Table S1. Key to organism acronyms and sequence identifiers
|
|
| Abbreviation* |
Organism |
TyrA
gi number |
TyrR
gi number |
|
| Aact |
Actinobacillus actinomycetemcomitans |
NA |
NA |
| ACIN* |
Acinetobacter sp. |
50085330 |
NA |
| ANAB* |
Anabaena sp. |
17228636 |
NA |
| ANAB* |
Anabaena sp. |
17227914 |
NA |
| Atha* |
Arabidopsis thaliana |
16903100 |
NA |
| Aful_1* |
Archaeoglobus fulgidus |
11497843 |
NA |
| Atum* |
Agrobacterium tumefaciens |
17937318 |
NA |
| Avin |
Azotobacter vinelandii |
53612601 |
NA |
| Bant* |
Bacillis anthracis |
21400838 |
NA |
| Bcer* |
Bacillus cereus |
30021055 |
NA |
| Bhal_2* |
Bacillus halodurans |
15614229 |
NA |
| Bste |
Bacillus stearothermophilus |
NA |
NA |
| Bsub* |
Bacillis subtilis |
16079318 |
NA |
| Bthu* |
Bacillus thuringiensis israelensis |
49479572 |
NA |
| Blon_1* |
Bifidobacterium longum |
23465944 |
NA |
| Bflo* |
Blochmannia floridanus |
33519649 |
NA |
| Bbro |
Bordetella bronchisepticus |
NA |
NA |
| Bcep* |
Burkholderia cepacia |
NA |
NA |
| Bfun_1 |
Burkholderia fungorum
|
48784756
|
NA
|
| Bmal* |
Burkholderia mallei
|
53724789
|
NA
|
| Bpse_6* |
Burkholderia pseudomallei |
53720127 |
NA |
| Cjej* |
Campylobacter jejuni |
15791518 |
NA |
| Cvio* |
Chromobacterium violaceum
|
34104714 |
NA
|
| Ceff* |
Corynebacterium efficiens
|
25026751
|
NA
|
| Cglu_1* |
Corynebacterium glutamicum |
19551477 |
NA |
| Ddes |
Desulfovibrio desulfuricans
|
53692015
|
NA
|
| Dvul* |
Desulfovibrio vulgaris |
|
|
| Dace_5 |
Desulfuromonas acetoxidans
|
NA
|
NA
|
| Efae_1* |
Enterococcus faecalis |
12407966 |
NA |
| Efae |
Enterococcus faecium |
22991440 |
NA |
| Ecar* |
Erwinia carotovora |
50122273 |
50120916 |
| Ecol_1* |
Escherichia coli |
26248963 |
25301105 |
| Gmet |
Geobacter metallireducens
|
48846797
|
NA
|
| Gsul* |
Geobacter sulfurreducens
|
39997701 |
NA
|
| Gvio* |
Gloeobacter violaceus
|
37519975 |
NA
|
| Hinf* |
Haemophilus influenzae |
16273204 |
16272359 |
| Hhep* |
Helicobacter hepaticus
|
32262543
|
NA
|
| Hpyl* |
Helicobacter pylori |
15645990 |
NA |
| Kpne |
Klebsiella pneumoniae |
NA |
NA |
| Lesc |
Lycopersicon esculentum |
NA |
NA |
| Linn* |
Listeria innocua |
16801104 |
NA |
| Lmon* |
Listeria monocytogenes |
16803963 |
NA |
| Lcor_3 |
Lotus corniculatus var. japonicus
|
NA
|
NA
|
| Mthe_7* |
Methanothermobacter thermoautotrophicus |
15679635 |
NA |
| Mjan |
Methanococcus jannaschii |
15668793 |
NA |
| Mkan_1* |
Methanopyrus kandleri AV19 |
20094235 |
NA |
| Mbar |
Methanosarcina barkeri |
23051388 |
NA |
| Mdeg |
Microbulbifer degradans |
23026646 |
NA |
| Mtub* |
Mycobacterium tuberculosis |
15843374 |
NA |
| Mxan |
Myxococcus xanthus
|
NA
|
NA
|
| Ngon |
Neisseria gonorrhoeae |
NA |
NA |
| Neur* |
Nitrosomonas europaea |
22954363 |
NA |
| Npun_1 |
Nostoc punctiforme |
23124347 |
NA |
| Npun_1 |
Nostoc punctiforme |
23128268 |
NA |
| Naro |
Novosphingomonas aromaticivorans |
23108542 |
NA |
| Oihe* |
Oceanobacillus iheyensis HTE831
|
23099236
|
NA
|
| Osat* |
Oryza sativa ssp. japonica |
NA |
NA |
| Pagg |
Pantoea agglomerans |
267186 |
7388342 |
| Pmul* |
Pasteurella multocida |
15602529 |
12721224 |
| Plum* |
Photorhabdus luminescens
|
37525230 |
37526471
|
| Plum* |
Photorhabdus luminescens
|
37527434 |
NA |
| Pmar_3* |
Prochlorococcus marinus CCMP1378 MED4 |
33862121 |
NA |
| Pmar_10* |
Prochlorococcus marinus MIT9313 |
33863991 |
NA |
| Paer_1* |
Pseudomonas aeruginosa |
15598360 |
NA |
| Pflu |
Pseudomonas fluorescens |
23061127 |
NA |
| Pput* |
Pseudomonas putida |
26988501 |
NA |
| Pstu |
Pseudomonas stutzeri |
5712093 |
NA |
| Reut |
Ralstonia eutropha |
NA |
NA |
| Rsol* |
Ralstonia solanacearum |
17545625 |
NA |
| Rcap |
Rhodobacter capsulatus |
NA |
NA |
| Rsph |
Rhodobacter sphaeroides |
22957104 |
NA |
| Rpal* |
Rhodopseudomonas palustris |
22961616 |
NA |
| Rrub_1 |
Rhodospirillum rubrum |
22967332 |
NA |
| Scer* |
Saccharomyces cerevisiae |
6319643 |
NA |
| Styp_1* |
Salmonella typhimurium |
16765984 |
16420210 |
| Spom* |
Schizosaccharomyces pombe |
19076029 |
NA |
| Sput |
Shewanella putrefaciens |
NA |
NA |
| Saur_2* |
Staphylococcus aureus |
21282981 |
NA |
| Sgor |
Streptococcus gordonii |
NA |
NA |
| Spne* |
Streptococcus pneumoniae |
15903274 |
NA |
| Scoe_1* |
Streptomyces coelicolor |
24413756 |
NA |
| Scoe_1* |
Streptomyces coelicolor |
7481118 |
NA |
| Spri |
Streptomyces pristinaespiralis |
1575337 |
NA |
| Stoy* |
Streptomyces toyocaensis
|
21911427
|
NA
|
| Ssol* |
Sulfolobus solfataricus
|
15897245
|
NA
|
| SYNE_1* |
Synechococcus sp. WH8102 |
33866590 |
NA |
| SYNE |
Synechococcus sp. PCC7002 |
NA |
NA |
| SYNE_3* |
Synechocystis sp. PCC6803 |
16330562 |
NA |
| Telo* |
Thermosynechococcus elongatus
|
22299978
|
NA
|
| Tfer_1 |
Thiobacillus ferrooxidans
|
NA
|
NA
|
| Tery |
Trichodesmium erythraeum
|
48892373
|
NA
|
| Vcho* |
Vibrio cholerae |
15640715 |
15641320 |
| Vpar_2* |
Vibrio parahaemolyticus
|
28897321 |
28898643
|
| Wsuc* |
Wolinella succinogenes
|
34556783 |
NA
|
| Xcam* |
Xanthomonas campestris |
21230932 |
NA
|
| Xfas* |
Xylella fastidiosa (almond strain) |
28199252 |
NA
|
| Yent |
Yersinia enterocolitica |
NA |
NA |
| Ypes* |
Yersinia pestis KIM
|
22124813
|
NA
|
| Zmob* |
Zymomonas mobilis |
56551316 |
NA |
|
* Complete genomes are indicated by asterisks.
|