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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Illinois at Urbana-Champaign

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	1.	Research *Effects of supplementary butyrate on butanol production and the metabolic switch in Clostridium beijerinckii* NCIMB 8052: genome-wide transcriptional analysis with RNA-Seq** Yi Wang, Xiangzhen Li, Hans P Blaschek Biotechnology for Biofuels 2013, 6:138 (27 September 2013) Abstract \| Full text \| PDF
	2.	Research article Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle Nick VL Serão, Dianelys González-Peña, Jonathan E Beever, Dan B Faulkner, Bruce R Southey, Sandra L Rodriguez-Zas BMC Genetics 2013, 14:94 (25 September 2013) Abstract \| Full text \| PDF \| PubMed
	3.	Research article Model of gene expression in extreme cold - reference transcriptome for the high-Antarctic cryopelagic notothenioid fish Pagothenia borchgrevinki Kevin T Bilyk, C-H Cheng BMC Genomics 2013, 14:634 (21 September 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Comparative transcriptome analysis of the Antarctic fish P. Borchgrevinki, identifies genes involved in cold adaptation and provides insight into the evolution of molecular mechanisms for fish survival in different water temperatures - an important feature during climate change.
	4.	Research Exercise reduces activation of microglia isolated from hippocampus and brain of aged mice Rachel A Kohman, Tushar K Bhattacharya, Elzbieta Wojcik, Justin S Rhodes Journal of Neuroinflammation 2013, 10:114 (18 September 2013) Abstract \| Full text \| PDF \| PubMed
	5.	Research article Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes James R Doroghazi, William W Metcalf BMC Genomics 2013, 14:611 (11 September 2013) Abstract \| Full text \| PDF \| PubMed
	6.	Case Report Squamous cell carcinoma of the bladder in a female associated with multiple bladder stones Jae Cho, Jean L Holley BMC Research Notes 2013, 6:354 (4 September 2013) Abstract \| Full text \| PDF \| PubMed
	7.	Research Automated identification of animal species in camera trap images Xiaoyuan Yu, Jiangping Wang, Roland Kays, Patrick A Jansen, Tianjiang Wang, Thomas Huang EURASIP Journal on Image and Video Processing 2013, 2013:52 (4 September 2013) Abstract \| Full text \| PDF
	8.	Research An improved autocidal gravid ovitrap for the control and surveillance of Aedes aegypti Andrew J Mackay, Manuel Amador, Roberto Barrera Parasites & Vectors 2013, 6:225 (6 August 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary We developed an Autocidal Gravid Ovitrap (AGO) for the surveillance and control of Ae. aegypti. In field evaluations, our improved trap design (AGO-B) operated for more than 8 weeks without servicing, with a greater sensitivity and precision than conventional ovitraps. Image: The improved design of the Autocidal Gravid Ovitrap (AGO-B).
	9.	Research Pyocyanin-induced mucin production is associated with redox modification of FOXA2 Yonghua Hao, Zhizhou Kuang, Ying Xu, Brent E Walling, Gee W Lau Respiratory Research 2013, 14:82 (5 August 2013) Abstract \| Full text \| PDF \| PubMed
	10.	Research Intracerebroventricular administration of lipopolysaccharide induces indoleamine-2,3-dioxygenase-dependent depression-like behaviors Marcus A Lawson, Jennifer M Parrott, Robert H McCusker, Robert Dantzer, Keith W Kelley, Jason C O’Connor Journal of Neuroinflammation 2013, 10:87 (18 July 2013) Abstract \| Full text \| PDF \| PubMed
	11.	Research article Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq Md Shamimuzzaman, Lila Vodkin BMC Genomics 2013, 14:477 (16 July 2013) Abstract \| Full text \| PDF \| PubMed
	12.	Research article Empirical assessment of a RGB-D sensor on motion capture and action recognition for construction worker monitoring SangUk Han, Madhav Achar, SangHyun Lee, Feniosky Peña-Mora Visualization in Engineering 2013, 1:6 (9 July 2013) Abstract \| Full text \| PDF
	13.	Research *Investigating host dependence of xylose utilization in recombinant Saccharomyces cerevisiae* strains using RNA-seq analysis** Xueyang Feng, Huimin Zhao Biotechnology for Biofuels 2013, 6:96 (6 July 2013) Abstract \| Full text \| PDF \| PubMed
	14.	Methodology article *The environmental-data automated track annotation (Env-DATA) system: linking animal tracks with environmental data* Somayeh Dodge, Gil Bohrer, Rolf Weinzierl, Sarah C Davidson, Roland Kays, David Douglas, Sebastian Cruz, Jiawei Han, David Brandes, Martin Wikelski Movement Ecology 2013, 1:3 (3 July 2013) Abstract \| Full text \| PDF \| Editor’s summary This article presents a new publicly available system, Environmental-Data Automated Track Annotation (ENv-DATA), that automates annotation of movement trajectories with ambient atmospheric observations and underlying landscape information from global remote sensing, weather, and ecosystem products. End-DATA facilitates new understanding and predictive capabilities of spatiotemporal patterns of animal movement in response to dynamic and changing environments from local to global scales.
	15.	Research Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production Carrie S Thurber, Justin M Ma, Race H Higgins, Patrick J Brown Genome Biology 2013, 14:R68 (26 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Comprehensive marker coverage of sorghum conversion lines and their progenitors allows identification of candidate loci regulating agronomic traits of interest
	16.	Research *Directed evolution of a cellobiose utilization pathway in Saccharomyces cerevisiae* by simultaneously engineering multiple proteins** Dawn T Eriksen, Pei Chiun Hsieh, Patrick Lynn, Huimin Zhao Microbial Cell Factories 2013, 12:61 (26 June 2013) Abstract \| Full text \| PDF \| PubMed
	17.	Research article Functional microbial diversity explains groundwater chemistry in a pristine aquifer Theodore M Flynn, Robert A Sanford, Hodon Ryu, Craig M Bethke, Audrey D Levine, Nicholas J Ashbolt, Jorge W Santo Domingo BMC Microbiology 2013, 13:146 (24 June 2013) Abstract \| Full text \| PDF \| PubMed
	18.	Research Hidden hysteresis – population dynamics can obscure gene network dynamics Phillip Poisson, Kaustubh D Bhalerao Journal of Biological Engineering 2013, 7:16 (24 June 2013) Abstract \| Full text \| PDF \| PubMed
	19.	Research article High-precision vision-based mobile augmented reality system for context-aware architectural, engineering, construction and facility management (AEC/FM) applications Hyojoon Bae, Mani Golparvar-Fard, Jules White Visualization in Engineering 2013, 1:3 (13 June 2013) Abstract \| Full text \| PDF
	20.	Research article *Phylogenetic analysis of symbionts in feather-feeding lice of the genus Columbicola: evidence for repeated symbiont replacements* Wendy A Smith, Kelly F Oakeson, Kevin P Johnson, David L Reed, Tamar Carter, Kari L Smith, Ryuichi Koga, Takema Fukatsu, Dale H Clayton, Colin Dale BMC Evolutionary Biology 2013, 13:109 (31 May 2013) Abstract \| Full text \| PDF \| PubMed
	21.	Research article *Haplotype analysis of sucrose synthase gene family in three Saccharum* species** Jisen Zhang, Jie Arro, Youqiang Chen, Ray Ming BMC Genomics 2013, 14:314 (10 May 2013) Abstract \| Full text \| PDF \| PubMed
	22.	Research *Genome of the long-living sacred lotus (Nelumbo nucifera* Gaertn.)** Ray Ming, Robert VanBuren, Yanling Liu, Mei Yang, Yuepeng Han, Lei-Ting Li, Qiong Zhang, Min-Jeong Kim, Michael C Schatz, Michael Campbell, Jingping Li, John E Bowers, Haibao Tang, Eric Lyons, Ann A Ferguson, Giuseppe Narzisi, David R Nelson, Crysten E Blaby-Haas, Andrea R Gschwend, Yuannian Jiao, Joshua P Der, Fanchang Zeng, Jennifer Han, Xiang Min, Karen A Hudson, Ratnesh Singh, Aleel K Grennan, Steven J Karpowicz, Jennifer R Watling, Kikukatsu Ito et al. Genome Biology 2013, 14:R41 (10 May 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| f1000 \| Editor’s summary The genome of the long-living, slowly evolving sacred lotus reveals the genetic mechanisms underlying its adaptation to limited nutrient availability
	23.	Research article Real-time interactive data mining for chemical imaging information: application to automated histopathology David Mayerich, Michael Walsh, Matthew Schulmerich, Rohit Bhargava BMC Bioinformatics 2013, 14:156 (8 May 2013) Abstract \| Full text \| PDF \| PubMed
	24.	Research Interleukin-1 beta converting enzyme is necessary for development of depression-like behavior following intracerebroventricular administration of lipopolysaccharide to mice Marcus A Lawson, Robert H McCusker, Keith W Kelley Journal of Neuroinflammation 2013, 10:54 (1 May 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25.	Research Extranuclear ERα is associated with regression of T47D PKCα-overexpressing, tamoxifen-resistant breast cancer Bethany Perez White, Mary Ellen Molloy, Huiping Zhao, Yiyun Zhang, Debra A Tonetti Molecular Cancer 2013, 12:34 (1 May 2013) Abstract \| Full text \| PDF \| PubMed