DETAIL REPORT Array 1 >gi|6626248|gb|AE000657.1| Aquifex aeolicus VF5, complete genome Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 156460 31 100.0 36 GGCGTGCAGG ................-.............. CAGTCAGATTGAAGTTATCGTCAACTTCAAAATACG 156527 31 100.0 44 TCAAAATACG ................-.............. TTGCTTTATCAGAGAATAGTATTCTTTCTATGTCTTCATAGTTT 156602 31 100.0 41 TTCATAGTTT ................-.............. TCTTGATAGTATCTGTTTTCCGCGTATTCCACGATTCTTTT 156674 31 93.5 CGATTCTTTT ................A.............T TCGGTGATAAAGGAGCATTTTTCACAAAAGAAATCA ========== ====== ====== ====== ========== =============================== 4 31 40 GTTCCTAATGTACCGT-GTGGAGTTGAAACC Array 2 >gi|6626248|gb|AE000657.1| Aquifex aeolicus VF5, complete genome Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 244561 29 100.0 39 CAGAACTTGA ............................. ATGACATTTCAGGAGGTGGAGCATGATTACTATCTTTTC 244629 29 100.0 40 CTATCTTTTC ............................. AGTATAAGCTTTCTAAGCCTTGAAAGGAAAAGCTCCTCGC 244698 29 100.0 36 AGCTCCTCGC ............................. TCTCTACCTTCCTTTCAACCTGTATTGCTATGTCCG 244763 29 100.0 GCTATGTCCG ............................. CCTGCGTGCCT ========== ====== ====== ====== ========== ============================= 4 29 38 GTTTCAACTCCACACGGTACATTAGGAAC Array 3 >gi|6626248|gb|AE000657.1| Aquifex aeolicus VF5, complete genome Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 279264 29 100.0 36 TACAATCTGC ............................. CATCTGCAACATATTCAAGTTCAGCTTCAAAACCTT 279329 29 100.0 36 TCAAAACCTT ............................. TTCGTCAAGCTTTACCTCAAAAGTCCTCTCAAACCT 279394 29 100.0 38 TCTCAAACCT ............................. AATAATCAACAACTCTTTGATTTTGTGAAATGGAAGAA 279461 29 100.0 37 AATGGAAGAA ............................. AGAACTCTCAGAAGAACCGAGAGCTTTTTCTATTAAC 279527 29 100.0 TTCTATTAAC ............................. CCTGCGTGCC ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAACTCCACACGGTACATTAGAAAC Array 4 >gi|6626248|gb|AE000657.1| Aquifex aeolicus VF5, complete genome Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1226627 31 100.0 36 GACACGCAGG ............................... AGAACAATAAGAGAGCCGATTGATGAGAACGCAGAC 1226694 31 96.8 36 GAACGCAGAC ..............................A GATATGATACACCTGAAACATTCTTTTACATGGACC 1226761 31 100.0 TACATGGACC ............................... CGGCGGATATA ========== ====== ====== ====== ========== =============================== 3 31 36 GTTTCTAATGTACCGTAGAGGAGTTGAAACC Array 5 >gi|6626248|gb|AE000657.1| Aquifex aeolicus VF5, complete genome Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1379666 30 100.0 37 TCCGAAGTCA .............................. TTATTTAGCATTCAAAAAAGGAGTTCTTGTAAATACA 1379733 30 100.0 36 TGTAAATACA .............................. AAGTGAGGAGATGGGAAAGACATGAGGAAATTCTAC 1379799 30 100.0 36 GAAATTCTAC .............................. TGCTGGATTTCCCTTCCTTATTTTAATGTTCATTAC 1379865 30 100.0 TGTTCATTAC .............................. CCTGCGTGCCT ========== ====== ====== ====== ========== ============================== 4 30 36 GTTTCAACTCCACTACGGTACATTAGGAAC Array 6 >gi|2984550|gb|AE000667.1| Aquifex aeolicus VF5 plasmid ece1, complete sequence Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 437 29 100.0 36 TGTCAATAAG ............................. CTCAATAGCTTCTACTCCTTCAGGCACAGCTTCTTT 502 29 100.0 38 CAGCTTCTTT ............................. CAAAGAAGTCCTTTATCTTAGAAACCTTCTTTTTGGAC 569 29 100.0 37 CTTTTTGGAC ............................. GGGAGTTCTAAAGAAGAGGTAATCGGGTATCTTTTCG 635 29 100.0 TATCTTTTCG ............................. CCGTTAATA ========== ====== ====== ====== ========== ============================= 4 29 37 CTTTCTATCCCATATATGGGAACTAAAAC SUMMARY BY SIMILARITY Array Sequence Position Length # Copies Repeat Spacer + Consensus ===== ================ ========== ========== ======== ====== ====== = ========= 1 gi|6626248|gb|AE 156460 242 4 31 40 + GTTCCTAATGTACCGT-GTGGAGTTGAAACC 2 gi|6626248|gb|AE 244561 231 4 29 38 - GTTCCTAATGTACCGT-GTGGAGTTGAAAC- 3 gi|6626248|gb|AE 279264 292 5 29 36 - GTTTCTAATGTACCGT-GTGGAGTTAAAAC- 4 gi|6626248|gb|AE 1226627 165 3 31 36 + GTTTCTAATGTACCGTAGAGGAGTTGAAACC 5 gi|6626248|gb|AE 1379666 229 4 30 36 - GTTCCTAATGTACCGTAGTGGAGTTGAAAC- *** ************ * ****** **** 6 gi|2984550|gb|AE 437 227 4 29 37 + CTTTCTATCCCATATATGGGAACTAAAAC SUMMARY BY POSITION >gi|6626248|gb|AE000657.1| Aquifex aeolicus VF5, complete genome Array Sequence Position Length # Copies Repeat Spacer Distance Consensus ===== ================ ========== ========== ======== ====== ====== ========== ========= 1 gi|6626248|gb|AE 156460 242 4 31 40 GTTCCTAATGTACCGTGTGGAGTTGAAACC 2 gi|6626248|gb|AE 244561 231 4 29 38 87819 GTTTCAACTCCACACGGTACATTAGGAAC 3 gi|6626248|gb|AE 279264 292 5 29 36 34434 GTTTTAACTCCACACGGTACATTAGAAAC 4 gi|6626248|gb|AE 1226627 165 3 31 36 947035 GTTTCTAATGTACCGTAGAGGAGTTGAAACC 5 gi|6626248|gb|AE 1379666 229 4 30 36 152838 GTTTCAACTCCACTACGGTACATTAGGAAC >gi|2984550|gb|AE000667.1| Aquifex aeolicus VF5 plasmid ece1, complete sequence Array Sequence Position Length # Copies Repeat Spacer Distance Consensus ===== ================ ========== ========== ======== ====== ====== ========== ========= 6 gi|2984550|gb|AE 437 227 4 29 37 CTTTCTATCCCATATATGGGAACTAAAAC