Filename AVG_MAPPING_QUALITY MIN_MAPPING_QUALITY MAX_MAPPING_QUALITY MAPPING_QUALITY_MINIMUM_PEARSONS_CORRELATION MAPPING_QUALITY_MAXIMUM_PEARSONS_CORRELATION MAPPING_QUALITY_AVERAGE_PEARSONS_CORRELATION MAPPING_QUALITY_CLOSEST_TO_ZERO_CORRELATION COVERAGE_MINIMUM_PEARSONS_CORRELATION COVERAGE_MAXIMUM_PEARSONS_CORRELATION COVERAGE_AVERAGE_PEARSONS_CORRELATION COVERAGE_CLOSEST_TO_ZERO_CORRELATION OutputRandChrom_ALL OutputMappingRatio_ALL_ANY_RATIO_UNMAPPED_TO_MAPPED OutputMappingRatio_ALL_ANY_RATIO_UNMAPPED_TO_MAPPED_DECIMAL OutputMappingRatio_ALL_ANY_DECIMAL_UNMAPPED_TO_MAPPED OutputMappingRatio_ALL_ANY_UNMAPPED_COUNT OutputMappingRatio_ALL_ANY_MAPPED_COUNT OutputMappingRatio_ALL_MATE_RATIO_UNMAPPED_TO_MAPPED OutputMappingRatio_ALL_MATE_RATIO_UNMAPPED_TO_MAPPED_DECIMAL OutputMappingRatio_ALL_MATE_DECIMAL_UNMAPPED_TO_MAPPED OutputMappingRatio_ALL_MATE_UNMAPPED_COUNT OutputMappingRatio_ALL_MATE_MAPPED_COUNT OutputMappingRatio_ALL_QUERY_RATIO_UNMAPPED_TO_MAPPED OutputMappingRatio_ALL_QUERY_RATIO_UNMAPPED_TO_MAPPED_DECIMAL OutputMappingRatio_ALL_QUERY_DECIMAL_UNMAPPED_TO_MAPPED OutputMappingRatio_ALL_QUERY_UNMAPPED_COUNT OutputMappingRatio_ALL_QUERY_MAPPED_COUNT AVG_COVERAGE MIN_COVERAGE MAX_COVERAGE SV_ESTIMATED_MINIMUM_POPULATION_SIZE SV_ESTIMATED_MAXIMUM_POPULATION_SIZE SV_ESTIMATED_AVERAGE_POPULATION_SIZE PASSED_PassFailFileStructure PASSED_PassFailValidateSequence PASSED_PassFailValidateReadGroups TCGA-04-1331-01A-01W-0486-08 80.99290232 0 99 0.998421519 0.998421519 0.998421519 0.998421519 0.999955418 0.999955418 0.999955418 0.999955418 chr4_random 4:01 4 2.45E-07 73624921 17345405 5:01 5 2.93E-07 74971813 15998513 5:01 5 2.93E-07 74971816 15998510 3.043764994 0.076 1113522.968 n/a n/a n/a 1 1 1 TCGA-04-1331-10A-01W-0486-08 82.61472129 0 99 0.998470738 0.998470738 0.998470738 0.998470738 0.999918159 0.999918159 0.999918159 0.999918159 5:01 5 3.24E-07 71274542 14828710 5:01 5 3.67E-07 72094225 14009027 5:01 5 3.67E-07 72094225 14009027 2.912183059 0.076 1002390.144 n/a n/a n/a 1 1 1 TCGA-04-1341-10A-01W-0487-08 80.4188071 0 99 0.969886214 0.998150723 0.983182056 0.969886214 0.990299585 0.999971966 0.996492636 0.990299585 chr2_random 6:01 6 2.00E-07 155231722 27890024 6:01 6 2.52E-07 158092119 25029627 6:01 6 2.52E-07 158092113 25029633 5.849192465 0.076 1684861.936 16.07360679 16.07360679 16.07360679 1 1 1 TCGA-04-1342-01A-01W-0486-08 69.81571892 0 99 0.902303959 0.99772987 0.947257969 0.902303959 0.997400295 0.999991886 0.9991125 0.997400295 chr2_random 1:01 1 1.07E-08 132896259 111193925 1:01 1 1.54E-08 146451208 97638976 1:01 1 1.54E-08 146451199 97638985 6.951650214 0.076 6390386.736 6.11936161 6.11936161 6.11936161 1 1 1 TCGA-04-1356-01A-01W-0492-08 77.438965 0 99 0.983983655 0.997951549 0.98893111 0.983983655 0.960973172 0.999978237 0.974535537 0.960973172 chr6_random 2:01 2 3.14E-08 81065211 50773961 2:01 2 3.66E-08 83941034 47898138 2:01 2 3.66E-08 83941029 47898143 4.359095234 0.076 3421696.32 -28.20299478 n/a -28.20299478 1 1 1 TCGA-04-1357-01A-01W-0492-08 73.0839398 0 99 0.967101633 0.997439331 0.982905019 0.967101633 0.977687692 0.999780768 0.993546994 0.977687692 chr6_random 2:01 2 3.07E-08 132331884 65605256 2:01 2 3.81E-08 137818358 60118782 3:01 3 7.10E-08 151700202 46236938 6.135302833 0.076 3097035.264 -166.0444098 56.53860437 -42.89634713 1 1 1 TCGA-04-1367-01A-01W-0492-08 74.73200449 0 99 0.925332879 0.997848288 0.97320836 0.925332879 0.811364791 0.999956849 0.966788402 0.811364791 chr21_random 2:01 2 1.59E-08 164550561 101854800 2:01 2 1.84E-08 170320512 96084849 3:01 3 5.41E-08 204850120 61555241 8.21772813 0.043 4201501.44 10.70704303 197.6939463 80.9833868 1 1 1 TCGA-04-1371-01A-01W-0492-08 70.21201457 0 99 0.895138973 0.998173721 0.954121564 0.895138973 0.990663819 0.999996731 0.9967108 0.990663819 chr4_random 1:01 1 8.87E-09 78372584 112718793 1:01 1 9.44E-09 85103315 105988062 2:01 2 2.78E-08 124278978 66812399 5.318930102 0.043 4534535.612 24.94702905 24.94702905 24.94702905 1 1 1 TCGA-06-0145-01A-01W-0224-08 65.04201069 0 99 0.993066336 0.996985941 0.995035003 0.993066336 0.999987555 0.999998981 0.999993387 0.999987555 chr6_random 1:06 0.166666667 4.26E-09 41745465 234755027 1:04 0.25 4.49E-09 53726140 222774352 1:04 0.25 4.49E-09 53726127 222774365 9.823453672 0.076 16020320.44 n/a n/a n/a 1 1 1 TCGA-06-0145-10A-01W-0224-08 87.66316455 0 99 0.9976195 0.99903841 0.998346129 0.9976195 0.999979565 0.999998331 0.999989067 0.999979565 chr6_random 1:01 1 1.31E-08 170423308 113955318 2:01 2 1.38E-08 172409519 111969107 2:01 2 1.38E-08 172409519 111969107 8.476283016 0.076 8358700.096 n/a n/a n/a 1 1 1 TCGA-06-0152-01A-02W-0323-08 86.75375183 0 99 0.997811184 0.998754785 0.998279208 0.997811184 0.999585218 0.999931467 0.99976426 0.999585218 chr5_random 8:01 8 4.65E-07 133598511 16955957 9:01 9 5.92E-07 135432249 15122219 9:01 9 5.92E-07 135432246 15122222 5.591353186 0.076 1009924.784 n/a n/a n/a 1 1 1 TCGA-06-0152-10A-01W-0323-08 79.41260066 0 99 0.985065394 0.998638701 0.99122891 0.985065394 0.982569754 0.999766031 0.992038048 0.982569754 chr4_random 1:01 1 7.88E-09 100123953 126892532 1:01 1 7.93E-09 100962512 126053973 4:01 4 9.00E-08 182047990 44968495 8.737662009 0.076 3610530.686 n/a n/a n/a 1 1 1 TCGA-06-0185-01A-01W-0254-08 57.45408414 0 99 0.976068012 0.986101239 0.979517872 0.976068012 0.999994632 0.999998912 0.999997305 0.999994632 chr6_random 1:19 0.052631579 4.23E-09 12478456 236203954 1:13 0.076923077 4.32E-09 17372053 231310357 1:13 0.076923077 4.32E-09 17372053 231310357 16.92069968 0.076 17207673.76 n/a n/a n/a 1 1 1 TCGA-06-0185-10B-01W-0254-08 86.67837657 0 99 0.998127679 0.998684385 0.998373428 0.998127679 0.999999723 0.999999958 0.99999984 0.999999723 chr21_random 1:02 0.5 5.18E-09 78357353 192891799 1:02 0.5 5.21E-09 79349637 191899515 1:02 0.5 5.21E-09 79349640 191899512 8.929011452 0.076 14508949.33 n/a n/a n/a 1 1 1 TCGA-06-0188-01A-01W-0254-08 68.65995438 0 99 0.872886043 0.995012187 0.934641143 0.872886043 0.973901239 0.999999973 0.990149933 0.973901239 chr4_random 1:03 0.333333333 5.40E-09 73117750 185173081 1:02 0.5 5.47E-09 75387239 182903592 1:02 0.5 5.76E-09 84611964 173678867 32.68469864 0.076 13027112.73 -6.168393222 n/a -6.168393222 1 1 1 TCGA-06-0188-10B-01W-0254-08 69.58787065 0 99 0.746885877 0.996986388 0.888748485 0.746885877 0.979233948 0.99999998 0.992362784 0.979233948 chr21_random 1:02 0.5 5.21E-09 79061281 191789996 1:02 0.5 5.28E-09 81301489 189549788 1:02 0.5 5.61E-09 92569503 178281774 36.11730542 0.076 13379159.02 4.161738052 4.161738052 4.161738052 1 1 1 TCGA-06-0192-01B-01W-0348-08 68.29048206 0 99 0.694606117 0.998147614 0.84926288 0.694606117 0.935620651 0.999771038 0.975293949 0.935620651 chr21_random 4:01 4 8.96E-08 201430542 47425034 5:01 5 1.19E-07 207115063 41740513 5:01 5 1.19E-07 207115065 41740511 6.487780683 0.038 2359568.846 15.06339585 15.06339585 15.06339585 1 1 1 TCGA-06-0192-10A-01W-0348-08 71.20403922 0 99 0.66695972 0.998223127 0.837452877 0.66695972 0.991727545 0.99999607 0.996608198 0.991727545 chr5_random 3:01 3 3.93E-08 277803321 84069979 4:01 4 4.72E-08 284287760 77585540 4:01 4 4.72E-08 284287757 77585543 9.49696785 0.038 5067980.157 10.07106062 10.07106062 10.07106062 1 1 1 TCGA-06-0648-01A-01W-0323-08 86.49796464 0 99 0.998053405 0.999007351 0.998674812 0.998053405 0.999978084 0.999998738 0.999987213 0.999978084 chr6_random 4:01 4 7.45E-08 172722831 48163595 4:01 4 8.53E-08 175525166 45361260 4:01 4 8.53E-08 175525161 45361265 7.307527039 0.076 3234478.68 n/a n/a n/a 1 1 1 TCGA-06-0648-10A-01W-0323-08 81.09212142 0 99 0.994847278 0.99816575 0.996469001 0.994847278 0.999830373 0.999982148 0.999910465 0.999830373 chr6_random 3:01 3 6.77E-08 160419403 48664607 4:01 4 1.16E-07 170662657 38421353 4:01 4 1.16E-07 170662652 38421358 7.541238404 0.076 2141535.904 n/a n/a n/a 1 1 1 TCGA-06-0649-01B-01W-0348-08 66.83219069 0 99 0.700682976 0.997862007 0.855008503 0.700682976 0.980230449 0.999999296 0.991895529 0.980230449 chr5_random 2:01 2 2.09E-08 206889067 99559681 2:01 2 2.38E-08 212050459 94398289 2:01 2 2.38E-08 212050456 94398292 8.30656492 0.038 6483550.576 5.769229474 5.769229474 5.769229474 1 1 1 TCGA-06-0649-10A-01W-0348-08 72.52385542 0 99 0.684712671 0.998506969 0.847451428 0.684712671 0.990497407 0.999996413 0.996021265 0.990497407 chr21_random 4:01 4 4.18E-08 300510073 84837725 4:01 4 4.77E-08 305372148 79975650 4:01 4 4.77E-08 305372145 79975653 10.02907916 0.038 5317480.448 14.92087293 14.92087293 14.92087293 1 1 1 TCGA-06-0686-01A-01W-0348-08 81.44791166 0 99 0.819842182 0.998798187 0.892285933 0.819842182 0.955279683 0.99956028 0.980537422 0.955279683 chr6_random 4:01 4 9.18E-08 219831988 48931166 5:01 5 1.10E-07 223761303 45001851 5:01 5 1.10E-07 223761307 45001847 7.821450322 0.064 3064972.98 -20.56593339 n/a -20.56593339 1 1 1 TCGA-06-0686-10A-01W-0348-08 83.64017353 0 99 0.821208347 0.999193858 0.893250734 0.821208347 0.974780931 0.999996601 0.987476709 0.974780931 chr4_random 7:01 7 2.08E-07 224838802 32897504 8:01 8 2.49E-07 227527468 30208838 8:01 8 2.49E-07 227527472 30208834 7.278227798 0.064 2030313.388 -15.78709107 n/a -15.78709107 1 1 1 TCGA-06-0745-01A-01W-0348-08 83.26633466 0 99 0.840956922 0.99827712 0.914858606 0.840956922 0.956054365 0.999992 0.977656263 0.956054365 chr1_random 7:01 7 2.34E-07 182791766 27965330 8:01 8 3.14E-07 186378236 24378860 8:01 8 3.14E-07 186378238 24378858 6.350473641 0.076 1580221.488 29.04303075 29.04303075 29.04303075 1 1 1 TCGA-06-0745-10A-01W-0348-08 84.99040313 0 99 0.834485055 0.99828118 0.900806569 0.834485055 0.98407276 0.999998314 0.99093451 0.98407276 chr21_random 4:01 4 6.84E-08 254288958 60963902 4:01 4 7.85E-08 257920106 57332754 4:01 4 7.85E-08 257920118 57332742 9.001116671 0.076 4081321.144 -24.25086828 n/a -24.25086828 1 1 1 TCGA-06-0747-01A-01W-0348-08 85.28083086 0 99 0.838714147 0.997899054 0.903615994 0.838714147 0.959241943 0.999994264 0.977470856 0.959241943 chr4_random 8:01 8 2.85E-07 208130345 27041413 9:01 9 3.51E-07 210665810 24505948 9:01 9 3.51E-07 210665815 24505943 6.908095743 0.076 1669756.328 9.558909549 9.558909549 9.558909549 1 1 1 TCGA-06-0747-10A-01W-0348-08 85.0231765 0 99 0.833894504 0.998988472 0.900391876 0.833894504 0.980300805 0.999546397 0.989715003 0.980300805 chr21_random 5:01 5 8.12E-08 251831550 55682952 5:01 5 9.46E-08 255539371 51975131 5:01 5 9.46E-08 255539367 51975135 8.788765258 0.076 3668315.864 -21.12329199 n/a -21.12329199 1 1 1 TCGA-06-0749-01A-01W-0348-08 76.93333846 0 99 0.71580481 0.998711352 0.846207451 0.71580481 0.932375841 0.999947209 0.974636753 0.932375841 chr5_random 3:01 3 3.72E-08 223803519 77543967 4:01 4 5.80E-08 237382494 63964992 4:01 4 5.80E-08 237382463 63965023 8.455830184 0.076 3829339.648 -25.35772966 35.94922441 0.490556504 1 1 1 TCGA-06-0749-10A-01W-0348-08 76.65686012 0 99 0.687177461 0.999475799 0.827962294 0.687177461 0.983598613 0.999994426 0.991184046 0.983598613 chr4_random 2:01 2 2.45E-08 248670033 100703567 3:01 3 3.97E-08 267288679 82084921 3:01 3 3.97E-08 267288688 82084912 9.598946127 0.076 4823436.216 -21.40594137 15.55636958 -0.995223627 1 1 1 TCGA-06-0875-01A-01W-0424-08 81.71870364 0 99 0.996491258 0.998347675 0.99740034 0.996491258 0.999472427 0.999996917 0.999656028 0.999472427 chr4_random 6:01 6 2.67E-07 149426384 23639298 7:01 7 3.27E-07 151537112 21528570 7:01 7 3.27E-07 151537120 21528562 7.094439762 0.076 1475755.384 n/a n/a n/a 1 1 1 TCGA-06-0875-10A-01W-0424-08 73.74082424 0 99 0.883045621 0.997788704 0.934540116 0.883045621 0.993104513 0.999999577 0.997004352 0.993104513 chr4_random 2:01 2 1.63E-08 228230847 118270618 2:01 2 1.81E-08 233121260 113380205 3:01 3 4.20E-08 266804648 79696817 10.1481723 0.076 5685286.704 6.999171266 6.999171266 6.999171266 1 1 1 TCGA-06-0876-01A-01W-0424-08 72.06268533 0 99 0.903348568 0.997218352 0.944396385 0.903348568 0.97724767 0.999742728 0.991060365 0.97724767 chr6_random 2:01 2 1.87E-08 199927616 103460147 2:01 2 2.28E-08 207839150 95548613 3:01 3 5.16E-08 235779088 67608675 8.853040673 0.076 4536982.716 4.35266851 4.35266851 4.35266851 1 1 1 TCGA-06-0876-10A-01W-0424-08 73.96468119 0 99 0.89730352 0.997708503 0.941050374 0.89730352 0.988756979 0.999997606 0.995386315 0.988756979 chr6_random 2:01 2 1.95E-08 236262102 109965901 2:01 2 2.14E-08 240213499 106014504 4:01 4 4.79E-08 271019916 75208087 9.888232473 0.076 5415508.44 9.913297682 9.913297682 9.913297682 1 1 1 TCGA-06-0877-01A-01W-0424-08 79.46541862 0 99 0.890398006 0.998226419 0.933566546 0.890398006 0.990887147 0.999998787 0.99472137 0.990887147 chr21_random 4:01 4 5.70E-08 255575051 66971235 4:01 4 6.92E-08 261117703 61428583 4:01 4 6.92E-08 261117712 61428574 10.34046407 0.076 4247330.072 -2.816269291 n/a -2.816269291 1 1 1 TCGA-06-0877-10A-01W-0424-08 81.71991198 0 99 0.89474502 0.998208486 0.936636056 0.89474502 0.992833275 0.999991998 0.996441107 0.992833275 chr21_random 4:01 4 6.81E-08 235855955 58863379 4:01 4 7.66E-08 238860801 55858533 4:01 4 7.66E-08 238860796 55858538 9.107338139 0.076 4016880.592 -12.80201828 n/a -12.80201828 1 1 1 TCGA-06-0878-01A-01W-0424-08 77.11701245 0 99 0.879382385 0.997970221 0.92946476 0.879382385 0.99000661 0.999915282 0.99644175 0.99000661 chr4_random 2:01 2 2.34E-08 230798701 99212353 3:01 3 2.69E-08 236339385 93671669 3:01 3 2.69E-08 236339392 93671662 10.44142263 0.076 6697954.328 -11.72052619 n/a -11.72052619 1 1 1 TCGA-06-0878-10A-01W-0424-08 80.02992796 0 99 0.888902325 0.998282302 0.933131187 0.888902325 0.993491084 0.99998239 0.996943692 0.993491084 chr4_random 5:01 5 7.80E-08 270284085 58865849 5:01 5 9.26E-08 274688874 54461060 5:01 5 9.26E-08 274688875 54461059 10.44782518 0.076 3804276.52 18.24749169 18.24749169 18.24749169 1 1 1 TCGA-06-0879-01A-01W-0424-08 78.06500729 0 99 0.894442361 0.998274371 0.93719838 0.894442361 0.995468549 0.999963257 0.99799937 0.995468549 chr6_random 4:01 4 4.87E-08 256816457 72631183 4:01 4 5.83E-08 262363366 67084274 4:01 4 5.83E-08 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