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Work published with BioMed Central, Chemistry Central and SpringerOpen by researchers at University of Helsinki

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1.

Study protocol   Open Access

The International Study of Childhood Obesity, Lifestyle and the Environment (ISCOLE): design and methods

Peter T Katzmarzyk, Tiago V Barreira, Stephanie T Broyles, Catherine M Champagne, Jean-Philippe Chaput, Mikael Fogelholm, Gang Hu, William D Johnson, Rebecca Kuriyan, Anura Kurpad, Estelle V Lambert, Carol Maher, José Maia, Victor Matsudo, Tim Olds, Vincent Onywera, Olga L Sarmiento, Martyn Standage, Mark S Tremblay, Catrine Tudor-Locke, Pei Zhao, Timothy S Church BMC Public Health 2013, 13:900 (30 September 2013)

Abstract | Full text | PDF | PubMed

2.

Research article   Open Access

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter de Bruijn, Kerry S Burton, Michael P Challen, Pedro M Coutinho, Daniel C Eastwood, Birgit S Gruben, Miia R Mäkelä, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P de Vries BMC Genomics 2013, 14:663 (30 September 2013)

Abstract | Provisional PDF | PubMed

3.

Proceedings   Open Access

Automated segmentation of blood cells in Giemsa stained digitized thin blood films

Margarita Walliander, Riku Turkki, Nina Linder, Mikael Lundin, Juho Konsti, Ville Ojansivu, Taru Meri, Ville Holmberg, Johan Lundin Diagnostic Pathology 2013, 8(Suppl 1):S37 (30 September 2013)

Abstract | Full text | PDF

4.

Proceedings   Open Access

An open-source, MATLAB based annotation tool for virtual slides

Riku Turkki, Margarita Walliander, Ville Ojansivu, Nina Linder, Mikael Lundin, Johan Lundin Diagnostic Pathology 2013, 8(Suppl 1):S30 (30 September 2013)

Abstract | Full text | PDF

5.

Proceedings   Open Access

Automated classification of breast cancer morphology in histopathological images

Ville Ojansivu, Nina Linder, Esa Rahtu, Matti Pietikäinen, Mikael Lundin, Heikki Joensuu, Johan Lundin Diagnostic Pathology 2013, 8(Suppl 1):S29 (30 September 2013)

Abstract | Full text | PDF

6.

Proceedings   Open Access

Teachers’ impact on dental students’ exam scores in teaching pathology of the oral cavity using WSI

Janusz Szymas, Mikael Lundin, Johan Lundin Diagnostic Pathology 2013, 8(Suppl 1):S25 (30 September 2013)

Abstract | Full text | PDF

7.

Poster presentation   Open Access

The role of SorLA in neurotrophic activity and complex behavior

Simon Glerup, Mart Saarma, Anders Nykjaer Molecular Neurodegeneration 2013, 8(Suppl 1):P19 (13 September 2013)

Full text | PDF

8.

Short report   Open Access

Discovery of novel plastid phenylalanine (trnF) pseudogenes defines a distinctive clade in Solanaceae

Péter Poczai, Jaakko Hyvönen SpringerPlus 2013, 2:459 (12 September 2013)

Abstract | Full text | PDF

9.

Original research   Open Access

Factors correlating with delayed trauma center admission following traumatic brain injury

Rahul Raj, Jari Siironen, Riku Kivisaari, Markku Kuisma, Tuomas Brinck, Jaakko Lappalainen, Markus B Skrifvars Scandinavian Journal of Trauma, Resuscitation and Emergency Medicine 2013, 21:67 (10 September 2013)

Abstract | Full text | PDF | PubMed

10.

Research   Open Access Highly Accessed

The Arctic AβPP mutation leads to Alzheimer’s disease pathology with highly variable topographic deposition of differentially truncated Aβ

Hannu Kalimo, Maciej Lalowski, Nenad Bogdanovic, Ola Philipson, Thomas D Bird, David Nochlin, Gerard D Schellenberg, RoseMarie Brundin, Tommie Olofsson, Rabah Soliymani, Marc Baumann, Oliver Wirths, Thomas A Bayer, Lars NG Nilsson, Hans Basun, Lars Lannfelt, Martin Ingelsson Acta Neuropathologica Communications 2013, 1:60 (10 September 2013)

Abstract | Full text | PDF |  Editor’s summary

The Arctic AβPP mutation leads to Alzheimer ́s disease pathology; however, special characteristics are observed within the human brain including parenchymal deposits composed of non-fibrillar, Congo negative Aβ aggregates.

11.

Research article   Open Access

The contribution of health policy and care to income differences in life expectancy – a register based cohort study

Kristiina Manderbacka, Riina Peltonen, Sonja Lumme, Ilmo Keskimäki, Lasse Tarkiainen, Pekka Martikainen BMC Public Health 2013, 13:812 (8 September 2013)

Abstract | Full text | PDF | PubMed

12.

Research article   Open Access

Bat rabies surveillance in Finland

Tiina Nokireki, Anita Huovilainen, Thomas Lilley, Eeva-Maria Kyheröinen, Christine Ek-Kommonen, Liisa Sihvonen, Miia Jakava-Viljanen BMC Veterinary Research 2013, 9:174 (8 September 2013)

Abstract | Full text | PDF | PubMed

13.

Research   Open Access

N-truncated Abeta starting with position four: early intraneuronal accumulation and rescue of toxicity using NT4X-167, a novel monoclonal antibody

Gregory Antonios, Nasrin Saiepour, Yvonne Bouter, Bernhard C Richard, Anders Paetau, Auli Verkkoniemi-Ahola, Lars Lannfelt, Martin Ingelsson, Gabor G Kovacs, Thierry Pillot, Oliver Wirths, Thomas A Bayer Acta Neuropathologica Communications 2013, 1:56 (6 September 2013)

Abstract | Full text | PDF

14.

Meeting abstract   Open Access

Social workers’ and their clients’ attitudes concerning control of alcohol use

Elina Renko Addiction Science & Clinical Practice 2013, 8(Suppl 1):A56 (4 September 2013)

Full text | PDF

15.

Research article   Open Access

The relative importance of competition and predation in environment characterized by resource pulses – an experimental test with a microbial community

Teppo Hiltunen, Jouni Laakso BMC Ecology 2013, 13:29 (3 September 2013)

Abstract | Full text | PDF

16.

Research   Open Access Highly Accessed

Occurrence and characterization of methicillin-resistant staphylococci from bovine mastitis milk samples in Finland

Veera Gindonis, Suvi Taponen, Anna-Liisa Myllyniemi, Satu Pyörälä, Suvi Nykäsenoja, Saara Salmenlinna, Laura Lindholm, Merja Rantala Acta Veterinaria Scandinavica 2013, 55:61 (28 August 2013)

Abstract | Full text | PDF | PubMed

17.

Research   Open Access

Fc-gamma receptor polymorphisms as predictive and prognostic factors in patients receiving oncolytic adenovirus treatment

Mari Hirvinen, Raita Heiskanen, Minna Oksanen, Saila Pesonen, Ilkka Liikanen, Timo Joensuu, Anna Kanerva, Vincenzo Cerullo, Akseli Hemminki Journal of Translational Medicine 2013, 11:193 (21 August 2013)

Abstract | Full text | PDF | PubMed

18.

Research article   Open Access Highly Accessed

Idiopathic pulmonary fibrosis - a systematic review on methodology for the collection of epidemiological data

Jaana Kaunisto, Eija-Riitta Salomaa, Ulla Hodgson, Riitta Kaarteenaho, Marjukka Myllärniemi BMC Pulmonary Medicine 2013, 13:53 (20 August 2013)

Abstract | Full text | PDF | PubMed

19.

Research   Open Access Highly Accessed

Hyperoxemia and long-term outcome after traumatic brain injury

Rahul Raj, Stepani Bendel, Matti Reinikainen, Riku Kivisaari, Jari Siironen, Maarit Lång, Markus Skrifvars Critical Care 2013, 17:R177 (19 August 2013)

Abstract | Full text | PDF | PubMed | f1000

20.

Research   Open Access

TBX6, LHX1 and copy number variations in the complex genetics of Müllerian aplasia

Maria Sandbacka, Hannele Laivuori, Érika Freitas, Mervi Halttunen, Varpu Jokimaa, Laure Morin-Papunen, Carla Rosenberg, Kristiina Aittomäki Orphanet Journal of Rare Diseases 2013, 8:125 (16 August 2013)

Abstract | Full text | PDF | PubMed

21.

Research article   Open Access

Transdifferentiation of pancreatic cells by loss of contact-mediated signaling

Walter de Back, Roland Zimm, Lutz Brusch BMC Systems Biology 2013, 7:77 (13 August 2013)

Abstract | Full text | PDF | PubMed

22.

Research   Open Access

Identification of genetic markers with synergistic survival effect in cancer

Riku Louhimo, Marko Laakso, Tuomas Heikkinen, Susanna Laitinen, Pekka Manninen, Vladimir Rogojin, Minna Miettinen, Carl Blomqvist, Jianjun Liu, Heli Nevanlinna, Sampsa Hautaniemi BMC Systems Biology 2013, 7(Suppl 1):S2 (12 August 2013)

Abstract | Full text | PDF

23.

Software   Open Access Highly Accessed

GOParGenPy: a high throughput method to generate Gene Ontology data matrices

Ajay Kumar, Liisa Holm, Petri Toronen BMC Bioinformatics 2013, 14:242 (8 August 2013)

Abstract | Full text | PDF | PubMed

24.

Research article   Open Access

Biological and other health related correlates of long-term life dissatisfaction burden

Teemu Rissanen, Soili M Lehto, Jukka Hintikka, Kirsi Honkalampi, Tarja Saharinen, Heimo Viinamäki, Heli Koivumaa-Honkanen BMC Psychiatry 2013, 13:202 (1 August 2013)

Abstract | Full text | PDF | PubMed

25.

Research   Open Access

Label-free mass spectrometry proteome quantification of human embryonic kidney cells following 24 hours of sialic acid overproduction

Ville I Parviainen, Sakari Joenväärä, Niina Tohmola, Risto Renkonen Proteome Science 2013, 11:38 (1 August 2013)

Abstract | Full text | PDF | PubMed

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