1.
Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria
Dmitry
A
Ravcheev,
Aaron
A
Best,
Natalia
V
Sernova,
Marat
D
Kazanov,
Pavel
S
Novichkov,
Dmitry
A
Rodionov
BMC Genomics 2013, 14 :94 (12 February 2013)
Abstract | Provisional PDF
| PubMed
2.
Virion stiffness regulates immature HIV-1 entry
Hong-Bo
Pang,
Liron
Hevroni,
Nitzan
Kol,
Debra
M
Eckert,
Marianna
Tsvitov,
Michael
S
Kay,
Itay
Rousso
Retrovirology 2013, 10 :4 (10 January 2013)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A linkage between particle stiffness and viral entry activity illustrates a novel level of regulation for viral replication.
3.
Enhancement of mouse sperm motility by trophinin-binding peptide
Seong
Park,
Jiwon
Yoon,
Ling
Wang,
Toshiaki
K
Shibata,
Khatereh
Motamedchaboki,
Kyung
Shim,
Mun
Chang,
Seung
Lee,
Naoaki
Tamura,
Shingo
Hatakeyama,
Daita
Nadano,
Kazuhiro
Sugihara,
Michiko
N
Fukuda
Reproductive Biology and Endocrinology 2012, 10 :101 (29 November 2012)
Abstract | Full text | PDF | PubMed
4.
Reversal by RARα agonist Am580 of c-Myc-induced imbalance in RARα /RARγ expression during MMTV-Myc tumorigenesis
Almudena
Bosch,
Silvina
P
Bertran,
Yongke
Lu,
Avalon
Garcia,
Alexis
M
Jones,
Marcia
I
Dawson,
Eduardo
F
Farias
Breast Cancer Research 2012, 14 :R121 (24 August 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
5.
Cell proliferation along vascular islands during microvascular network growth
Molly
R
Kelly-Goss,
Erica
R
Winterer,
Peter
C
Stapor,
Ming
Yang,
Richard
S
Sweat,
William
B
Stallcup,
Geert
W
Schmid-Schönbein,
Walter
L
Murfee
BMC Physiology 2012, 12 :7 (21 June 2012)
Abstract | Full text | PDF | PubMed
6.
Sorting nexin 12 interacts with BACE1 and regulates BACE1-mediated APP processing
Yonghao
Zhao,
Yunshu
Wang,
Jiaye
Yang,
Xin
Wang,
Yingjun
Zhao,
Xian
Zhang,
Yun-wu
Zhang
Molecular Neurodegeneration 2012, 7 :30 (18 June 2012)
Abstract | Full text | PDF | PubMed
7.
OA02.01. Effect of macronutrient composition of weight loss diets on reduction of the inflammatory marker hsCRP
J
Nicklas,
F
Sacks,
S
Smith,
M
LeBoff,
J
Rood,
G
Bray,
P
Ridker
BMC Complementary and Alternative Medicine 2012, 12 (Suppl 1):O5 (12 June 2012)
Full text | PDF
8.
Immunodominant fragments of myelin basic protein initiate T cell-dependent pain
Huaqing
Liu,
Sergey
A
Shiryaev,
Andrei
V
Chernov,
Youngsoon
Kim,
Igor
Shubayev,
Albert
G
Remacle,
Svetlana
Baranovskaya,
Vladislav
S
Golubkov,
Alex
Y
Strongin,
Veronica
I
Shubayev
Journal of Neuroinflammation 2012, 9 :119 (7 June 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
9.
Reversal of transforming growth factor-β induced epithelial-to-mesenchymal transition and the ZEB proteins
Shreyasi
Das,
Bryan
N
Becker,
F Michael
Hoffmann,
Janet
E
Mertz
Fibrogenesis & Tissue Repair 2012, 5 (Suppl 1):S28 (6 June 2012)
Abstract | Full text | PDF
10.
“Tasting” fructose with pancreatic beta-cells: modulation of insulin release by sweet taste receptor signaling and its role in metabolic diseases
George
A
Kyriazis,
Kathleen
R
Mosure,
Mangala
M
Soundarapandian,
Richard
E
Pratley,
Björn
Tyrberg
BMC Proceedings 2012, 6 (Suppl 3):P29 (1 June 2012)
Full text | PDF
11.
Sex differences in human adipose tissues – the biology of pear shape
Kalypso
Karastergiou,
Steven
R
Smith,
Andrew
S
Greenberg,
Susan
K
Fried
Biology of Sex Differences 2012, 3 :13 (31 May 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
12.
Early vascular deficits are correlated with delayed mammary tumorigenesis in the MMTV-PyMT transgenic mouse following genetic ablation of the NG2 proteoglycan
Krissa
Gibby,
Weon-Kyoo
You,
Kuniko
Kadoya,
Hildur
Helgadottir,
Lawrence
JT
Young,
Lesley
G
Ellies,
Yunchao
Chang,
Robert
D
Cardiff,
William
B
Stallcup
Breast Cancer Research 2012, 14 :R67 (24 April 2012)
Abstract | Full text | PDF | PubMed
13.
Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast
Daniel
H
Lackner,
Michael
W
Schmidt,
Shuangding
Wu,
Dieter
A
Wolf,
Jürg
Bähler
Genome Biology 2012, 13 :R25 (18 April 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Changes in transcription and translation are measured in fission yeast exposed to different stresses to elucidate layers of gene expression control
14.
Identifying an APP-binding protein in neuronal cell death
Yunwu
Zhang,
Huaxi
Xu
Molecular Neurodegeneration 2012, 7 (Suppl 1):L22 (7 February 2012)
Full text | PDF | PubMed
15.
Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR
Hansook
Chong,
Jacob
Biesinger,
Young-Kyo
Seo,
Xiaohui
Xie,
Timothy
F
Osborne
BMC Genomics 2012, 13 :51 (1 February 2012)
Abstract | Full text | PDF | PubMed
16.
Predicting outcomes of steady-state 13 C isotope tracing experiments using Monte Carlo sampling
Jan
Schellenberger,
Daniel
C
Zielinski,
Wing
Choi,
Sunthosh
Madireddi,
Vasiliy
Portnoy,
David
A
Scott,
Jennifer
L
Reed,
Andrei
L
Osterman,
Bernhard
∅
Palsson
BMC Systems Biology 2012, 6 :9 (30 January 2012)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
A new Monte Carlo sampling algorithm determines the capability of 13C labeling experiments to resolve fluxes in metabolic networks, and is demonstrated on an E. coli isotopomer model to determine reaction fluxes.
17.
Reduced inflammation accompanies diminished myelin damage and repair in the NG2 null mouse spinal cord
Karolina
Kucharova,
Yunchao
Chang,
Andrej
Boor,
Voon
Yong,
William
B
Stallcup
Journal of Neuroinflammation 2011, 8 :158 (13 November 2011)
Abstract | Full text | PDF | PubMed
18.
The docking protein p130Cas regulates cell sensitivity to proteasome inhibition
Ming
Zhao,
Kristiina
Vuori
BMC Biology 2011, 9 :73 (28 October 2011)
Abstract | Full text | PDF | PubMed
19.
Detailed kinetics and regulation of mammalian 2-oxoglutarate dehydrogenase
Feng
Qi,
Ranjan
K
Pradhan,
Ranjan
K
Dash,
Daniel
A
Beard
BMC Biochemistry 2011, 12 :53 (26 September 2011)
Abstract | Full text | PDF | PubMed
20.
Chromatin regulated interchange between polycomb repressive complex 2 (PRC2)-Ezh2 and PRC2-Ezh1 complexes controls myogenin activation in skeletal muscle cells
Lovorka
Stojic,
Zuzana
Jasencakova,
Carolina
Prezioso,
Alexandra
Stützer,
Beatrice
Bodega,
Diego
Pasini,
Rebecca
Klingberg,
Chiara
Mozzetta,
Raphael
Margueron,
Pier
Puri,
Dirk
Schwarzer,
Kristian
Helin,
Wolfgang
Fischle,
Valerio
Orlando
Epigenetics & Chromatin 2011, 4 :16 (5 September 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
21.
Nef-mediated enhancement of cellular activation and human immunodeficiency virus type 1 replication in primary T cells is dependent on association with p21-activated kinase 2
Kevin
C
Olivieri,
Joya
Mukerji,
Dana
Gabuzda
Retrovirology 2011, 8 :64 (5 August 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Nef-mediated enhancement of cellular activation and viral replication in primary T cells is dependent on PAK2 and on the strength of the activating stimuli, and correlates with the ability of Nef to associate with PAK2. PAK2 is likely to play a role in Nef-mediated enhancement of viral replication and immune activation in vivo.
22.
GPS-Prot: A web-based visualization platform for integrating host-pathogen interaction data
Marie
E
Fahey,
Melanie
J
Bennett,
Cathal
Mahon,
Stefanie
Jäger,
Lars
Pache,
Dhiraj
Kumar,
Alex
Shapiro,
Kanury
Rao,
Sumit
K
Chanda,
Charles
S
Craik,
Alan
D
Frankel,
Nevan
J
Krogan
BMC Bioinformatics 2011, 12 :298 (22 July 2011)
Abstract | Full text | PDF | PubMed
23.
Correction: Dermatan sulfate in tunicate phylogeny: Order-specific sulfation pattern and the effect of [→4IdoA(2-Sulfate)β -1→3GalNAc(4-Sulfate)β -1→] motifs in dermatan sulfate on heparin cofactor II activity
Eliene
O
Kozlowski,
Paula
C
Lima,
Cristina
P
Vicente,
Tito
Lotufo,
Xingfeng
Bao,
Kazuyuki
Sugahara,
Mauro
SG
Pavão
BMC Biochemistry 2011, 12 :37 (13 July 2011)
Abstract | Full text | PDF | PubMed
24.
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
Dmitry
A
Rodionov,
Pavel
S
Novichkov,
Elena
D
Stavrovskaya,
Irina
A
Rodionova,
Xiaoqing
Li,
Marat
D
Kazanov,
Dmitry
A
Ravcheev,
Anna
V
Gerasimova,
Alexey
E
Kazakov,
Galina
Kovaleva,
Elizabeth
A
Permina,
Olga
N
Laikova,
Ross
Overbeek,
Margaret
F
Romine,
James
K
Fredrickson,
Adam
P
Arkin,
Inna
Dubchak,
Andrei
L
Osterman,
Mikhail
S
Gelfand
BMC Genomics 2011, 12 (Suppl 1):S3 (15 June 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
25.
Dermatan sulfate in tunicate phylogeny: Order-specific sulfation pattern and the effect of [→4IdoA(2-Sulfate)β -1→3GalNAc(4-Sulfate)β -1→] motifs in dermatan sulfate on heparin cofactor II activity
Eliene
O
Kozlowski,
Paula
C
Lima,
Cristina
P
Vicente,
Tito
Lotufo,
Xingfeng
Bao,
Kazuyuki
Sugahara,
Mauro
SG
Pavão
BMC Biochemistry 2011, 12 :29 (29 May 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central