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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Illinois at Urbana-Champaign

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226.

Research   Open Access

Spatially targeting Culex quinquefasciatus aquatic habitats on modified land cover for implementing an Integrated Vector Management (IVM) program in three villages within the Mwea Rice Scheme, Kenya

Benjamin G Jacob, Josephat Shililu, Ephantus J Muturi, Joseph M Mwangangi, Simon M Muriu, Jose Funes, John Githure, James L Regens, Robert J Novak International Journal of Health Geographics 2006, 5:18 (9 May 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

227.

Research article   Open Access

Exploring photosynthesis evolution by comparative analysis of metabolic networks between chloroplasts and photosynthetic bacteria

Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yuanyuan Li, Jing Hou, Yixue Li, Lei Liu BMC Genomics 2006, 7:100 (30 April 2006)

Abstract | Full text | PDF | PubMed

228.

Research article   Open Access

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison

Allan A Sioson, Shrinivasrao P Mane, Pinghua Li, Wei Sha, Lenwood S Heath, Hans J Bohnert, Ruth Grene BMC Bioinformatics 2006, 7:215 (20 April 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

229.

Research Article   Open Access

An Overview of DNA Microarray Grid Alignment and Foreground Separation Approaches

Peter Bajcsy EURASIP Journal on Advances in Signal Processing 2006, 2006:080163 (20 April 2006)

Abstract | Full text | PDF

230.

Research Article   Open Access

Accuracy Evaluation for Region Centroid-Based Registration of Fluorescent CLSM Imagery

Sang-Chul Lee, Peter Bajcsy, Amy Lin, Robert Folberg EURASIP Journal on Advances in Signal Processing 2006, 2006:082480 (21 March 2006)

Abstract | Full text | PDF

231.

Research   Open Access Highly Accessed

Landscape determinants and remote sensing of anopheline mosquito larval habitats in the western Kenya highlands

Emmanuel Mushinzimana, Stephen Munga, Noboru Minakawa, Li Li, Chen-chieh Feng, Ling Bian, Uriel Kitron, Cindy Schmidt, Louisa Beck, Guofa Zhou, Andrew K Githeko, Guiyun Yan Malaria Journal 2006, 5:13 (16 February 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A study which examines the landscape determinants of anopheline mosquito larval habitats and usefulness of remote sensing in identifying these habitats in western Kenya highlands, an area which has experienced several major malaria epidemics during the past two decades.

232.

Method   Open Access

A gold standard set of mechanistically diverse enzyme superfamilies

Shoshana D Brown, John A Gerlt, Jennifer L Seffernick, Patricia C Babbitt Genome Biology 2006, 7:R8 (31 January 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

A gold standard set of enzyme superfamilies, clustered according to sequence, structure and functional criteria, is presented.

233.

Research Article   Open Access

Learning-Based Nonparametric Image Super-Resolution

Shyamsundar Rajaram, Mithun Das Gupta, Nemanja Petrovic, Thomas S Huang EURASIP Journal on Advances in Signal Processing 2006, 2006:051306 (18 January 2006)

Abstract | Full text | PDF

234.

Research article   Open Access

Genomic analysis of a 1 Mb region near the telomere of Hessian fly chromosome X2 and avirulence gene vH13

Neil F Lobo, Susanta K Behura, Rajat Aggarwal, Ming-Shun Chen, Frank H Collins, Jeff J Stuart BMC Genomics 2006, 7:7 (16 January 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

235.

Research article   Open Access Highly Accessed

In silico discovery of human natural antisense transcripts

Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li BMC Bioinformatics 2006, 7:18 (13 January 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment |  Editor’s summary

In silico analysis that finds 568 human natural antisense transcripts, of which over 400 have not been reported before, also supports a connection between alternative splicing and antisense-directed regulation.

236.

Research article   Open Access

Increased synaptic microtubules and altered synapse development in Drosophila sec8 mutants

Faith LW Liebl, Kaiyun Chen, Julie Karr, Qi Sheng, David E Featherstone BMC Biology 2005, 3:27 (13 December 2005)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The neuromuscular junctions of sec8 knock-out fruit fly larvae have more branches and presynaptic terminals and an increased synaptic microtubule density, suggesting that this exocyst component controls synaptic microtubule formation, and is not required for neurite or synaptic terminal growth.

237.

Research article   Open Access

Targeted oligonucleotide-mediated microsatellite identification (TOMMI) from large-insert library clones

Kefei Chen, Christoph Knorr, Kirsten Bornemann-Kolatzki, Jun Ren, Lusheng Huang, Gary A Rohrer, Bertram Brenig BMC Genetics 2005, 6:54 (15 November 2005)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Targeted oligonucleotide-mediated microsatellite identification (TOMMI) has been used to isolate 17 porcine microsatellite markers from PAC clones, demonstrating that it is a promising isolation strategy for generating STS markers from large-insert libraries

238.

Research   Open Access Highly Accessed

Increase of mitochondrial DNA content and transcripts in early bovine embryogenesis associated with upregulation of mtTFA and NRF1 transcription factors

Pascale May-Panloup, Xavier Vignon, Marie-Françoise Chrétien, Yvan Heyman, Manoel Tamassia, Yves Malthièry, Pascal Reynier Reproductive Biology and Endocrinology 2005, 3:65 (14 November 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

239.

Research Article   Open Access

Surface integrals and harmonic functions

Yevgenya Movshovich Journal of Inequalities and Applications 2005, 2005:913098 (31 August 2005)

Abstract | Full text | PDF

240.

Review   Open Access Highly Accessed

Biofilm reactors for industrial bioconversion processes: employing potential of enhanced reaction rates

Nasib Qureshi, Bassam A Annous, Thaddeus C Ezeji, Patrick Karcher, Ian S Maddox Microbial Cell Factories 2005, 4:24 (25 August 2005)

Abstract | Full text | PDF | PubMed

241.

Research article   Open Access

Medical students who decompress during the M-1 year outperform those who fail and repeat it: A study of M-1 students at the University of Illinois College of Medicine at Urbana-Champaign 1988–2000

Susan M Kies, Gregory G Freund BMC Medical Education 2005, 5:18 (19 May 2005)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Students with academic difficulties in their first year of medical school who enter a program splitting the year over two calendar years before failing, out-perform students who fail and repeat the year, indicating a need for early intervention with struggling students.

242.

Research article   Open Access

A study of inter-lab and inter-platform agreement of DNA microarray data

Huixia Wang, Xuming He, Mark Band, Carole Wilson, Lei Liu BMC Genomics 2005, 6:71 (11 May 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

243.

Research   Open Access

Contribution of transcriptional regulation to natural variations in Arabidopsis

Wenqiong J Chen, Sherman H Chang, Matthew E Hudson, Wai-King Kwan, Jingqiu Li, Bram Estes, Daniel Knoll, Liang Shi, Tong Zhu Genome Biology 2005, 6:R32 (15 March 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Among five accessions 7,508 probe sets with no detectable genomic sequence variations were identified on the basis of the comparative genomic hybridization to the Arabidopsis GeneChip microarray, and used for accession-specific transcriptome analysis, identifying 60 genes that were differentially expressed in different accession backgrounds in an organ-dependent manner. Correlation analysis of expression patterns of these 7,508 genes between pairs of accessions identified a group of 65 highly plastic genes with distinct expression patterns in each accession.

244.

Research   Open Access

Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels

Asba Tasneem, Lakshminarayan M Iyer, Eric Jakobsson, L Aravind Genome Biology 2004, 6:R4 (20 December 2004)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Acetylcholine receptor type ligand-gated ion channels are well known in animals. Homologs are identified in prokaryotes that may act as chemotactic receptors.

245.

Software   Open Access

ESTIMA, a tool for EST management in a multi-project environment

Charu G Kumar, Richard LeDuc, George Gong, Levan Roinishivili, Harris A Lewin, Lei Liu BMC Bioinformatics 2004, 5:176 (4 November 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

246.

Research article   Open Access

Development of the time course for processing conflict: an event-related potentials study with 4 year olds and adults

M Rosario Rueda, Michael I Posner, Mary K Rothbart, Clintin P Davis-Stober BMC Neuroscience 2004, 5:39 (22 October 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

247.

Research   Open Access

Decrease of resistance to air flow with nasal strips as measured with the airflow perturbation device

Lily S Wong, Arthur T Johnson BioMedical Engineering OnLine 2004, 3:38 (22 October 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

248.

Research   Open Access

ImageParser: a tool for finite element generation from three-dimensional medical images

HM Yin, LZ Sun, G Wang, T Yamada, J Wang, MW Vannier BioMedical Engineering OnLine 2004, 3:31 (1 October 2004)

Abstract | Full text | PDF | PubMed

249.

Research article   Open Access

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant

Lila O Vodkin, Anupama Khanna, Robin Shealy, Steven J Clough, Delkin Gonzalez, Reena Philip, Gracia Zabala, Françoise Thibaud-Nissen, Mark Sidarous, Martina V Strömvik, Elizabeth Shoop, Christina Schmidt, Ernest Retzel, John Erpelding, Randy C Shoemaker, Alicia M Rodriguez-Huete, Joseph C Polacco, Virginia Coryell, Paul Keim, George Gong, Lei Liu, Jose Pardinas, Peter Schweitzer BMC Genomics 2004, 5:73 (29 September 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

250.

Research article   Open Access

Additional collection devices used in conjunction with the SurePath Liquid-Based Pap Test broom device do not enhance diagnostic utility

Sarah J Day, Darla L O'Shaughnessy, Jason C O'Connor, Gregory G Freund BMC Women's Health 2004, 4:6 (13 September 2004)

Abstract | Full text | PDF | PubMed |  Editor’s summary

The use of additional collection devices in conjunction with the SurePath Broom does not enhance the diagnostic utility of the SurePath Pap Test.

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