# ####################################################
# brownmove definition file fora protein of two 
# displaced vdW spheres, one of which is sticky
# 
# Tihamer Geyer, 2011
# ####################################################


Protein Doppel
    position    0.0 0.0 0.0   0.0 1.0 0.0 0.0
    D0 1.2e-4   # effective D_trans (unused)
    
    Gestalt DG
        position    0.0 0.0 0.0  0.0 1.0 0.0 0.0
        # diffuses like a sphere of radius 2nm and relative density 1.1 
        # (=> m = 18 kDa, LD propagation)
        #  D_trans  D_rot    mass  radius
        D0  1.2e-4  2.26e-5  18.0  2.0
        
        VdwShape VS
            # two spheres displaced and with different colors
            # attraction between color pairs 0-0 is set in the 
            # simulation definition file (=> vdw params)
            0.5 0.0 0.0   1.7   0
            -0.5 0.0 0.0  1.7   1
        End
    End
End