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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Illinois at Urbana-Champaign

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	1.	Research Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) Ray Ming, Robert VanBuren, Yanling Liu, Mei Yang, Yuepeng Han, Lei-Ting Li, Qiong Zhang, Min-Jeong Kim, Michael C Schatz, Michael Campbell, Jingping Li, John E Bowers, Haibao Tang, Eric Lyons, Ann A Ferguson, Giuseppe Narzisi, David R Nelson, Crysten E Blaby-Haas, Andrea R Gschwend, Yuannian Jiao, Joshua P Der, Fanchang Zeng, Jennifer Han, Xiang Jia Min, Karen A Hudson, Ratnesh Singh, Aleel K Grennan, Steven J Karpowicz, Jennifer R Watling, Kikukatsu Ito et al. Genome Biology 2013, 14:R41 (10 May 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary The genome of the long-living, slowly evolving sacred lotus reveals the genetic mechanisms underlying its adaptation to limited nutrient availability
	2.	Research article Real-time interactive data mining for chemical imaging information: application to automated histopathology David Mayerich, Michael Walsh, Matthew Schulmerich, Rohit Bhargava BMC Bioinformatics 2013, 14:156 (8 May 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research Interleukin-1 beta converting enzyme is necessary for development of depression-like behavior following intracerebroventricular administration of lipopolysaccharide to mice Marcus A Lawson, Robert H McCusker, Keith W Kelley Journal of Neuroinflammation 2013, 10:54 (1 May 2013) Abstract \| Full text \| PDF \| PubMed
	4.	Research Extranuclear ERα is associated with regression of T47D PKCα-overexpressing, tamoxifen-resistant breast cancer Bethany Perez White, Mary Ellen Molloy, Huiping Zhao, Yiyun Zhang, Debra A Tonetti Molecular Cancer 2013, 12:34 (1 May 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research article Validation of patient determined disease steps (PDDS) scale scores in persons with multiple sclerosis Yvonne C Learmonth, Robert W Motl, Brian M Sandroff, John H Pula, Diego Cadavid BMC Neurology 2013, 13:37 (25 April 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Research Trust mechanisms for cloud computing Jingwei Huang, David M Nicol Journal of Cloud Computing: Advances, Systems and Applications 2013, 2:9 (24 April 2013) Abstract \| Provisional PDF
	7.	Research article Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison Fang Yang, Nicholas Chia, Bryan A White, Lawrence B Schook BMC Bioinformatics 2013, 14:136 (23 April 2013) Abstract \| Full text \| PDF \| PubMed
	8.	Research article *Genomic deletion of CNGB3* is identical by descent in multiple canine breeds and causes achromatopsia** Connie Y Yeh, Orly Goldstein, Anna V Kukekova, Debbie Holley, Amy M Knollinger, Heather J Huson, Susan E Pearce-Kelling, Gregory M Acland, András M Komáromy BMC Genetics 2013, 14:27 (20 April 2013) Abstract \| Full text \| PDF \| PubMed
	9.	Research Land-use change and greenhouse gas emissions from corn and cellulosic ethanol Jennifer B Dunn, Steffen Mueller, Ho-young Kwon, Michael Q Wang Biotechnology for Biofuels 2013, 6:51 (10 April 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Research Follicle-stimulating hormone responsiveness in antral follicles from aryl hydrocarbon receptor knockout mice Isabel Hernández-Ochoa, Liying Gao, Jackye Peretz, Mallikarjuna S Basavarajappa, Stacey L Bunting, Bethany N Karman, Tessie Paulose, Jodi A Flaws Reproductive Biology and Endocrinology 2013, 11:26 (1 April 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Case Report Delayed ventricular septal rupture complicating acute inferior wall myocardial infarction Jae Hyung Cho, Srinivasan Sattiraju, Sanjay Mehta, Emil Missov BMC Research Notes 2013, 6:124 (28 March 2013) Abstract \| Full text \| PDF \| PubMed
	12.	Research Shedding LIGHT (TNFSF14) on the tumor microenvironment of colorectal cancer liver metastases Jian Zhong Qin, Vivek Upadhyay, Bellur Prabhakar, Ajay V Maker Journal of Translational Medicine 2013, 11:70 (20 March 2013) Abstract \| Full text \| PDF \| PubMed
	13.	Methodology article **In situ hybridization protocol for enhanced detection of gene expression in the planarian Schmidtea mediterranea** Ryan S King, Phillip A Newmark BMC Developmental Biology 2013, 13:8 (12 March 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Modification of multiple steps in in situ hybridization methods for the freshwater planarian Schmidtea mediterranea greatly increase signal detection and may prove useful for whole-mount fluorescent in situ hybridization (FISH) in other model organisms
	14.	Research Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta Stephen R Fairclough, Zehua Chen, Eric Kramer, Qiandong Zeng, Sarah Young, Hugh M Robertson, Emina Begovic, Daniel J Richter, Carsten Russ, M Jody Westbrook, Gerard Manning, B Franz Lang, Brian Haas, Chad Nusbaum, Nicole King Genome Biology 2013, 14:R15 (18 February 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary Genome sequencing of Salpingoeca rosetta reveals insights into the genome composition of the metazoan ancestor and the evolution of multicellularity
	15.	Research Looking at the label and beyond: the effects of calorie labels, health consciousness, and demographics on caloric intake in restaurants Brenna Ellison, Jayson L Lusk, David Davis International Journal of Behavioral Nutrition and Physical Activity 2013, 10:21 (8 February 2013) Abstract \| Full text \| PDF \| PubMed
	16.	Research Terrestrial vegetation and aquatic chemistry influence larval mosquito abundance in catch basins, Chicago, USA Allison M Gardner, Tavis K Anderson, Gabriel L Hamer, Dana E Johnson, Kate E Varela, Edward D Walker, Marilyn O Ruiz Parasites & Vectors 2013, 6:9 (11 January 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary This study tests the hypothesis that attributes of the biotic and abiotic environment contribute to spatial and temporal variation in production of West Nile virus vectors, Culex pipiens and Culex restuans, in Chicago, Illinois. Image: Roadside storm water catch basins are common larval mosquito habitats in urban ecosystems.
	17.	Proceedings TIGER: tiled iterative genome assembler Xiao-Long Wu, Yun Heo, Izzat El Hajj, Wen-Mei Hwu, Deming Chen, Jian Ma BMC Bioinformatics 2012, 13(Suppl 19):S18 (19 December 2012) Abstract \| Full text \| PDF \| PubMed
	18.	Methodology article Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE Yuliang Wang, James A Eddy, Nathan D Price BMC Systems Biology 2012, 6:153 (13 December 2012) Abstract \| Full text \| PDF \| PubMed
	19.	Research article Evidence for selection at HIV host susceptibility genes in a West Central African human population Kai Zhao, Yasuko Ishida, Taras K Oleksyk, Cheryl A Winkler, Alfred L Roca BMC Evolutionary Biology 2012, 12:237 (6 December 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary There are signatures of selection at several loci associated with resistance to HIV in the genomes of Biaka Western Pygmies, whose communities historically overlapped with the range of chimpanzee subspecies that carries the SIV strain ancestral to HIV-1.
	20.	Research article Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya Rishi Aryal, Xiaozeng Yang, Qingyi Yu, Ramanjulu Sunkar, Lei Li, Ray Ming BMC Genomics 2012, 13:682 (5 December 2012) Abstract \| Full text \| PDF \| PubMed
	21.	Research article Identification and characterization of alternative exon usage linked glioblastoma multiforme survival Ahmed Sadeque, Nicola VL Serão, Bruce R Southey, Kristin R Delfino, Sandra L Rodriguez-Zas BMC Medical Genomics 2012, 5:59 (4 December 2012) Abstract \| Full text \| PDF \| PubMed
	22.	Research article Genetic linkage maps for Asian and American lotus constructed using novel SSR markers derived from the genome of sequenced cultivar Mei Yang, Yanni Han, Robert VanBuren, Ray Ming, Liming Xu, Yuepeng Han, Yanling Liu BMC Genomics 2012, 13:653 (21 November 2012) Abstract \| Full text \| PDF \| PubMed
	23.	Research Intermittent fasting combined with calorie restriction is effective for weight loss and cardio-protection in obese women Monica C Klempel, Cynthia M Kroeger, Surabhi Bhutani, John F Trepanowski, Krista A Varady Nutrition Journal 2012, 11:98 (21 November 2012) Abstract \| Full text \| PDF \| PubMed
	24.	Poster presentation Protein distribution affects muscle mass based on differences in postprandial muscle protein synthesis and plasma leucine in rats Layne E Norton, Gabriel J Wilson, Donald K Layman, Chris J Moulton, Peter J Garlick Journal of the International Society of Sports Nutrition 2012, 9(Suppl 1):P23 (19 November 2012) Full text \| PDF
	25.	Research article First survey and functional annotation of prohormone and convertase genes in the pig Kenneth I Porter, Bruce R Southey, Jonathan V Sweedler, Sandra L Rodriguez-Zas BMC Genomics 2012, 13:582 (15 November 2012) Abstract \| Full text \| PDF \| PubMed