong Cai, Changjin Hong, Jianying Gu, Timothy G Lilburn, Rui Kuang, Yufeng Wang BMC Systems Biology 2012, 6(Suppl 3):S5 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	7.	Introduction Advances in systems biology: computational algorithms and applications Yufei Huang, Zhongming Zhao, Hua Xu, Yu Shyr, Bing Zhang BMC Systems Biology 2012, 6(Suppl 3):S1 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	8.	Introduction Genomics in 2012: challenges and opportunities in the next generation sequencing era Zhongming Zhao, Yufei Huang, Bing Zhang, Yu Shyr, Hua Xu BMC Genomics 2012, 13(Suppl 8):S1 (17 December 2012) Abstract \| Full text \| PDF \| PubMed
	9.	Research article Depletion of neutrophils in a protective model of pulmonary cryptococcosis results in increased IL-17A production by gamma/delta T cells Karen L Wozniak, Jay K Kolls, Floyd L Wormley BMC Immunology 2012, 13:65 (7 December 2012) Abstract \| Full text \| PDF \| PubMed
	10.	Nano Express Morphological, compositional, structural, and optical properties of Si-nc embedded in SiO_x films J Alberto López, J Carrillo López, D E Vázquez Valerdi, G García Salgado, T Díaz-Becerril, A Ponce Pedraza, F J Flores Gracia Nanoscale Research Letters 2012, 7:604 (30 October 2012) Abstract \| Full text \| PDF \| PubMed
	11.	Research Mathematical modeling and stability analysis of macrophage activation in left ventricular remodeling post-myocardial infarction Yunji Wang, Tianyi Yang, Yonggang Ma, Ganesh V Halade, Jianqiu Zhang, Merry L Lindsey, Yu-Fang Jin BMC Genomics 2012, 13(Suppl 6):S21 (26 October 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12.	Research A nonparametric Bayesian approach for clustering bisulfate-based DNA methylation profiles Lin Zhang, Jia Meng, Hui Liu, Yufei Huang BMC Genomics 2012, 13(Suppl 6):S20 (26 October 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	13.	Research A Steiner tree-based method for biomarker discovery and classification in breast cancer metastasis Md Jamiul Jahid, Jianhua Ruan BMC Genomics 2012, 13(Suppl 6):S8 (26 October 2012) Abstract \| Full text \| PDF \| PubMed
	14.	Introduction Selected articles from the IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS'2011) Ranadip Pal, Yufei Huang, Yidong Chen BMC Genomics 2012, 13(Suppl 6):S1 (26 October 2012) Full text \| PDF \| PubMed \| Cited on BioMed Central
	15.	Poster presentation Modeling the effects of molecular crowding on cerebellar long term depression Horace Deans, Fidel Santamaria BMC Neuroscience 2012, 13(Suppl 1):P47 (16 July 2012) Full text \| PDF
	16.	Poster presentation Variability of inter-syllable gaps challenges the branched-chain model of sequence production in Bengalese finches Kristofer E Bouchard, Anand S Kulkarni, Michael S Brainard, Todd W Troyer BMC Neuroscience 2012, 13(Suppl 1):P19 (16 July 2012) Full text \| PDF
	17.	Poster presentation Spike threshold dynamics reshape the phase response curve and increase the degree of synchronization among neurons coupled by excitatory synapses Michael A Farries, Charles J Wilson BMC Neuroscience 2012, 13(Suppl 1):P12 (16 July 2012) Full text \| PDF
	18.	Research Transcriptome analysis of the ependymal barrier during murine neurocysticercosis Pramod Mishra, Judy M Teale Journal of Neuroinflammation 2012, 9:141 (25 June 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Proceedings Genome plasticity and systems evolution in Streptomyces Zhan Zhou, Jianying Gu, Yong-Quan Li, Yufeng Wang BMC Bioinformatics 2012, 13(Suppl 10):S8 (25 June 2012) Abstract \| Full text \| PDF \| PubMed
	20.	Research article Protease-associated cellular networks in malaria parasite Plasmodium falciparum Timothy G Lilburn, Hong Cai, Zhan Zhou, Yufeng Wang BMC Genomics 2011, 12(Suppl 5):S9 (23 December 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21.	Research article Bayesian parameter estimation for nonlinear modelling of biological pathways Omid Ghasemi, Merry L Lindsey, Tianyi Yang, Nguyen Nguyen, Yufei Huang, Yu-Fang Jin BMC Systems Biology 2011, 5(Suppl 3):S9 (23 December 2011) Abstract \| Full text \| PDF
	22.	Research Loss of the bloom syndrome helicase increases DNA ligase 4-independent genome rearrangements and tumorigenesis in aging Drosophila Ana Garcia, Robert N Salomon, Alice Witsell, Justine Liepkalns, R Brent Calder, Moonsook Lee, Martha Lundell, Jan Vijg, Mitch McVey Genome Biology 2011, 12:R121 (19 December 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Drosophila blm mutants show an increase in genome rearrangements which, surprisingly, are independent of DNA ligase 4
	23.	Proceedings Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana Jianhua Ruan, Joseph Perez, Brian Hernandez, Chengwei Lei, Garry Sunter, Valerie M Sponsel BMC Bioinformatics 2011, 12(Suppl 12):S2 (24 November 2011) Abstract \| Full text \| PDF \| PubMed
	24.	Methodology article SCFIA: a statistical corresponding feature identification algorithm for LC/MS Jian Cui, Xuepo Ma, Long Chen, Jianqiu Zhang BMC Bioinformatics 2011, 12:439 (11 November 2011) Abstract \| Full text \| PDF \| PubMed
	25.	Research article Biofilm and planktonic pneumococci demonstrate disparate immunoreactivity to human convalescent sera Carlos J Sanchez, Brady J Hurtgen, Anel Lizcano, Pooja Shivshankar, Garry T Cole, Carlos J Orihuela BMC Microbiology 2011, 11:245 (2 November 2011) Abstract \| Full text \| PDF \| PubMed