Pollack et al. Shadeo and Lam Jong et al. Manual hybridization Automated hybridization Calling lower threshold upper threshold lower threshold upper threshold lower threshold upper threshold lower threshold upper threshold lower threshold upper threshold Gain (1) 0.25 ~ 0.25 ~ 0.3 ~ 0.3 ~ 0.15 ~ Unchanged (0) -0.25 0.25 -0.25 0.25 -0.3 0.3 -0.3 0.3 -0.15 0.15 Heterozygous loss (-1) -0.8 -0.25 -1.0 -0.25 -1.0 -0.3 -1.2 -0.3 -0.6 -0.15 Homozygous loss (-2) ~ -0.8 ~ -1.0 ~ -1.0 ~ -1.2 ~ -0.6 Chromosome Start End Log2 Ratio Call Chromosome Start End Log2 Ratio Call Chromosome Start End Log2 Ratio Call Chromosome Start End Log2 Ratio Call Chromosome Start End Log2 Ratio Call 1 12227 10050000 0.09 0 1 133950 3740300 0.17 0 1 794320 9675300 0.0 0 1 200000 39339000 -0.1 0 1 200000 200050 0.4 1 1 10748000 38208000 -0.15 0 1 3775400 3775400 1.69 1 1 9723000 39893000 -0.1 0 1 40080000 113340000 0.1 0 1 3284800 38322000 0.0 0 1 38613000 149160000 0.08 0 1 3789200 9383700 0.15 0 1 39924000 115960000 0.0 0 1 115080000 115080000 1.0 1 1 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