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201.

Research   Open Access

Quantitative image analysis of intra-tumoral bFGF level as a molecular marker of paclitaxel resistance

Colin T Walsh, Yong Wei, M Guillaume Wientjes, Jessie LS Au Journal of Translational Medicine 2008, 6:4 (18 January 2008)

Abstract | Full text | PDF | PubMed

202.

Methodology article   Open Access Highly Accessed

A highly sensitive and specific system for large-scale gene expression profiling

Guohong Hu, Qifeng Yang, Xiangfeng Cui, Gang Yue, Marco A Azaro, Hui-Yun Wang, Honghua Li BMC Genomics 2008, 9:9 (10 January 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

203.

Research article   Open Access

Specificity of DNA-binding by the FAX-1 and NHR-67 nuclear receptors of Caenorhabditis elegans is partially mediated via a subclass-specific P-box residue

Stephen D DeMeo, Rebecca M Lombel, Melissa Cronin, Eric L Smith, Danielle R Snowflack, Kristy Reinert, Sheila Clever, Bruce Wightman BMC Molecular Biology 2008, 9:2 (7 January 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

204.

Research Article   Open Access

Probabilistic Global Motion Estimation Based on Laplacian Two-Bit Plane Matching for Fast Digital Image Stabilization

Nam-Joon Kim, Hyuk-Jae Lee, Jae-Beom Lee EURASIP Journal on Advances in Signal Processing 2008, 2008:180582 (1 January 2008)

Abstract | Full text | PDF

205.

Research Article   Open Access

Activity Representation Using 3D Shape Models

MohamedF Abdelkader, AmitK Roy-Chowdhury, Rama Chellappa, Umut Akdemir EURASIP Journal on Image and Video Processing 2008, 2008:347050 (6 December 2007)

Abstract | Full text | PDF

206.

Research article   Open Access Highly Accessed

Analysis of gene expression during neurite outgrowth and regeneration

Moriah L Szpara, Karen Vranizan, Yu Tai, Corey S Goodman, Terence P Speed, John Ngai BMC Neuroscience 2007, 8:100 (23 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

207.

Database   Open Access

A database of schemes that prioritize sites and species based on their conservation value: focusing business on biodiversity

Arthur G Blundell, Tormod V Burkey BMC Ecology 2007, 7:10 (27 September 2007)

Abstract | Full text | PDF | PubMed

208.

Review   Open Access Highly Accessed

Inferring cellular networks – a review

Florian Markowetz, Rainer Spang BMC Bioinformatics 2007, 8(Suppl 6):S5 (27 September 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

209.

Research Article   Open Access

Pose-Encoded Spherical Harmonics for Face Recognition and Synthesis Using a Single Image

Zhanfeng Yue, Wenyi Zhao, Rama Chellappa EURASIP Journal on Advances in Signal Processing 2008, 2008:748483 (25 September 2007)

Abstract | Full text | PDF

210.

Methodology article   Open Access

Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy

Guangan Hu, Manuel LlinĂ¡s, Jingguang Li, Peter Preiser, Zbynek Bozdech BMC Bioinformatics 2007, 8:350 (19 September 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

211.

Research   Open Access Highly Accessed

Extensive parallelism in protein evolution

Georgii A Bazykin, Fyodor A Kondrashov, Michael Brudno, Alexander Poliakov, Inna Dubchak, Alexey S Kondrashov Biology Direct 2007, 2:20 (16 August 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

212.

Research article   Open Access Highly Accessed

Portraits of breast cancer progression

Gul S Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot BMC Bioinformatics 2007, 8:291 (6 August 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

213.

Method   Open Access

High-throughput analysis of spatio-temporal dynamics in Dictyostelium

Satoshi Sawai, Xiao-Juan Guan, Adam Kuspa, Edward C Cox Genome Biology 2007, 8:R144 (21 July 2007)

Abstract | Full text | PDF | PubMed |  Editor’s summary

A time-lapse based approach is presented that allows a rapid examination of the spatio-temporal dynamics of Dictyostelium cell populations, enabling users to search and retrieve movies on a gene-by-gene and phenotype-by-phenotype basis.

214.

Software   Open Access Highly Accessed

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

Curtis Huttenhower, Avi I Flamholz, Jessica N Landis, Sauhard Sahi, Chad L Myers, Kellen L Olszewski, Matthew A Hibbs, Nathan O Siemers, Olga G Troyanskaya, Hilary A Coller BMC Bioinformatics 2007, 8:250 (12 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

215.

Research   Open Access

Protease inhibitor associated mutations compromise the efficacy of therapy in human immunodeficiency virus – 1 (HIV-1) infected pediatric patients: a cross-sectional study

Amisha Malhotra, Sunanda Gaur, Patricia Whitley-Williams, Caitlin Loomis, Anna Petrova AIDS Research and Therapy 2007, 4:15 (9 July 2007)

Abstract | Full text | PDF | PubMed

216.

Oral presentation   Open Access

Neural coding of natural stimuli: information at sub-millisecond resolution

Ilya Nemenman, Geoffrey D Lewen, William Bialek, Rob R de Ruyter van Steveninck BMC Neuroscience 2007, 8(Suppl 2):S7 (6 July 2007)

Full text | PDF

217.

Research   Open Access Highly Accessed

Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system

Stephen E Von Stetina, Joseph D Watson, Rebecca M Fox, Kellen L Olszewski, W Clay Spencer, Peter J Roy, David M Miller Genome Biology 2007, 8:R135 (5 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A novel strategy for profiling Caenorhabditis elegans cells identifies transcripts highly enriched in either the embryonic or larval C. elegans nervous system, including 19 conserved transcripts of unknown function that are also expressed in the mammalian brain.

218.

Research   Open Access Highly Accessed

Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer

Sergio Kaiser, Young-Kyu Park, Jeffrey L Franklin, Richard B Halberg, Ming Yu, Walter J Jessen, Johannes Freudenberg, Xiaodi Chen, Kevin Haigis, Anil G Jegga, Sue Kong, Bhuvaneswari Sakthivel, Huan Xu, Timothy Reichling, Mohammad Azhar, Gregory P Boivin, Reade B Roberts, Anika C Bissahoyo, Fausto Gonzales, Greg C Bloom, Steven Eschrich, Scott L Carter, Jeremy E Aronow, John Kleimeyer, Michael Kleimeyer, Vivek Ramaswamy, Stephen H Settle, Braden Boone, Shawn Levy, Jonathan M Graff et al. Genome Biology 2007, 8:R131 (5 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Colon tumors from four independent mouse models and 100 human colorectal cancers all exhibited striking recapitulation of embryonic colon gene expression from embryonic days 13.5-18.5.

219.

Research article   Open Access Highly Accessed

Coordinated regulation of Myc trans-activation targets by Polycomb and the Trithorax group protein Ash1

Julie M Goodliffe, Michael D Cole, Eric Wieschaus BMC Molecular Biology 2007, 8:40 (22 May 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

220.

Proceedings   Open Access

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition

Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Noble, Christina Leslie BMC Bioinformatics 2007, 8(Suppl 4):S2 (22 May 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

221.

Research   Open Access

Adenovirus type 5 exerts genome-wide control over cellular programs governing proliferation, quiescence, and survival

Daniel L Miller, Chad L Myers, Brenden Rickards, Hilary A Coller, S Jane Flint Genome Biology 2007, 8:R58 (12 April 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The effects of the adenovirus Ad5 on basic host cell programs, such as cell-cycle regulation, were studied in a microarray analysis of human fibroblasts. About 2,000 genes were up- or down-regulated after Ad5 infection and Ad5 infection was shown to induce reversal of the quiescence program and recapitulation of the core serum response.

222.

Poster presentation   Free

Early hypothermia in severely injured trauma patients is a significant risk factor for multiple organ dysfunction syndrome but not mortality

G Beilman, T Nelson, A Nathens, F Moore, P Rhee, J Puyana, E Moore, S Cohn Critical Care 2007, 11(Suppl 2):P345 (22 March 2007)

Full text | PDF

223.

Research Article   Open Access

On Energy-Efficient Hierarchical Cross-Layer Design: Joint Power Control and Routing for Ad Hoc Networks

Cristina Comaniciu, HVincent Poor EURASIP Journal on Wireless Communications and Networking 2007, 2007:060707 (14 March 2007)

Abstract | Full text | PDF

224.

Research   Open Access

Examining correlates of treatment satisfaction for injectable insulin in type 2 diabetes: lessons learned from a clinical trial comparing biphasic and basal analogues

Meryl Brod, David Cobden, Morten Lammert, Donald Bushnell, Philip Raskin Health and Quality of Life Outcomes 2007, 5:8 (7 February 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

225.

Research   Open Access

Intron Evolution and Information processing in the DNA polymerase α gene in spirotrichous ciliates: A hypothesis for interconversion between DNA and RNA deletion

Wei-Jen Chang, Victoria M Addis, Anya J Li, Elin Axelsson, David H Ardell, Laura F Landweber Biology Direct 2007, 2:6 (1 February 2007)

Abstract | Full text | PDF | PubMed

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