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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at MD ANDERSON HOSPITAL

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	1.	Research Presence of anaplastic lymphoma kinase in inflammatory breast cancer Fredika M Robertson, Emanuel F Petricoin III, Steven J Van Laere, Francois Bertucci, Khoi Chu, Sandra V Fernandez, Zhaomei Mu, Katherine Alpaugh, Jianming Pei, Rita Circo, Julia Wulfkuhle, Zaiming Ye, Kimberly M Boley, Hui Liu, Ricardo Moraes, Xuejun Zhang, Ruggero DeMaria, Sanford H Barsky, Guoxian Sun, Massimo Cristofanilli SpringerPlus 2013, 2:497 (1 October 2013) Abstract \| Full text \| PDF
	2.	Research Integrative network-based Bayesian analysis of diverse genomics data Wenting Wang, Veerabhadran Baladandayuthapani, Chris C Holmes, Kim-Anh Do BMC Bioinformatics 2013, 14(Suppl 13):S8 (1 October 2013) Abstract \| Full text \| PDF
	3.	Research Bayesian methods for expression-based integration of various types of genomics data Elizabeth M Jennings, Jeffrey S Morris, Raymond J Carroll, Ganiraju C Manyam, Veerabhadran Baladandayuthapani EURASIP Journal on Bioinformatics and Systems Biology 2013, 2013:13 (21 September 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research Fractal-like kinetics of intracellular enzymatic reactions: a chemical framework of endotoxin tolerance and a possible non-specific contribution of macromolecular crowding to cross-tolerance Catalin Vasilescu, Mircea Olteanu, Paul Flondor, George A Calin Theoretical Biology and Medical Modelling 2013, 10:55 (14 September 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research Quinoline 3-sulfonamides inhibit lactate dehydrogenase A and reverse aerobic glycolysis in cancer cells Julia Billiard, Jennifer B Dennison, Jacques Briand, Roland S Annan, Deping Chai, Mariela Colón, Christopher S Dodson, Seth A Gilbert, Joel Greshock, Junping Jing, Hong Lu, Jeanelle E McSurdy-Freed, Lisa A Orband-Miller, Gordon B Mills, Chad J Quinn, Jessica L Schneck, Gilbert F Scott, Anthony N Shaw, Gregory M Waitt, Richard F Wooster, Kevin J Duffy Cancer & Metabolism 2013, 1:19 (6 September 2013) Abstract \| Full text \| PDF \| Editor’s summary Quinoline 3-sulfonamids were found to inhibit lactate dehydrogenease, a key driver of oncogenesis through altered cell metabolism, providing information about a potential new class of therapeutics.
	6.	Research article Cancer stem cell markers are enriched in normal tissue adjacent to triple negative breast cancer and inversely correlated with DNA repair deficiency Rachel L Atkinson, Wei T Yang, Daniel G Rosen, Melissa D Landis, Helen Wong, Michael T Lewis, Chad J Creighton, Krystal R Sexton, Sue G Hilsenbeck, Aysegul A Sahin, Abenaa M Brewster, Wendy A Woodward, Jenny C Chang Breast Cancer Research 2013, 15:R77 (4 September 2013) Abstract \| Provisional PDF \| PubMed
	7.	Research Expression of CD44v6 and integrin-β1 for the prognosis evaluation of pancreatic cancer patients after cryosurgery Gang Zhou, David Chiu, Dajiang Qin, Lizhi Niu, Jinlei Cai, Lihua He, Dongfeng Tan, Kecheng Xu Diagnostic Pathology 2013, 8:146 (2 September 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Research Status of the anaplastic lymphoma kinase (ALK) gene in inflammatory breast carcinoma Savitri Krishnamurthy, Wendy Woodward, Wei Yang, James M Reuben, James Tepperberg, Dai Ogura, Shin-ichiro Niwa, Lei Huo, Yun Gong, Randa El-Zein, Ana M Gonzalez-Angulo, Mariana Chavez-MacGregor, Ricardo Alvarez, Anthony Lucci, Vicente Valero, Naoto T Ueno SpringerPlus 2013, 2:409 (28 August 2013) Abstract \| Full text \| PDF
	9.	Research Tumor grafts derived from patients with head and neck squamous carcinoma authentically maintain the molecular and histologic characteristics of human cancers Shaohua Peng, Chad J Creighton, Yiqun Zhang, Banibrata Sen, Tuhina Mazumdar, Jeffery N Myers, Adrian Woolfson, Matthew V Lorenzi, Diana Bell, Michelle D Williams, Faye M Johnson Journal of Translational Medicine 2013, 11:198 (27 August 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Software BreakTrans: uncovering the genomic architecture of gene fusions Ken Chen, Nicholas E Navin, Yong Wang, Heather K Schmidt, John W Wallis, Beifang Niu, Xian Fan, Hao Zhao, Michael D Mclellan, Katherine A Hoadley, Elaine R Mardis, Timothy J Ley, Charles M Perou, Richard K Wilson, Li Ding Genome Biology 2013, 14:R87 (23 August 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary A new bioinformatic tool for the detection of cancer-related gene fusions and underlying genomic structural rearrangements
	11.	Research LKB1 is a central regulator of tumor initiation and pro-growth metabolism in ErbB2-mediated breast cancer Fanny Dupuy, Takla Griss, Julianna Blagih, Gäelle Bridon, Daina Avizonis, Chen Ling, Zhifeng Dong, Doris R Siwak, Matthew G Annis, Gordon B Mills, William J Muller, Peter M Siegel, Russell G Jones Cancer & Metabolism 2013, 1:18 (14 August 2013) Abstract \| Full text \| PDF \| Editor’s summary A new mouse model shows the mechanism by which LKB1 causes altered metabolism, apoptosis and tumour initiation in breast cancer.
	12.	Research Characterization of aberrant pathways across human cancers Antti Ylipää, Olli Yli-Harja, Wei Zhang, Matti Nykter BMC Systems Biology 2013, 7(Suppl 1):S1 (12 August 2013) Abstract \| Full text \| PDF
	13.	Research A pool of peptides extracted from wheat bud chromatin inhibits tumor cell growth by causing defective DNA synthesis Loretta Mancinelli, Teresa Secca, Paula M De Angelis, Francesco Mancini, Matteo Marchesini, Cristiano Marinelli, Lanfranco Barberini, Francesco Grignani Cell Division 2013, 8:11 (6 August 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Review Immunomodulation therapy with lenalidomide in follicular, transformed and diffuse large B cell lymphoma: current data on safety and efficacy Madhav Desai, Kate J Newberry, Jorge Romaguera, Liang Zhang, Zhishuo Ou, Michael Wang Journal of Hematology & Oncology 2013, 6:55 (2 August 2013) Abstract \| Full text \| PDF \| PubMed
	15.	Research Comprehensive characterization of malignant phyllodes tumor by whole genomic and proteomic analysis: biological implications for targeted therapy opportunities Denis Jardim, Anthony Conley, Vivek Subbiah Orphanet Journal of Rare Diseases 2013, 8:112 (30 July 2013) Abstract \| Full text \| PDF \| PubMed
	16.	Review Mining the mutanome: developing highly personalized Immunotherapies based on mutational analysis of tumors Willem W Overwijk, Ena Wang, Francesco M Marincola, Hans-Georg Rammensee, Nicholas P Restifo, Journal for ImmunoTherapy of Cancer 2013, 1:11 (29 July 2013) Abstract \| Full text \| PDF
	17.	Research article Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis Mohana Ray, Steve Goldstein, Shiguo Zhou, Konstantinos Potamousis, Deepayan Sarkar, Michael A Newton, Elizabeth Esterberg, Christina Kendziorski, Oliver Bogler, David C Schwartz BMC Genomics 2013, 14:505 (26 July 2013) Abstract \| Full text \| PDF \| PubMed
	18.	Research article APOBEC3 inhibits DEAD-END function to regulate microRNA activity Sara Ali, Namrata Karki, Chitralekha Bhattacharya, Rui Zhu, Donna A MacDuff, Mark D Stenglein, April J Schumacher, Zachary L Demorest, Reuben S Harris, Angabin Matin, Sita Aggarwal BMC Molecular Biology 2013, 14:16 (26 July 2013) Abstract \| Full text \| PDF \| PubMed
	19.	Research Predicted risks of radiogenic cardiac toxicity in two pediatric patients undergoing photon or proton radiotherapy Rui Zhang, Rebecca M Howell, Kenneth Homann, Annelise Giebeler, Phillip J Taddei, Anita Mahajan, Wayne D Newhauser Radiation Oncology 2013, 8:184 (23 July 2013) Abstract \| Full text \| PDF \| PubMed
	20.	Research *Assemblathon 2: evaluating de novo* methods of genome assembly in three vertebrate species** Keith R Bradnam, Joseph N Fass, Anton Alexandrov, Paul Baranay, Michael Bechner, Inanç Birol, Sébastien Boisvert, Jarrod A Chapman, Guillaume Chapuis, Rayan Chikhi, Hamidreza Chitsaz, Wen-Chi Chou, Jacques Corbeil, Cristian Del Fabbro, T Docking, Richard Durbin, Dent Earl, Scott Emrich, Pavel Fedotov, Nuno A Fonseca, Ganeshkumar Ganapathy, Richard A Gibbs, Sante Gnerre, Élénie Godzaridis, Steve Goldstein, Matthias Haimel, Giles Hall, David Haussler, Joseph B Hiatt, Isaac Y Ho et al. GigaScience 2013, 2:10 (22 July 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Assemblathon 2 is the largest systematic assessment of how the process of genome assembly is carried out, with 21 participating teams submitting 43 entries based on data from 3 different genomes
	21.	Review Bridging the clinical gaps: genetic, epigenetic and transcriptomic biomarkers for the early detection of lung cancer in the post-National Lung Screening Trial era John F Brothers, Kahkeshan Hijazi, Celine Mascaux, Randa A El-Zein, Margaret R Spitz, Avrum Spira BMC Medicine 2013, 11:168 (19 July 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Early detection of lung cancer is important so patients can be treated as soon as possible; Avrum Spira and colleagues review genetic and genomic biomarkers in development for early diagnosis, and discuss how they could reduce lung cancer deaths.
	22.	Research Association of tumor necrosis factor-alpha promoter variants with risk of HPV-associated oral squamous cell carcinoma Lei Jin, Erich M Sturgis, Yang Zhang, Zhigang Huang, Xicheng Song, Chao Li, Qingyi Wei, Guojun Li Molecular Cancer 2013, 12:80 (19 July 2013) Abstract \| Full text \| PDF \| PubMed
	23.	Research Intracerebroventricular administration of lipopolysaccharide induces indoleamine-2,3-dioxygenase-dependent depression-like behaviors Marcus A Lawson, Jennifer M Parrott, Robert H McCusker, Robert Dantzer, Keith W Kelley, Jason C O’Connor Journal of Neuroinflammation 2013, 10:87 (18 July 2013) Abstract \| Full text \| PDF \| PubMed
	24.	Research article Anesthesia management of patients undergoing hyperthermic isolated limb perfusion with melphalan for melanoma treatment: an analysis of 17 cases Heiner Ruschulte, Serena Shi, William W Tseng, Kerstin Kolodzie, Philip C Crawford, Darren B Schneider, Mohammed Kashani-Sabet, David Minor, Christian Apfel, Stanley PL Leong BMC Anesthesiology 2013, 13:15 (17 July 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Hemodynamic changes during melphalan hyperthermic isolated limb perfusion (HILP) as a treatment for unresectable melanoma pose a risk to patients with cardiac compromise, and justify establishing a standard scheme of monitoring, blood testing, and record keeping.
	25.	Research article Cholestasis induces reversible accumulation of periplakin in mouse liver Shinji Ito, Junko Satoh, Tsutomu Matsubara, Yatrik M Shah, Sung-hoon Ahn, Cherie R Anderson, Weiwei Shan, Jeffrey M Peters, Frank J Gonzalez BMC Gastroenterology 2013, 13:116 (13 July 2013) Abstract \| Full text \| PDF \| PubMed