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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Illinois at Urbana-Champaign

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1.

Research article   Open Access

High-precision vision-based mobile augmented reality system for context-aware architectural, engineering, construction and facility management (AEC/FM) applications

Hyojoon Bae, Mani Golparvar-Fard, Jules White Visualization in Engineering 2013, 1:3 (13 June 2013)

Abstract | Full text | PDF

2.

Research article   Open Access

Haplotype analysis of sucrose synthase gene family in three Saccharum species

Jisen Zhang, Jie Arro, Youqiang Chen, Ray Ming BMC Genomics 2013, 14:314 (10 May 2013)

Abstract | Full text | PDF | PubMed

3.

Research   Open Access Highly Accessed

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ray Ming, Robert VanBuren, Yanling Liu, Mei Yang, Yuepeng Han, Lei-Ting Li, Qiong Zhang, Min-Jeong Kim, Michael C Schatz, Michael Campbell, Jingping Li, John E Bowers, Haibao Tang, Eric Lyons, Ann A Ferguson, Giuseppe Narzisi, David R Nelson, Crysten E Blaby-Haas, Andrea R Gschwend, Yuannian Jiao, Joshua P Der, Fanchang Zeng, Jennifer Han, Xiang Jia Min, Karen A Hudson, Ratnesh Singh, Aleel K Grennan, Steven J Karpowicz, Jennifer R Watling, Kikukatsu Ito et al. Genome Biology 2013, 14:R41 (10 May 2013)

Abstract | Provisional PDF | PubMed | F1000 Biology |  Editor’s summary

The genome of the long-living, slowly evolving sacred lotus reveals the genetic mechanisms underlying its adaptation to limited nutrient availability

4.

Research article   Open Access Highly Accessed

Real-time interactive data mining for chemical imaging information: application to automated histopathology

David Mayerich, Michael Walsh, Matthew Schulmerich, Rohit Bhargava BMC Bioinformatics 2013, 14:156 (8 May 2013)

Abstract | Full text | PDF | PubMed

5.

Research   Open Access

Interleukin-1 beta converting enzyme is necessary for development of depression-like behavior following intracerebroventricular administration of lipopolysaccharide to mice

Marcus A Lawson, Robert H McCusker, Keith W Kelley Journal of Neuroinflammation 2013, 10:54 (1 May 2013)

Abstract | Full text | PDF | PubMed

6.

Research   Open Access

Extranuclear ERα is associated with regression of T47D PKCα-overexpressing, tamoxifen-resistant breast cancer

Bethany Perez White, Mary Ellen Molloy, Huiping Zhao, Yiyun Zhang, Debra A Tonetti Molecular Cancer 2013, 12:34 (1 May 2013)

Abstract | Full text | PDF | PubMed

7.

Research article   Open Access

Validation of patient determined disease steps (PDDS) scale scores in persons with multiple sclerosis

Yvonne C Learmonth, Robert W Motl, Brian M Sandroff, John H Pula, Diego Cadavid BMC Neurology 2013, 13:37 (25 April 2013)

Abstract | Full text | PDF | PubMed

8.

Research   Open Access

Trust mechanisms for cloud computing

Jingwei Huang, David M Nicol Journal of Cloud Computing: Advances, Systems and Applications 2013, 2:9 (24 April 2013)

Abstract | Provisional PDF

9.

Research article   Open Access Highly Accessed

Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison

Fang Yang, Nicholas Chia, Bryan A White, Lawrence B Schook BMC Bioinformatics 2013, 14:136 (23 April 2013)

Abstract | Full text | PDF | PubMed

10.

Research article   Open Access

Genomic deletion of CNGB3 is identical by descent in multiple canine breeds and causes achromatopsia

Connie Y Yeh, Orly Goldstein, Anna V Kukekova, Debbie Holley, Amy M Knollinger, Heather J Huson, Susan E Pearce-Kelling, Gregory M Acland, András M Komáromy BMC Genetics 2013, 14:27 (20 April 2013)

Abstract | Full text | PDF | PubMed

11.

Research   Open Access

Land-use change and greenhouse gas emissions from corn and cellulosic ethanol

Jennifer B Dunn, Steffen Mueller, Ho-young Kwon, Michael Q Wang Biotechnology for Biofuels 2013, 6:51 (10 April 2013)

Abstract | Full text | PDF | PubMed

12.

Research   Open Access

Follicle-stimulating hormone responsiveness in antral follicles from aryl hydrocarbon receptor knockout mice

Isabel Hernández-Ochoa, Liying Gao, Jackye Peretz, Mallikarjuna S Basavarajappa, Stacey L Bunting, Bethany N Karman, Tessie Paulose, Jodi A Flaws Reproductive Biology and Endocrinology 2013, 11:26 (1 April 2013)

Abstract | Full text | PDF | PubMed

13.

Case Report   Open Access

Delayed ventricular septal rupture complicating acute inferior wall myocardial infarction

Jae Hyung Cho, Srinivasan Sattiraju, Sanjay Mehta, Emil Missov BMC Research Notes 2013, 6:124 (28 March 2013)

Abstract | Full text | PDF | PubMed

14.

Research   Open Access

Shedding LIGHT (TNFSF14) on the tumor microenvironment of colorectal cancer liver metastases

Jian Zhong Qin, Vivek Upadhyay, Bellur Prabhakar, Ajay V Maker Journal of Translational Medicine 2013, 11:70 (20 March 2013)

Abstract | Full text | PDF | PubMed

15.

Methodology article   Open Access Highly Accessed

In situ hybridization protocol for enhanced detection of gene expression in the planarian Schmidtea mediterranea

Ryan S King, Phillip A Newmark BMC Developmental Biology 2013, 13:8 (12 March 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Modification of multiple steps in in situ hybridization methods for the freshwater planarian Schmidtea mediterranea greatly increase signal detection and may prove useful for whole-mount fluorescent in situ hybridization (FISH) in other model organisms

16.

Research   Open Access

Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta

Stephen R Fairclough, Zehua Chen, Eric Kramer, Qiandong Zeng, Sarah Young, Hugh M Robertson, Emina Begovic, Daniel J Richter, Carsten Russ, M Jody Westbrook, Gerard Manning, B Franz Lang, Brian Haas, Chad Nusbaum, Nicole King Genome Biology 2013, 14:R15 (18 February 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Genome sequencing of Salpingoeca rosetta reveals insights into the genome composition of the metazoan ancestor and the evolution of multicellularity

17.

Research   Open Access Highly Accessed

Looking at the label and beyond: the effects of calorie labels, health consciousness, and demographics on caloric intake in restaurants

Brenna Ellison, Jayson L Lusk, David Davis International Journal of Behavioral Nutrition and Physical Activity 2013, 10:21 (8 February 2013)

Abstract | Full text | PDF | PubMed

18.

Research   Open Access

Terrestrial vegetation and aquatic chemistry influence larval mosquito abundance in catch basins, Chicago, USA

Allison M Gardner, Tavis K Anderson, Gabriel L Hamer, Dana E Johnson, Kate E Varela, Edward D Walker, Marilyn O Ruiz Parasites & Vectors 2013, 6:9 (11 January 2013)

Abstract | Full text | PDF | PubMed |  Editor’s summary

This study tests the hypothesis that attributes of the biotic and abiotic environment contribute to spatial and temporal variation in production of West Nile virus vectors, Culex pipiens and Culex restuans, in Chicago, Illinois. Image: Roadside storm water catch basins are common larval mosquito habitats in urban ecosystems.

19.

Proceedings   Open Access

TIGER: tiled iterative genome assembler

Xiao-Long Wu, Yun Heo, Izzat El Hajj, Wen-Mei Hwu, Deming Chen, Jian Ma BMC Bioinformatics 2012, 13(Suppl 19):S18 (19 December 2012)

Abstract | Full text | PDF | PubMed

20.

Methodology article   Open Access Highly Accessed

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

Yuliang Wang, James A Eddy, Nathan D Price BMC Systems Biology 2012, 6:153 (13 December 2012)

Abstract | Full text | PDF | PubMed

21.

Research article   Open Access Highly Accessed

Evidence for selection at HIV host susceptibility genes in a West Central African human population

Kai Zhao, Yasuko Ishida, Taras K Oleksyk, Cheryl A Winkler, Alfred L Roca BMC Evolutionary Biology 2012, 12:237 (6 December 2012)

Abstract | Full text | PDF | PubMed |  Editor’s summary

There are signatures of selection at several loci associated with resistance to HIV in the genomes of Biaka Western Pygmies, whose communities historically overlapped with the range of chimpanzee subspecies that carries the SIV strain ancestral to HIV-1.

22.

Research article   Open Access Highly Accessed

Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya

Rishi Aryal, Xiaozeng Yang, Qingyi Yu, Ramanjulu Sunkar, Lei Li, Ray Ming BMC Genomics 2012, 13:682 (5 December 2012)

Abstract | Full text | PDF | PubMed

23.

Research article   Open Access

Identification and characterization of alternative exon usage linked glioblastoma multiforme survival

Ahmed Sadeque, Nicola VL Serão, Bruce R Southey, Kristin R Delfino, Sandra L Rodriguez-Zas BMC Medical Genomics 2012, 5:59 (4 December 2012)

Abstract | Full text | PDF | PubMed

24.

Research article   Open Access Highly Accessed

Genetic linkage maps for Asian and American lotus constructed using novel SSR markers derived from the genome of sequenced cultivar

Mei Yang, Yanni Han, Robert VanBuren, Ray Ming, Liming Xu, Yuepeng Han, Yanling Liu BMC Genomics 2012, 13:653 (21 November 2012)

Abstract | Full text | PDF | PubMed

25.

Research   Open Access Highly Accessed

Intermittent fasting combined with calorie restriction is effective for weight loss and cardio-protection in obese women

Monica C Klempel, Cynthia M Kroeger, Surabhi Bhutani, John F Trepanowski, Krista A Varady Nutrition Journal 2012, 11:98 (21 November 2012)

Abstract | Full text | PDF | PubMed

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