Number Name Kingdom Classification Classification # AMD #SEED #Sargasso AMD per 1,000,000 proteins SEED per 1,000,000 proteins Sargasso per 1,000,000 proteins Prevalence 1 206-core-genes Bacteria Experimental Subsystems Empty 47 11922 5927 6193.990511 9446.123738 6170.352534 SEED 2 ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1) Archaea Membrane Transport ABC transporters 0 0 1 0 0 1.041058298 Sargasso 3 ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1) Bacteria Membrane Transport ABC transporters 0 464 403 0 367.6397764 419.5464942 Sargasso 4 ABC_transporter_arabinose_(TC_3.A.1.2.2) Bacteria Membrane Transport ABC transporters 0 554 120 0 438.9492158 124.9269958 SEED 5 ABC_transporter_arabinose_(TC_3.A.1.2.2) Eukaryota Membrane Transport ABC transporters 0 0 1 0 0 1.041058298 Sargasso 6 ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1) Bacteria Membrane Transport ABC transporters 0 2256 1169 0 1787.489947 1216.997151 SEED 7 ABC_transporter_dipeptide_(TC_3.A.1.5.2) Archaea Membrane Transport ABC transporters 22 317 87 2899.314707 251.1676921 90.57207195 SEED 8 ABC_transporter_dipeptide_(TC_3.A.1.5.2) Bacteria Membrane Transport ABC transporters 5 2106 730 658.9351608 1668.640882 759.9725577 SEED 9 ABC_transporter_ferric_enterobactin_(TC_3.A.1.14.2) Archaea Membrane Transport ABC transporters 0 2 0 0 1.584654209 0 SEED 10 ABC_transporter_ferric_enterobactin_(TC_3.A.1.14.2) Bacteria Membrane Transport ABC transporters 1 364 17 131.7870322 288.407066 17.69799107 SEED 11 ABC_transporter_ferrichrome_(TC_3.A.1.14.3) Archaea Membrane Transport ABC transporters 0 26 0 0 20.60050471 0 SEED 12 ABC_transporter_ferrichrome_(TC_3.A.1.14.3) Bacteria Membrane Transport ABC transporters 1 739 33 131.7870322 585.5297301 34.35492384 SEED 13 ABC_transporter_galactose_(TC_3.A.1.2.3) Bacteria Membrane Transport ABC transporters 0 556 122 0 440.53387 127.0091124 SEED 14 ABC_transporter_glutamate_aspartate_(TC_3.A.1.3.4) Bacteria Membrane Transport ABC transporters 0 460 36 0 364.470468 37.47809874 SEED 15 ABC_transporter_glutamine_(TC_3.A.1.3.2) Archaea Membrane Transport ABC transporters 0 282 76 0 223.4362434 79.12043066 SEED 16 ABC_transporter_glutamine_(TC_3.A.1.3.2) Bacteria Membrane Transport ABC transporters 0 1269 136 0 1005.463095 141.5839286 SEED 17 ABC_transporter_glycerol_(TC_3.A.1.1.3) Bacteria Membrane Transport ABC transporters 2 653 333 263.5740643 517.3895991 346.6724133 SEED 18 ABC_transporter_heme_(TC3.A.1.107.1) Archaea Membrane Transport ABC transporters 0 4 15 0 3.169308417 15.61587447 Sargasso 19 ABC_transporter_heme_(TC3.A.1.107.1) Bacteria Membrane Transport ABC transporters 0 408 346 0 323.2694586 360.2061712 Sargasso 20 ABC_transporter_histidine_lysine_arginine_ornithine_(TC_3.A.1.3.1) Bacteria Membrane Transport ABC transporters 0 574 60 0 454.7957579 62.46349789 SEED 21 ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1) Archaea Membrane Transport ABC transporters 0 103 2 0 81.60969175 2.082116596 SEED 22 ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1) Bacteria Membrane Transport ABC transporters 2 911 62 263.5740643 721.809992 64.54561449 SEED 23 ABC_transporter_L-proline_glycine_betaine_(TC_3.A.1.12.1) Archaea Membrane Transport ABC transporters 0 68 16 0 53.87824309 16.65693277 SEED 24 ABC_transporter_L-proline_glycine_betaine_(TC_3.A.1.12.1) Bacteria Membrane Transport ABC transporters 0 1181 375 0 935.7383102 390.3968618 SEED 25 ABC_transporter_macrolide Bacteria Membrane Transport ABC transporters 4 606 123 527.1481286 480.1502252 128.0501707 SEED 26 ABC_transporter_maltose Archaea Membrane Transport ABC transporters 12 28 8 1581.444386 22.18515892 8.328466386 SEED 27 ABC_transporter_maltose Bacteria Membrane Transport ABC transporters 4 1235 394 527.1481286 978.5239738 410.1769695 SEED 28 ABC_transporter_maltose Eukaryota Membrane Transport ABC transporters 0 0 3 0 0 3.123174895 Sargasso 29 ABC_transporter_molybdenum_(TC_3.A.1.8.1) Archaea Membrane Transport ABC transporters 0 92 3 0 72.8940936 3.123174895 SEED 30 ABC_transporter_molybdenum_(TC_3.A.1.8.1) Bacteria Membrane Transport ABC transporters 2 562 111 263.5740643 445.2878326 115.5574711 SEED 31 ABC_transporter_nickel_(TC_3.A.1.5.3) Archaea Membrane Transport ABC transporters 0 12 0 0 9.507925252 0 SEED 32 ABC_transporter_nickel_(TC_3.A.1.5.3) Bacteria Membrane Transport ABC transporters 0 219 7 0 173.5196358 7.287408088 SEED 33 ABC_transporter_oligopeptide_(TC_3.A.1.5.1) Archaea Membrane Transport ABC transporters 4 153 37 527.1481286 121.226047 38.51915703 SEED 34 ABC_transporter_oligopeptide_(TC_3.A.1.5.1) Bacteria Membrane Transport ABC transporters 16 3011 1488 2108.592514 2385.696911 1549.094748 SEED 35 ABC_transporter_peptide_(TC_3.A.1.5.5) Bacteria Membrane Transport ABC transporters 0 413 28 0 327.2310941 29.14963235 SEED 36 ABC_transporter_polyamine_putrescine_spermidine_(TC_3.A.1.11.1)_ Archaea Membrane Transport ABC transporters 0 39 9 0 30.90075707 9.369524684 SEED 37 ABC_transporter_polyamine_putrescine_spermidine_(TC_3.A.1.11.1)_ Bacteria Membrane Transport ABC transporters 1 1456 529 131.7870322 1153.628264 550.7198398 SEED 38 Acetogenesis_from_Pyruvate Archaea Carbohydrates Central carbohydrate metabolism 0 17 31 0 13.46956077 32.27280724 Sargasso 39 Acetogenesis_from_Pyruvate Bacteria Carbohydrates Central carbohydrate metabolism 3 1309 932 395.3610965 1037.15618 970.2663339 Sargasso 40 Acetogenesis_from_Pyruvate Eukaryota Carbohydrates Central carbohydrate metabolism 0 10 1 0 7.923271043 1.041058298 SEED 41 Acetoin_metabolism Bacteria Carbohydrates Central carbohydrate metabolism 1 131 12 131.7870322 103.7948507 12.49269958 SEED 42 Adhesion_to_eukaryotic_cell Bacteria Virulence Adhesion 0 439 19 0 347.8315988 19.78010767 SEED 43 Aerobic_respiratory_dehydrogenases Bacteria Oxidative Phosphorylation Respiration 4 463 150 527.1481286 366.8474493 156.1587447 SEED 44 Alanine_Biosynthesis Bacteria Amino Acids and Derivatives Alanine, serine, and glycine 1 98 33 131.7870322 77.64805622 34.35492384 SEED 45 Alanine_Biosynthesis_extended Bacteria Amino Acids and Derivatives Alanine, serine, and glycine 1 209 112 131.7870322 165.5963648 116.5985294 SEED 46 Allantoin_degradation Archaea Nitrogen Metabolism Empty 4 28 6 527.1481286 22.18515892 6.246349789 SEED 47 Allantoin_degradation Bacteria Nitrogen Metabolism Empty 14 1250 781 1845.01845 990.4088804 813.0665309 SEED 48 Allantoin_degradation Eukaryota Nitrogen Metabolism Empty 0 40 18 0 31.69308417 18.73904937 SEED 49 Ammonia_assimilation Archaea Nitrogen Metabolism Empty 1 76 9 131.7870322 60.21685993 9.369524684 SEED 50 Ammonia_assimilation Bacteria Nitrogen Metabolism Empty 12 952 812 1581.444386 754.2954033 845.3393382 Sargasso 51 Anaerobic_respiratory_dehydrogenases Bacteria Oxidative Phosphorylation Respiration 1 516 101 131.7870322 408.8407858 105.1468881 SEED 52 Anaerobic_respiratory_reductases Bacteria Oxidative Phosphorylation Respiration 1 188 118 131.7870322 148.9574956 122.8448792 SEED 53 archaeal_general_transcription_factors Archaea RNA metabolism Empty 9 77 74 1186.083289 61.00918703 77.03831407 Sargasso 54 archaeal_proteasome Archaea Protein Metabolism Protein Degradation 7 95 30 922.5092251 75.27107491 31.23174895 SEED 55 archaeal_proteasome Bacteria Protein Metabolism Protein Degradation 2 24 6 263.5740643 19.0158505 6.246349789 SEED 56 archaeal_RNA_polymerase Archaea RNA metabolism Empty 17 201 79 2240.379547 159.257748 82.24360556 SEED 57 Arginine_Biosynthesis Archaea Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 24 4 0 19.0158505 4.164233193 SEED 58 Arginine_Biosynthesis Bacteria Amino Acids and Derivatives Arginine; urea cycle, polyamines 9 1186 360 1186.083289 939.6999457 374.7809874 SEED 59 Arginine_degradation_ Archaea Amino Acids and Derivatives Arginine; urea cycle, polyamines 43 221 123 5666.842383 175.1042901 128.0501707 SEED 60 Arginine_degradation_ Bacteria Amino Acids and Derivatives Arginine; urea cycle, polyamines 23 4899 3043 3031.10174 3881.610484 3167.940401 SEED 61 Arginine_degradation_ Eukaryota Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 204 95 0 161.6347293 98.90053833 SEED 62 Arginine_Synthesis Bacteria Amino Acids and Derivatives Arginine; urea cycle, polyamines 12 355 229 1581.444386 281.276122 238.4023503 Sargasso 63 Bacterial_Cell_Division Archaea Cell Division and Cell Cycle Cell cycle in Prokaryota 23 349 80 3031.10174 276.5221594 83.28466386 SEED 64 Bacterial_Cell_Division Bacteria Cell Division and Cell Cycle Cell cycle in Prokaryota 44 6907 5042 5798.629415 5472.60331 5249.01594 Sargasso 65 Bacterial_Cell_Division Eukaryota Cell Division and Cell Cycle Cell cycle in Prokaryota 0 104 15 0 82.40201885 15.61587447 SEED 66 bacterial_RNA_polymerase Bacteria RNA metabolism Empty 5 836 1791 658.9351608 662.3854592 1864.535412 Sargasso 67 Betaine_biosynthesis Bacteria Fatty Acids and Lipids Phospholipids 5 766 761 658.9351608 606.9225619 792.2453649 Sargasso 68 Betaine_biosynthesis Eukaryota Fatty Acids and Lipids Phospholipids 0 18 78 0 14.26188788 81.20254726 Sargasso 69 Bilin_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 0 45 80 0 35.65471969 83.28466386 Sargasso 70 Biotin-Dependent_Transcarboxylation Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Biotin 0 90 114 0 71.30943939 118.680646 Sargasso 71 Biotin-Dependent_Transcarboxylation Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Biotin 4 829 827 527.1481286 656.8391695 860.9552126 Sargasso 72 Biotin_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Biotin 6 160 115 790.7221929 126.7723367 119.7217043 Sargasso 73 Biotin_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Biotin 9 1694 516 1186.083289 1342.202115 537.1860819 SEED 74 Biotin_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Biotin 0 57 5 0 45.16264495 5.205291491 SEED 75 bs_essential_all Bacteria Experimental Subsystems Empty 2 960 198 263.5740643 760.6340201 206.129543 SEED 76 bs_fatty_acid_biosynthesis_initial_steps Bacteria Experimental Subsystems Empty 2 68 49 263.5740643 53.87824309 51.01185661 Sargasso 77 Butyrate_and_Butanol_Acetone_fermentation Bacteria Carbohydrates Central carbohydrate metabolism 11 667 204 1449.657354 528.4821786 212.3758928 SEED 78 Calvin-Benson_cycle Archaea Carbohydrates CO2 fixation 23 138 49 3031.10174 109.3411404 51.01185661 SEED 79 Calvin-Benson_cycle Bacteria Carbohydrates CO2 fixation 19 3003 2619 2503.953611 2379.358294 2726.531683 Sargasso 80 Calvin-Benson_cycle Eukaryota Carbohydrates CO2 fixation 1 139 61 131.7870322 110.1334675 63.50455619 SEED 81 Calvin-Benson_cycle:_acceptor_regeneration Archaea Carbohydrates CO2 fixation 3 5 0 395.3610965 3.961635522 0 SEED 82 Calvin-Benson_cycle:_acceptor_regeneration Bacteria Carbohydrates CO2 fixation 3 192 158 395.3610965 152.126804 164.4872111 Sargasso 83 Calvin-Benson_cycle:_acceptor_regeneration Eukaryota Carbohydrates CO2 fixation 0 7 1 0 5.54628973 1.041058298 SEED 84 Calvin-Benson_cycle:_carbon_fixation Bacteria Carbohydrates CO2 fixation 0 29 48 0 22.97748603 49.97079831 Sargasso 85 Calvin-Benson_cycle:_carbon_fixation-mcoleman Bacteria Carbohydrates CO2 fixation 0 24 46 0 19.0158505 47.88868172 Sargasso 86 Calvin-Benson_cycle:_carbon_reduction Archaea Carbohydrates CO2 fixation 0 7 9 0 5.54628973 9.369524684 Sargasso 87 Calvin-Benson_cycle:_carbon_reduction Bacteria Carbohydrates CO2 fixation 1 441 463 131.7870322 349.416253 482.0099921 Sargasso 88 Calvin-Benson_cycle:_carbon_reduction Eukaryota Carbohydrates CO2 fixation 0 91 52 0 72.10176649 54.13503151 SEED 89 Calvin-Benson_cycle:_pentose_regeneration Bacteria Carbohydrates CO2 fixation 2 363 398 263.5740643 287.6147389 414.3412027 Sargasso 90 Calvin-Benson_cycle:_pentose_regeneration Eukaryota Carbohydrates CO2 fixation 0 97 30 0 76.85572912 31.23174895 SEED 91 carnitine_metabolism Archaea Fatty Acids and Lipids Fatty acids 0 4 0 0 3.169308417 0 SEED 92 carnitine_metabolism Bacteria Fatty Acids and Lipids Fatty acids 8 491 139 1054.296257 389.0326082 144.7071035 SEED 93 carnitine_metabolism Eukaryota Fatty Acids and Lipids Fatty acids 0 3 3 0 2.376981313 3.123174895 Sargasso 94 Carotenoid_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 2 153 173 263.5740643 121.226047 180.1030856 Sargasso 95 Carotenoid_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 0 2 2 0 1.584654209 2.082116596 Sargasso 96 Carotenoids Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 6 429 474 790.7221929 339.9083278 493.4616334 Sargasso 97 Carotenoids Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 0 60 118 0 47.53962626 122.8448792 Sargasso 98 Chaperones Bacteria Protein Metabolism Protein Folding 11 1604 1659 1449.657354 1270.892675 1727.115717 Sargasso 99 Chaperones Eukaryota Protein Metabolism Protein Folding 0 39 7 0 30.90075707 7.287408088 SEED 100 Chlorophyll_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 7 404 555 922.5092251 320.1001501 577.7873555 Sargasso 101 Chlorophyll_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 0 34 19 0 26.93912155 19.78010767 SEED 102 Chorismate_Synthesis Archaea Amino Acids and Derivatives Aromatic amino acids and derivatives 29 201 116 3821.823933 159.257748 120.7627626 SEED 103 Chorismate_Synthesis Bacteria Amino Acids and Derivatives Aromatic amino acids and derivatives 16 3150 2567 2108.592514 2495.830379 2672.396652 Sargasso 104 Chorismate_Synthesis Eukaryota Amino Acids and Derivatives Aromatic amino acids and derivatives 0 165 39 0 130.7339722 40.60127363 SEED 105 Citrate_Isomerization Archaea One Carbon Metabolism Empty 0 0 3 0 0 3.123174895 Sargasso 106 Citrate_Isomerization Bacteria One Carbon Metabolism Empty 0 107 157 0 84.77900016 163.4461528 Sargasso 107 Citrate_Isomerization Eukaryota One Carbon Metabolism Empty 0 9 0 0 7.130943939 0 SEED 108 CMP-N-acetylneuraminate_Biosynthesis_ Bacteria Carbohydrates Aminosugars 0 485 1084 0 384.2786456 1128.507195 Sargasso 109 CMP-N-acetylneuraminate_Biosynthesis_ Eukaryota Carbohydrates Aminosugars 1 43 70 131.7870322 34.07006549 72.87408088 Sargasso 110 CO2_fixation Bacteria Carbohydrates CO2 fixation 0 35 137 0 27.73144865 142.6249869 Sargasso 111 Coenzyme_A_Biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme A 15 165 91 1976.805482 130.7339722 94.73630514 SEED 112 Coenzyme_A_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme A 24 2888 2119 3162.888772 2288.240677 2206.002534 Sargasso 113 Coenzyme_A_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme A 0 290 70 0 229.7748603 72.87408088 SEED 114 coenzyme_M_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme M 1 80 85 131.7870322 63.38616835 88.48995535 Sargasso 115 coenzyme_M_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme M 0 37 25 0 29.31610286 26.02645746 Sargasso 116 Conserved_tRNAs Archaea Experimental Subsystems Empty 50 332 178 6589.351608 263.0525986 185.3083771 SEED 117 Conserved_tRNAs Bacteria Experimental Subsystems Empty 25 3854 4946 3294.675804 3053.62866 5149.074343 Sargasso 118 Conserved_tRNAs Eukaryota Experimental Subsystems Empty 0 221 24 0 175.1042901 24.98539916 SEED 119 Cyanobacterial_Circadian_Clock Bacteria Cell Division and Cell Cycle Cell cycle in Prokaryota 1 335 190 131.7870322 265.4295799 197.8010767 SEED 120 Cyanobacterial_CO2_uptake Bacteria Oxidative Phosphorylation Respiration 0 181 201 0 143.4112059 209.2527179 Sargasso 121 Cyanophycin_metabolism Bacteria Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 80 12 0 63.38616835 12.49269958 SEED 122 cysteine_biosynthesis Archaea Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 0 139 41 0 110.1334675 42.68339023 SEED 123 cysteine_biosynthesis Bacteria Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 11 3801 1502 1449.657354 3011.635324 1563.669564 SEED 124 cysteine_biosynthesis Eukaryota Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 0 17 2 0 13.46956077 2.082116596 SEED 125 Cytochrome_B6-F_complex Bacteria Photosynthesis Oxygenic photosynthesis 0 99 170 0 78.44038333 176.9799107 Sargasso 126 Cytochrome_B6-F_complex Eukaryota Photosynthesis Oxygenic photosynthesis 0 19 6 0 15.05421498 6.246349789 SEED 127 Cytolethal_distending_toxin_of_Campylobacter_jejuni_ Bacteria Virulence Toxins 0 16 0 0 12.67723367 0 SEED 128 D-arabinose_degradation Archaea Carbohydrates Monosaccharides 7 27 0 922.5092251 21.39283182 0 SEED 129 D-arabinose_degradation Bacteria Carbohydrates Monosaccharides 2 709 300 263.5740643 561.759917 312.3174895 SEED 130 D-arabinose_degradation Eukaryota Carbohydrates Monosaccharides 0 45 6 0 35.65471969 6.246349789 SEED 131 D-galactarate_degradation_ Archaea Carbohydrates Monosaccharides 0 8 6 0 6.338616835 6.246349789 Sargasso 132 D-galactarate_degradation_ Bacteria Carbohydrates Monosaccharides 8 768 332 1054.296257 608.5072161 345.631355 SEED 133 D-galacturonate_degradation Archaea Carbohydrates Monosaccharides 0 9 1 0 7.130943939 1.041058298 SEED 134 D-galacturonate_degradation Bacteria Carbohydrates Monosaccharides 0 880 436 0 697.2478518 453.901418 SEED 135 D-galacturonate_degradation Eukaryota Carbohydrates Monosaccharides 0 35 1 0 27.73144865 1.041058298 SEED 136 D-glucarate_degradation_ Archaea Carbohydrates Monosaccharides 0 8 6 0 6.338616835 6.246349789 Sargasso 137 D-glucarate_degradation_ Bacteria Carbohydrates Monosaccharides 8 768 332 1054.296257 608.5072161 345.631355 SEED 138 De_Novo_Purine_Biosynthesis Archaea Nucleosides and Nucleotides Purines 40 285 208 5271.481286 225.8132247 216.540126 Sargasso 139 De_Novo_Purine_Biosynthesis Bacteria Nucleosides and Nucleotides Purines 25 3726 4183 3294.675804 2952.210791 4354.746861 Sargasso 140 De_Novo_Purine_Biosynthesis Eukaryota Nucleosides and Nucleotides Purines 2 237 74 263.5740643 187.7815237 77.03831407 SEED 141 De_Novo_Pyrimidine_Synthesis Archaea Nucleosides and Nucleotides Pyrimidines 29 228 127 3821.823933 180.6505798 132.2144039 SEED 142 De_Novo_Pyrimidine_Synthesis Bacteria Nucleosides and Nucleotides Pyrimidines 16 2697 2953 2108.592514 2136.9062 3074.245155 Sargasso 143 De_Novo_Pyrimidine_Synthesis Eukaryota Nucleosides and Nucleotides Pyrimidines 0 189 125 0 149.7498227 130.1322873 Sargasso 144 Denitrification Archaea Nitrogen Metabolism Empty 0 2 0 0 1.584654209 0 SEED 145 Denitrification Bacteria Nitrogen Metabolism Empty 0 99 7 0 78.44038333 7.287408088 SEED 146 DNA-replication Bacteria DNA metabolism DNA Replication 18 4705 2472 2372.166579 3727.899026 2573.496113 SEED 147 DNA_Repair_Base_Excision Archaea DNA metabolism DNA Repair 21 130 22 2767.527675 103.0025236 22.90328256 SEED 148 DNA_Repair_Base_Excision Bacteria DNA metabolism DNA Repair 12 1943 1475 1581.444386 1539.491564 1535.56099 Sargasso 149 DNA_Repair_Base_Excision Eukaryota DNA metabolism DNA Repair 0 50 5 0 39.61635522 5.205291491 SEED 150 DNA_replication Bacteria DNA metabolism DNA Replication 7 1156 1058 922.5092251 915.9301326 1101.43968 Sargasso 151 dTDP-rhamnose_synthesis Archaea Cell Wall and Capsule Gram-Negative cell wall components 8 127 186 1054.296257 100.6255422 193.6368435 Sargasso 152 dTDP-rhamnose_synthesis Bacteria Cell Wall and Capsule Gram-Negative cell wall components 9 1329 1198 1186.083289 1053.002722 1247.187841 Sargasso 153 Embden-Meyerhof_and_Gluconeogenesis Archaea Carbohydrates Central carbohydrate metabolism 30 259 83 3953.610965 205.21272 86.40783875 SEED 154 Embden-Meyerhof_and_Gluconeogenesis Bacteria Carbohydrates Central carbohydrate metabolism 23 4291 3131 3031.10174 3399.875605 3259.553532 Sargasso 155 Embden-Meyerhof_and_Gluconeogenesis Eukaryota Carbohydrates Central carbohydrate metabolism 2 831 150 263.5740643 658.4238237 156.1587447 SEED 156 Embden-Meyerhof_and_Gluconogenesis Archaea Carbohydrates Central carbohydrate metabolism 34 301 99 4480.759093 238.4904584 103.0647715 SEED 157 Embden-Meyerhof_and_Gluconogenesis Bacteria Carbohydrates Central carbohydrate metabolism 24 4755 3234 3162.888772 3767.515381 3366.782536 Sargasso 158 Embden-Meyerhof_and_Gluconogenesis Eukaryota Carbohydrates Central carbohydrate metabolism 2 398 149 263.5740643 315.3461875 155.1176864 SEED 159 Enterobactin_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Siderophores 2 8 3 263.5740643 6.338616835 3.123174895 SEED 160 Enterobactin_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Siderophores 4 874 116 527.1481286 692.4938892 120.7627626 SEED 161 Enterobactin_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Siderophores 0 0 1 0 0 1.041058298 Sargasso 162 F0F1-type_ATP_synthase Archaea Oxidative Phosphorylation ATP synthases 0 14 1 0 11.09257946 1.041058298 SEED 163 F0F1-type_ATP_synthase Bacteria Oxidative Phosphorylation ATP synthases 9 2376 1955 1186.083289 1882.5692 2035.268973 Sargasso 164 Fatty_Acid_Biosynthesis_FASII Bacteria Fatty Acids and Lipids Fatty acids 34 5699 3889 4480.759093 4515.472168 4048.675722 Sargasso 165 fatty_acid_metabolism Archaea Fatty Acids and Lipids Fatty acids 27 188 94 3558.249868 148.9574956 97.85948003 SEED 166 fatty_acid_metabolism Bacteria Fatty Acids and Lipids Fatty acids 36 6892 5649 4744.333158 5460.718403 5880.938327 Sargasso 167 fatty_acid_metabolism Eukaryota Fatty Acids and Lipids Fatty acids 0 544 66 0 431.0259448 68.70984768 SEED 168 fatty_acid_oxidation_pathway Archaea Fatty Acids and Lipids Fatty acids 23 150 72 3031.10174 118.8490656 74.95619747 SEED 169 fatty_acid_oxidation_pathway Bacteria Fatty Acids and Lipids Fatty acids 11 4396 3744 1449.657354 3483.069951 3897.722269 Sargasso 170 fatty_acid_oxidation_pathway Eukaryota Fatty Acids and Lipids Fatty acids 0 253 24 0 200.4587574 24.98539916 SEED 171 Fe-S_cluster_assembly Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Iron-sulfur clusters 9 98 17 1186.083289 77.64805622 17.69799107 SEED 172 Fe-S_cluster_assembly Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Iron-sulfur clusters 16 2479 1464 2108.592514 1964.178892 1524.109349 SEED 173 Flagellum Bacteria Motility and Chemotaxis Flagella 28 3378 771 3690.0369 2676.480958 802.6559479 SEED 174 FMN_and_FAD_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD 1 82 29 131.7870322 64.97082255 30.19069065 SEED 175 FMN_and_FAD_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD 10 2124 1602 1317.870322 1682.90277 1667.775394 Sargasso 176 FMN_and_FAD_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD 0 53 7 0 41.99333653 7.287408088 SEED 177 Folate_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 11 37 15 1449.657354 29.31610286 15.61587447 SEED 178 Folate_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 10 1941 1008 1317.870322 1537.906909 1049.386765 SEED 179 Folate_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 0 88 9 0 69.72478518 9.369524684 SEED 180 Formate_hydrogenase Bacteria Oxidative Phosphorylation Respiration 8 648 101 1054.296257 513.4279636 105.1468881 SEED 181 Fructose_and_Mannose_metabolism Archaea Carbohydrates Monosaccharides 0 7 3 0 5.54628973 3.123174895 SEED 182 Fructose_and_Mannose_metabolism Bacteria Carbohydrates Monosaccharides 0 376 23 0 297.9149912 23.94434086 SEED 183 Fructose_and_Mannose_metabolism Eukaryota Carbohydrates Monosaccharides 0 150 66 0 118.8490656 68.70984768 SEED 184 Fumarate_reductase Archaea Oxidative Phosphorylation Respiration 9 45 32 1186.083289 35.65471969 33.31386554 Sargasso 185 Fumarate_reductase Bacteria Oxidative Phosphorylation Respiration 2 709 806 263.5740643 561.759917 839.0929884 Sargasso 186 Fumarate_reductase Eukaryota Oxidative Phosphorylation Respiration 0 45 5 0 35.65471969 5.205291491 SEED 187 Galactitol_degradation Bacteria Carbohydrates Sugar alcohols 0 447 43 0 354.1702156 44.76550682 SEED 188 Galactitol_degradation Eukaryota Carbohydrates Sugar alcohols 0 65 24 0 51.50126178 24.98539916 SEED 189 Galactitol_Utilization Bacteria Carbohydrates Sugar alcohols 0 629 24 0 498.3737486 24.98539916 SEED 190 Galactose_degradation Archaea Carbohydrates Monosaccharides 22 149 235 2899.314707 118.0567385 244.6487001 Sargasso 191 Galactose_degradation Bacteria Carbohydrates Monosaccharides 13 2211 1549 1713.231418 1751.835228 1612.599304 Sargasso 192 Galactose_degradation Eukaryota Carbohydrates Monosaccharides 0 205 71 0 162.4270564 73.91513917 SEED 193 General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1) Archaea Protein Metabolism Protein Export and Secretion 13 143 29 1713.231418 113.3027759 30.19069065 SEED 194 General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1) Bacteria Protein Metabolism Protein Export and Secretion 9 3250 2661 1186.083289 2575.063089 2770.256132 Sargasso 195 General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1) Eukaryota Protein Metabolism Protein Export and Secretion 0 49 25 0 38.82402811 26.02645746 SEED 196 Glutamate_biosynthesis Archaea Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 11 138 21 1449.657354 109.3411404 21.86222426 SEED 197 Glutamate_biosynthesis Bacteria Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 9 1015 1401 1186.083289 804.2120109 1458.522676 Sargasso 198 Glutamate_biosynthesis Eukaryota Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0 57 20 0 45.16264495 20.82116596 SEED 199 Glutathione_Redox_Metabolism Bacteria Stress response Oxidative stress 0 1083 639 0 858.090254 665.2362526 SEED 200 Glutathione_Redox_Metabolism Eukaryota Stress response Oxidative stress 0 95 22 0 75.27107491 22.90328256 SEED 201 Glycerol_Metabolism Archaea Fatty Acids and Lipids Glycerol 12 55 40 1581.444386 43.57799074 41.64233193 Sargasso 202 Glycerol_Metabolism Bacteria Fatty Acids and Lipids Glycerol 9 1768 963 1186.083289 1400.83432 1002.539141 SEED 203 Glycerol_Metabolism Eukaryota Fatty Acids and Lipids Glycerol 0 112 15 0 88.74063568 15.61587447 SEED 204 Glycerolipid metabolism Bacteria Fatty Acids and Lipids Phosphoglycerides 0 186 94 0 147.3728414 97.85948003 SEED 205 Glycerolipid_metabolism Bacteria Fatty Acids and Lipids Phosphoglycerides 4 1547 397 527.1481286 1225.73003 413.3001444 SEED 206 Glycine_synthesis Archaea Amino Acids and Derivatives Alanine, serine, and glycine 7 24 34 922.5092251 19.0158505 35.39598214 Sargasso 207 Glycine_synthesis Bacteria Amino Acids and Derivatives Alanine, serine, and glycine 2 492 483 263.5740643 389.8249353 502.831158 Sargasso 208 Glycine_synthesis Eukaryota Amino Acids and Derivatives Alanine, serine, and glycine 0 11 1 0 8.715598148 1.041058298 SEED 209 glyoxylate_degradation_ Archaea Carbohydrates Central carbohydrate metabolism 17 87 62 2240.379547 68.93245808 64.54561449 Sargasso 210 glyoxylate_degradation_ Bacteria Carbohydrates Central carbohydrate metabolism 11 2396 2658 1449.657354 1898.415742 2767.132957 Sargasso 211 glyoxylate_degradation_ Eukaryota Carbohydrates Central carbohydrate metabolism 0 171 31 0 135.4879348 32.27280724 SEED 212 Glyoxylate_Synthesis Archaea Carbohydrates Central carbohydrate metabolism 7 27 21 922.5092251 21.39283182 21.86222426 Sargasso 213 Glyoxylate_Synthesis Bacteria Carbohydrates Central carbohydrate metabolism 2 476 547 263.5740643 377.1477017 569.4588891 Sargasso 214 Glyoxylate_Synthesis Eukaryota Carbohydrates Central carbohydrate metabolism 0 36 25 0 28.52377576 26.02645746 Sargasso 215 gram_plus_late_competence Bacteria DNA metabolism DNA uptake, competence 2 516 13 263.5740643 408.8407858 13.53375788 SEED 216 GroEL_GroES Bacteria Protein Metabolism Protein Folding 0 282 304 0 223.4362434 316.4817227 Sargasso 217 GroEL_GroES Eukaryota Protein Metabolism Protein Folding 0 33 7 0 26.14679444 7.287408088 SEED 218 Guanylate_Cyclase_Signaling__ Eukaryota Unclassified Empty 0 71 1 0 56.25522441 1.041058298 SEED 219 Heme_Biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 1 11 11 131.7870322 8.715598148 11.45164128 Sargasso 220 Heme_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 4 132 133 527.1481286 104.5871778 138.4607537 Sargasso 221 Heterofermentative_lactate_fermentation Archaea Carbohydrates Central carbohydrate metabolism 1 29 36 131.7870322 22.97748603 37.47809874 Sargasso 222 Heterofermentative_lactate_fermentation Bacteria Carbohydrates Central carbohydrate metabolism 2 792 294 263.5740643 627.5230666 306.0711397 SEED 223 Histidine_Biosynthesis Archaea Amino Acids and Derivatives Histidine 20 147 83 2635.740643 116.4720843 86.40783875 SEED 224 Histidine_Biosynthesis Bacteria Amino Acids and Derivatives Histidine 25 2749 2068 3294.675804 2178.10721 2152.908561 Sargasso 225 Histidine_Biosynthesis Eukaryota Amino Acids and Derivatives Histidine 0 66 39 0 52.29358889 40.60127363 SEED 226 Histidine_Degradation Archaea Amino Acids and Derivatives Histidine 16 19 6 2108.592514 15.05421498 6.246349789 SEED 227 Histidine_Degradation Bacteria Amino Acids and Derivatives Histidine 0 739 416 0 585.5297301 433.0802521 SEED 228 Histidine_Degradation Eukaryota Amino Acids and Derivatives Histidine 0 28 17 0 22.18515892 17.69799107 SEED 229 HMG-CoA_related,_temporary Bacteria Amino Acids and Derivatives Branhed-chain amino acids 7 1166 1140 922.5092251 923.8534036 1186.80646 Sargasso 230 HMG-CoA_related,_temporary Eukaryota Amino Acids and Derivatives Branhed-chain amino acids 0 125 11 0 99.04088804 11.45164128 SEED 231 HMG_CoA_Synthesis Bacteria Amino Acids and Derivatives Branhed-chain amino acids 8 619 654 1054.296257 490.4504776 680.852127 Sargasso 232 HMG_CoA_Synthesis Eukaryota Amino Acids and Derivatives Branhed-chain amino acids 0 42 6 0 33.27773838 6.246349789 SEED 233 Homofermentative_lactate_fermentation Archaea Carbohydrates Central carbohydrate metabolism 7 47 17 922.5092251 37.2393739 17.69799107 SEED 234 Homofermentative_lactate_fermentation Bacteria Carbohydrates Central carbohydrate metabolism 2 881 574 263.5740643 698.0401789 597.5674632 Sargasso 235 Homofermentative_lactate_fermentation Eukaryota Carbohydrates Central carbohydrate metabolism 0 102 32 0 80.81736464 33.31386554 SEED 236 hpa_catabolic_pathway Bacteria Degradation/Utilization/Assimilation of Various Compounds Empty 0 180 23 0 142.6188788 23.94434086 SEED 237 Hydrogenase_Hyp-operon_maturation_factors Bacteria Unclassified Empty 0 235 15 0 186.1968695 15.61587447 SEED 238 Hydrogenases Archaea Oxidative Phosphorylation Respiration 0 84 3 0 66.55547676 3.123174895 SEED 239 Hydrogenases Bacteria Oxidative Phosphorylation Respiration 1 583 26 131.7870322 461.9267018 27.06751575 SEED 240 Inorganic_Sulfur_Assimilation_ Bacteria Sulfur Metabolism Inorganic sulfur assibilation 3 384 92 395.3610965 304.2536081 95.77736344 SEED 241 Inositol_catabolism Bacteria Carbohydrates Sugar alcohols 0 181 75 0 143.4112059 78.07937237 SEED 242 Inositol_catabolism_by_VV Bacteria Carbohydrates Sugar alcohols 1 437 164 131.7870322 346.2469446 170.7335609 SEED 243 Iron_Aquisition Bacteria Virulence Nutrient Acquisition in Host 0 259 5 0 205.21272 5.205291491 SEED 244 Isoleucine_Synthesis Bacteria Amino Acids and Derivatives Branhed-chain amino acids 0 31 16 0 24.56214023 16.65693277 SEED 245 Isoprenoid_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 14 2195 1863 1845.01845 1739.157994 1939.49161 Sargasso 246 Isoprenoid_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 0 154 20 0 122.0183741 20.82116596 SEED 247 Isoprenoid_Biosynthesis,_Mevalonate_Pathway Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 3 417 89 395.3610965 330.4004025 92.65418854 SEED 248 Isoprenoid_Biosynthesis,_Mevalonate_Pathway Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 0 120 5 0 95.07925252 5.205291491 SEED 249 Isoprenoid_Biosynthesis,_Nonmevalonate_(DXP)_Pathway Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 4 944 716 527.1481286 747.9567865 745.3977415 Sargasso 250 KdpFABC_potassium_regulation Bacteria Cell signaling Signal transduction in prokaryota 2 305 24 263.5740643 241.6597668 24.98539916 SEED 251 Ketogluconate_metabolism Archaea Carbohydrates Monosaccharides 7 26 21 922.5092251 20.60050471 21.86222426 Sargasso 252 Ketogluconate_metabolism Bacteria Carbohydrates Monosaccharides 2 1353 388 263.5740643 1072.018572 403.9306197 SEED 253 Ketogluconate_metabolism Eukaryota Carbohydrates Monosaccharides 0 35 0 0 27.73144865 0 SEED 254 L-ascorbate_degradation_ Archaea Carbohydrates Monosaccharides 0 70 16 0 55.4628973 16.65693277 SEED 255 L-ascorbate_degradation_ Bacteria Carbohydrates Monosaccharides 0 1391 93 0 1102.127002 96.81842173 SEED 256 Lactose_degradation Archaea Carbohydrates Di- and oligosaccharides 5 25 33 658.9351608 19.80817761 34.35492384 Sargasso 257 Lactose_degradation Bacteria Carbohydrates Di- and oligosaccharides 0 959 254 0 759.841693 264.4288077 SEED 258 Lactose_degradation Eukaryota Carbohydrates Di- and oligosaccharides 0 169 26 0 133.9032806 27.06751575 SEED 259 Leucine_Biosynthesis Archaea Amino Acids and Derivatives Branhed-chain amino acids 15 15 0 1976.805482 11.88490656 0 SEED 260 Leucine_Biosynthesis Bacteria Amino Acids and Derivatives Branhed-chain amino acids 1 68 149 131.7870322 53.87824309 155.1176864 Sargasso 261 Leucine_Biosynthesis_v2 Archaea Amino Acids and Derivatives Branhed-chain amino acids 0 8 0 0 6.338616835 0 SEED 262 Leucine_Biosynthesis_v2 Bacteria Amino Acids and Derivatives Branhed-chain amino acids 4 322 466 527.1481286 255.1293276 485.133167 Sargasso 263 Leucine_Degradation_and_HMG-CoA_Metabolism Bacteria Amino Acids and Derivatives Branhed-chain amino acids 10 1301 1226 1317.870322 1030.817563 1276.337474 Sargasso 264 Leucine_Degradation_and_HMG-CoA_Metabolism Eukaryota Amino Acids and Derivatives Branhed-chain amino acids 0 131 11 0 103.7948507 11.45164128 SEED 265 Leucine_synthesis Archaea Amino Acids and Derivatives Branhed-chain amino acids 10 171 87 1317.870322 135.4879348 90.57207195 SEED 266 Leucine_synthesis Bacteria Amino Acids and Derivatives Branhed-chain amino acids 17 1812 1911 2240.379547 1435.696713 1989.462408 Sargasso 267 Leucine_synthesis Eukaryota Amino Acids and Derivatives Branhed-chain amino acids 0 79 50 0 62.59384124 52.05291491 Sargasso 268 linker_unit-arabinogalactan_synthesis Bacteria Cell Wall and Capsule Cell wall of Mycobacteria 3 171 17 395.3610965 135.4879348 17.69799107 SEED 269 Listeria_Pathogenicity_Island_LIPI-1 Bacteria Virulence Virulence Islands, Prophages 0 18 0 0 14.26188788 0 SEED 270 Listeria_Pathogenicity_Island_LIPI-1_extended Bacteria Virulence Virulence Islands, Prophages 0 274 6 0 217.0976266 6.246349789 SEED 271 Listeria_surface_proteins:_Internalin-like_proteins Bacteria Virulence Invasion 0 588 30 0 465.8883373 31.23174895 SEED 272 Listeria_surface_proteins:_LPXTG_motif Bacteria Virulence Invasion 0 205 8 0 162.4270564 8.328466386 SEED 273 LSU_Ribosomal_Proteins Bacteria Protein Metabolism Protein Biosynthesis 1 121 25 131.7870322 95.87157962 26.02645746 SEED 274 Lysine_Biosynthesis Bacteria Amino Acids and Derivatives Branhed-chain amino acids 8 619 208 1054.296257 490.4504776 216.540126 SEED 275 Lysine_Biosynthesis_DAP_Pathway Bacteria Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 22 2719 1411 2899.314707 2154.337397 1468.933259 SEED 276 Lysine_Biosynthesis_DAP_Pathway Eukaryota Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 0 24 32 0 19.0158505 33.31386554 Sargasso 277 Lysine_Biosynthesis_DAP_Pathway_Cyano Bacteria Amino Acids and Derivatives Branhed-chain amino acids 12 2287 1183 1581.444386 1812.052088 1231.571967 SEED 278 Lysine_Biosynthesis_v2 Bacteria Amino Acids and Derivatives Branhed-chain amino acids 0 348 53 0 275.7298323 55.17608981 SEED 279 Mannose-sensitive_hemagglutinin_type_4_pilus Bacteria Virulence Adhesion 0 218 55 0 172.7273087 57.2582064 SEED 280 Mannose_and_fructose__metabolism Bacteria Carbohydrates Monosaccharides 1 541 104 131.7870322 428.6489634 108.270063 SEED 281 mannose_and_GDP-mannose_metabolism Archaea Carbohydrates Monosaccharides 4 49 29 527.1481286 38.82402811 30.19069065 SEED 282 mannose_and_GDP-mannose_metabolism Bacteria Carbohydrates Monosaccharides 6 1983 654 790.7221929 1571.184648 680.852127 SEED 283 mannose_and_GDP-mannose_metabolism Eukaryota Carbohydrates Monosaccharides 0 117 15 0 92.70227121 15.61587447 SEED 284 mano_trial_synthesis Archaea Unclassified Empty 0 6 0 0 4.753962626 0 SEED 285 mano_trial_synthesis Bacteria Unclassified Empty 0 103 80 0 81.60969175 83.28466386 Sargasso 286 mechanosensitive_channels Bacteria Unclassified Empty 0 86 9 0 68.14013097 9.369524684 SEED 287 Menaquinone_and_Phylloquinone_Biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 10 44 10 1317.870322 34.86239259 10.41058298 SEED 288 Menaquinone_and_Phylloquinone_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 7 1952 749 922.5092251 1546.622508 779.7526654 SEED 289 Menaquinone_and_Phylloquinone_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 0 159 44 0 125.9800096 45.80656512 SEED 290 Menaquinone_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 7 426 179 922.5092251 337.5313464 186.3494354 SEED 291 Methanogenesis Archaea Carbohydrates Methanogenesis 0 331 84 0 262.2602715 87.44889705 SEED 292 methanopterin_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 0 287 126 0 227.3978789 131.1733456 SEED 293 Methionine_Biosynthesis Bacteria Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 28 2820 1549 3690.0369 2234.362434 1612.599304 SEED 294 Methionine_Biosynthesis Eukaryota Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 0 75 29 0 59.42453282 30.19069065 SEED 295 Methionine_Metabolism Bacteria Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 13 1955 1394 1713.231418 1548.999489 1451.235268 Sargasso 296 Methionine_Metabolism Eukaryota Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 0 102 32 0 80.81736464 33.31386554 SEED 297 Methylcitrate_cycle Archaea Carbohydrates Organic acids 20 85 42 2635.740643 67.34780387 43.72444853 SEED 298 Methylcitrate_cycle Bacteria Carbohydrates Organic acids 3 810 1137 395.3610965 641.7849545 1183.683285 Sargasso 299 Methylcitrate_cycle Eukaryota Carbohydrates Organic acids 0 55 8 0 43.57799074 8.328466386 SEED 300 mycolic_acid_synthesis Bacteria Cell Wall and Capsule Cell wall of Mycobacteria 2 784 119 263.5740643 621.1844498 123.8859375 SEED 301 N-Acetyl-D-Glucosamine_Utilization Bacteria Carbohydrates Aminosugars 4 3242 653 527.1481286 2568.724472 679.8110687 SEED 302 N-Acetyl-D-Glucosamine_Utilization Eukaryota Carbohydrates Aminosugars 0 56 6 0 44.37031784 6.246349789 SEED 303 N-linked_Glycosylation_in_Bacteria Bacteria Cell Wall and Capsule Glycosylation 6 805 1021 790.7221929 637.823319 1062.920522 Sargasso 304 NAD_and_NADP_cofactor_biosynthesis_global Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP 16 204 58 2108.592514 161.6347293 60.3813813 SEED 305 NAD_and_NADP_cofactor_biosynthesis_global Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP 13 2981 1642 1713.231418 2361.927098 1709.417726 SEED 306 NAD_and_NADP_cofactor_biosynthesis_global Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP 0 314 63 0 248.7907108 65.58667279 SEED 307 NADH-quinone_oxidoreductase_(Complex__I) Archaea Oxidative Phosphorylation Respiration 0 5 0 0 3.961635522 0 SEED 308 NADH-quinone_oxidoreductase_(Complex__I) Bacteria Oxidative Phosphorylation Respiration 4 214 370 527.1481286 169.5580003 385.1915703 Sargasso 309 NADH-quinone_oxidoreductase_(Complex__I) Eukaryota Oxidative Phosphorylation Respiration 0 30 3 0 23.76981313 3.123174895 SEED 310 NADH-ubiquinone_oxidoreductase_(Complex_I) Archaea Oxidative Phosphorylation Respiration 17 142 41 2240.379547 112.5104488 42.68339023 SEED 311 NADH-ubiquinone_oxidoreductase_(Complex_I) Bacteria Oxidative Phosphorylation Respiration 37 2663 2472 4876.12019 2109.967079 2573.496113 Sargasso 312 NADH-ubiquinone_oxidoreductase_(Complex_I) Eukaryota Oxidative Phosphorylation Respiration 1 120 81 131.7870322 95.07925252 84.32572216 Sargasso 313 Nitrate,nitrite,_nitrous_oxide_reductases Archaea Nitrogen Metabolism Empty 7 89 7 922.5092251 70.51711228 7.287408088 SEED 314 Nitrate,nitrite,_nitrous_oxide_reductases Bacteria Nitrogen Metabolism Empty 2 1703 172 263.5740643 1349.333059 179.0620273 SEED 315 Nitrate,nitrite,_nitrous_oxide_reductases Eukaryota Nitrogen Metabolism Empty 0 3 2 0 2.376981313 2.082116596 Sargasso 316 Nitrate_and_Nitrite_Reduction Bacteria Nitrogen Metabolism Empty 0 325 47 0 257.5063089 48.92974002 SEED 317 Nitrate_Assimilation Archaea Nitrogen Metabolism Empty 5 80 81 658.9351608 63.38616835 84.32572216 Sargasso 318 Nitrate_Assimilation Bacteria Nitrogen Metabolism Empty 0 488 79 0 386.6556269 82.24360556 SEED 319 Nitrite_Reduction Bacteria Nitrogen Metabolism Empty 0 628 94 0 497.5814215 97.85948003 SEED 320 Nitrite_Reduction Eukaryota Nitrogen Metabolism Empty 0 3 2 0 2.376981313 2.082116596 Sargasso 321 nitrogen_fixation Archaea Nitrogen Metabolism Empty 1 29 0 131.7870322 22.97748603 0 SEED 322 nitrogen_fixation Bacteria Nitrogen Metabolism Empty 7 979 622 922.5092251 775.6882351 647.5382615 Sargasso 323 Nitrosative_stress Archaea Nitrogen Metabolism Empty 0 7 0 0 5.54628973 0 SEED 324 Nitrosative_stress Bacteria Nitrogen Metabolism Empty 3 996 187 395.3610965 789.1577959 194.6779018 SEED 325 Oligopeptide_ABC_transporters Bacteria Membrane Transport ABC transporters 12 1918 947 1581.444386 1519.683386 985.8822084 SEED 326 Oxidative_Phosphorylation Bacteria Oxidative Phosphorylation Respiration 13 645 305 1713.231418 511.0509823 317.522781 SEED 327 P-type_ATPase_transporter_potassium_(TC_3.A.3.7.1) Archaea Unclassified Empty 5 9 0 658.9351608 7.130943939 0 SEED 328 P-type_ATPase_transporter_potassium_(TC_3.A.3.7.1) Bacteria Unclassified Empty 3 414 19 395.3610965 328.0234212 19.78010767 SEED 329 P_uptake_(cyanobacteria) Bacteria Phosphorus Metabolism Empty 9 1097 463 1186.083289 869.1828334 482.0099921 SEED 330 Pentose_phosphate_pathway Bacteria Carbohydrates Central carbohydrate metabolism 0 176 46 0 139.4495704 47.88868172 SEED 331 Pentose_phosphate_pathway_(SG) Archaea Carbohydrates Central carbohydrate metabolism 4 50 28 527.1481286 39.61635522 29.14963235 SEED 332 Pentose_phosphate_pathway_(SG) Bacteria Carbohydrates Central carbohydrate metabolism 26 2394 1487 3426.462836 1896.831088 1548.053689 SEED 333 Pentose_phosphate_pathway_(SG) Eukaryota Carbohydrates Central carbohydrate metabolism 0 73 11 0 57.83987862 11.45164128 SEED 334 Peptidoglycan_Biosynthesis Archaea Cell Wall and Capsule Peptidoglycan biosynthesis 5 67 54 658.9351608 53.08591599 56.2171481 Sargasso 335 Peptidoglycan_Biosynthesis Bacteria Cell Wall and Capsule Peptidoglycan biosynthesis 20 2986 2533 2635.740643 2365.888734 2637.000669 Sargasso 336 Peptidoglycan_Biosynthesis Eukaryota Cell Wall and Capsule Peptidoglycan biosynthesis 0 40 12 0 31.69308417 12.49269958 SEED 337 Peptidoglycan_from_UDP-N-acetylmuramate Bacteria Cell Wall and Capsule Peptidoglycan biosynthesis 1 535 115 131.7870322 423.8950008 119.7217043 SEED 338 Peptidoglycan_from_UDP-N-acetylmuramate Eukaryota Cell Wall and Capsule Peptidoglycan biosynthesis 0 11 3 0 8.715598148 3.123174895 SEED 339 peptidoglycan_synthesis Bacteria Cell Wall and Capsule Peptidoglycan biosynthesis 0 98 7 0 77.64805622 7.287408088 SEED 340 Phenylalanine_synthesis Bacteria Amino Acids and Derivatives Aromatic amino acids and derivatives 4 370 181 527.1481286 293.1610286 188.431552 SEED 341 Phenylalanine_synthesis Eukaryota Amino Acids and Derivatives Aromatic amino acids and derivatives 0 20 12 0 15.84654209 12.49269958 SEED 342 Photosystem_I Bacteria Photosynthesis Oxygenic photosynthesis 0 200 357 0 158.4654209 371.6578125 Sargasso 343 Photosystem_I Eukaryota Photosynthesis Oxygenic photosynthesis 0 83 30 0 65.76314966 31.23174895 SEED 344 Photosystem_II Bacteria Photosynthesis Oxygenic photosynthesis 0 241 474 0 190.9508321 493.4616334 Sargasso 345 Photosystem_II Eukaryota Photosynthesis Oxygenic photosynthesis 0 47 11 0 37.2393739 11.45164128 SEED 346 Phycobilisome Bacteria Photosynthesis Oxygenic photosynthesis 0 250 126 0 198.0817761 131.1733456 SEED 347 Phytobilin_Biosynthesis Bacteria Unclassified Empty 0 127 107 0 100.6255422 111.3932379 Sargasso 348 Phytobilin_Biosynthesis Eukaryota Unclassified Empty 0 6 0 0 4.753962626 0 SEED 349 Phytochromes Bacteria Cell signaling Signal transduction in prokaryota 20 1256 300 2635.740643 995.162843 312.3174895 SEED 350 Phytochromes Eukaryota Cell signaling Signal transduction in prokaryota 0 3 1 0 2.376981313 1.041058298 SEED 351 Plastoquinone_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 0 34 37 0 26.93912155 38.51915703 Sargasso 352 Plastoquinone_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 0 2 3 0 1.584654209 3.123174895 Sargasso 353 Polyamine Metabolism Bacteria Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 1 0 0 0.792327104 0 SEED 354 Polyamine_Metabolism Archaea Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 36 9 0 28.52377576 9.369524684 SEED 355 Polyamine_Metabolism Bacteria Amino Acids and Derivatives Arginine; urea cycle, polyamines 14 2367 702 1845.01845 1875.438256 730.8229254 SEED 356 Polyamine_Metabolism Eukaryota Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 32 3 0 25.35446734 3.123174895 SEED 357 polyisoprenoid_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 18 154 121 2372.166579 122.0183741 125.9680541 Sargasso 358 polyisoprenoid_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 12 1968 1481 1581.444386 1559.299741 1541.80734 Sargasso 359 polyisoprenoid_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 0 171 14 0 135.4879348 14.57481618 SEED 360 polyprenyl_synthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Isoprenoids 2 150 14 263.5740643 118.8490656 14.57481618 SEED 361 Porphyrin,_Heme,_and_Siroheme_Biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 20 209 95 2635.740643 165.5963648 98.90053833 SEED 362 Porphyrin,_Heme,_and_Siroheme_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 28 3710 2346 3690.0369 2939.533557 2442.322768 Sargasso 363 Porphyrin,_Heme,_and_Siroheme_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles 0 173 43 0 137.072589 44.76550682 SEED 364 ppGpp_biosynthesis Bacteria Stress response Starvation response 0 36 7 0 28.52377576 7.287408088 SEED 365 PPP-MK Bacteria Unclassified Empty 0 153 18 0 121.226047 18.73904937 SEED 366 Proline_Synthesis Archaea Amino Acids and Derivatives Proline and 4-hydroxyproline 0 22 6 0 17.4311963 6.246349789 SEED 367 Proline_Synthesis Bacteria Amino Acids and Derivatives Proline and 4-hydroxyproline 6 690 476 790.7221929 546.705702 495.54375 Sargasso 368 Proline_Synthesis Eukaryota Amino Acids and Derivatives Proline and 4-hydroxyproline 0 28 7 0 22.18515892 7.287408088 SEED 369 Propionate_Catabolism_via_2-Methylcitrate_Cycle Archaea Degradation/Utilization/Assimilation of Various Compounds Empty 9 22 14 1186.083289 17.4311963 14.57481618 Sargasso 370 Propionate_Catabolism_via_2-Methylcitrate_Cycle Bacteria Degradation/Utilization/Assimilation of Various Compounds Empty 0 392 243 0 310.5922249 252.9771665 SEED 371 Proteasome_archaeal Archaea Protein Metabolism Protein Degradation 1 93 29 131.7870322 73.6864207 30.19069065 SEED 372 Proteasome_archaeal Bacteria Protein Metabolism Protein Degradation 2 24 6 263.5740643 19.0158505 6.246349789 SEED 373 Proteasome_eukaryotic Eukaryota Protein Metabolism Protein Degradation 0 651 48 0 515.8049449 49.97079831 SEED 374 Pterin_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 0 6 0 0 4.753962626 0 SEED 375 Pterin_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 4 367 148 527.1481286 290.7840473 154.0766281 SEED 376 Pterin_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 0 20 8 0 15.84654209 8.328466386 SEED 377 purine_conversions Archaea Nucleosides and Nucleotides Purines 19 165 56 2503.953611 130.7339722 58.2992647 SEED 378 purine_conversions Bacteria Nucleosides and Nucleotides Purines 30 4221 3830 3953.610965 3344.412707 3987.253282 Sargasso 379 purine_conversions Eukaryota Nucleosides and Nucleotides Purines 0 396 70 0 313.7615333 72.87408088 SEED 380 purine_conversions_2 Archaea Nucleosides and Nucleotides Purines 8 106 9 1054.296257 83.98667306 9.369524684 SEED 381 purine_conversions_2 Bacteria Nucleosides and Nucleotides Purines 16 3179 2053 2108.592514 2518.807865 2137.292686 Sargasso 382 purine_conversions_2 Eukaryota Nucleosides and Nucleotides Purines 1 135 14 131.7870322 106.9641591 14.57481618 SEED 383 Putrescine_and_4-aminobutyrate_degradation Bacteria Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 55 52 0 43.57799074 54.13503151 Sargasso 384 Putrescine_and_4-aminobutyrate_degradation Eukaryota Amino Acids and Derivatives Arginine; urea cycle, polyamines 0 2 22 0 1.584654209 22.90328256 Sargasso 385 pyrimidine_conversions Archaea Nucleosides and Nucleotides Pyrimidines 27 245 54 3558.249868 194.1201406 56.2171481 SEED 386 pyrimidine_conversions Bacteria Nucleosides and Nucleotides Pyrimidines 23 4583 2879 3031.10174 3631.235119 2997.206841 SEED 387 pyrimidine_conversions Eukaryota Nucleosides and Nucleotides Pyrimidines 1 314 40 131.7870322 248.7907108 41.64233193 SEED 388 Pyruvate,_PEP_and_Acetyl-CoA_(anaplerotic_reactions) Bacteria Carbohydrates Central carbohydrate metabolism 2 793 747 263.5740643 628.3153937 777.6705488 Sargasso 389 Pyruvate,_PEP_and_Acetyl-CoA_(anaplerotic_reactions) Eukaryota Carbohydrates Central carbohydrate metabolism 0 7 11 0 5.54628973 11.45164128 Sargasso 390 Pyruvate_Alanine_Serine_Interconversions Bacteria Carbohydrates Central carbohydrate metabolism 3 1828 789 395.3610965 1448.373947 821.3949973 SEED 391 Pyruvate_Alanine_Serine_Interconversions Eukaryota Carbohydrates Central carbohydrate metabolism 0 43 5 0 34.07006549 5.205291491 SEED 392 Queuosine Archaea RNA metabolism RNA processing and modification 2 96 31 263.5740643 76.06340201 32.27280724 SEED 393 Queuosine Bacteria RNA metabolism RNA processing and modification 10 1365 807 1317.870322 1081.526497 840.1340467 SEED 394 Queuosine Eukaryota RNA metabolism RNA processing and modification 0 46 10 0 36.4470468 10.41058298 SEED 395 Quinolinate_Biosynthesis_from_Tryptophan Bacteria Secondary metabolism/active compounds Biologically active compounds in metazoan cell defence and differentiation 0 48 48 0 38.03170101 49.97079831 Sargasso 396 Quinolinate_Biosynthesis_from_Tryptophan Eukaryota Secondary metabolism/active compounds Biologically active compounds in metazoan cell defence and differentiation 0 3 2 0 2.376981313 2.082116596 Sargasso 397 Quorum_Sensing:_Autoinducer-2_Synthesis Bacteria Cell signaling Quorum sensing 0 37 30 0 29.31610286 31.23174895 Sargasso 398 Resistance_to_beta-lactam Bacteria Virulence Resistance to Antibiotics 0 51 0 0 40.40868232 0 SEED 399 Resistance_to_fluoroquinolones Archaea Virulence Resistance to Antibiotics 5 21 28 658.9351608 16.63886919 29.14963235 Sargasso 400 Resistance_to_fluoroquinolones Bacteria Virulence Resistance to Antibiotics 7 1221 1961 922.5092251 967.4313944 2041.515323 Sargasso 401 Resistance_to_fluoroquinolones Eukaryota Virulence Resistance to Antibiotics 0 5 1 0 3.961635522 1.041058298 SEED 402 Riboflavin_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD 2 114 78 263.5740643 90.32528989 81.20254726 Sargasso 403 Riboflavin_metabolism Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD 22 188 71 2899.314707 148.9574956 73.91513917 SEED 404 Riboflavin_metabolism Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD 13 2329 1890 1713.231418 1845.329826 1967.600184 Sargasso 405 Riboflavin_metabolism Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD 0 127 17 0 100.6255422 17.69799107 SEED 406 Ribonucleotide_reduction Archaea Nucleosides and Nucleotides Empty 5 48 42 658.9351608 38.03170101 43.72444853 Sargasso 407 Ribonucleotide_reduction Bacteria Nucleosides and Nucleotides Empty 7 1417 1257 922.5092251 1122.727507 1308.610281 Sargasso 408 Ribonucleotide_reduction Eukaryota Nucleosides and Nucleotides Empty 0 30 108 0 23.76981313 112.4342962 Sargasso 409 Ribosome_LSU_bacterial Bacteria Protein Metabolism Protein Biosynthesis 34 8074 4790 4480.759093 6397.24904 4986.669248 SEED 410 Ribosome_LSU_eukaryotic_and_archaeal Archaea Protein Metabolism Protein Biosynthesis 65 650 149 8566.15709 515.0126178 155.1176864 SEED 411 Ribosome_LSU_eukaryotic_and_archaeal Eukaryota Protein Metabolism Protein Biosynthesis 0 1995 29 0 1580.692573 30.19069065 SEED 412 Ribosome_SSU_bacterial Bacteria Protein Metabolism Protein Biosynthesis 15 4453 2782 1976.805482 3528.232596 2896.224186 SEED 413 Ribosome_SSU_chloroplast Eukaryota Protein Metabolism Protein Biosynthesis 0 40 2 0 31.69308417 2.082116596 SEED 414 Ribosome_SSU_eukaryotic_and_archaeal Archaea Protein Metabolism Protein Biosynthesis 61 481 119 8039.008962 381.1093372 123.8859375 SEED 415 Ribosome_SSU_eukaryotic_and_archaeal Eukaryota Protein Metabolism Protein Biosynthesis 0 1068 22 0 846.2053474 22.90328256 SEED 416 RNA_polymerase_archaeal Archaea RNA metabolism Empty 7 206 79 922.5092251 163.2193835 82.24360556 SEED 417 RNA_polymerase_archaeal_initiation_factors Archaea RNA metabolism Empty 11 91 79 1449.657354 72.10176649 82.24360556 Sargasso 418 RNA_polymerase_bacterial Bacteria RNA metabolism Empty 5 1094 2457 658.9351608 866.8058521 2557.880239 Sargasso 419 RNA_polymerase_I Eukaryota RNA metabolism Empty 0 174 15 0 137.8649162 15.61587447 SEED 420 RNA_polymerase_II Eukaryota RNA metabolism Empty 0 214 161 0 169.5580003 167.610386 Sargasso 421 RNA_polymerase_II_initiation_factors Eukaryota RNA metabolism Empty 1 517 20 131.7870322 409.6331129 20.82116596 SEED 422 RNA_polymerase_III Eukaryota RNA metabolism Empty 0 262 20 0 207.5897013 20.82116596 SEED 423 serine_biosynthesis Archaea Amino Acids and Derivatives Alanine, serine, and glycine 13 163 244 1713.231418 129.149318 254.0182248 Sargasso 424 serine_biosynthesis Bacteria Amino Acids and Derivatives Alanine, serine, and glycine 7 1423 1173 922.5092251 1127.481469 1221.161384 Sargasso 425 serine_biosynthesis Eukaryota Amino Acids and Derivatives Alanine, serine, and glycine 0 52 11 0 41.20100942 11.45164128 SEED 426 Serine_Biosynthesis Archaea Amino Acids and Derivatives Alanine, serine, and glycine 13 166 244 1713.231418 131.5262993 254.0182248 Sargasso 427 Serine_Biosynthesis Bacteria Amino Acids and Derivatives Alanine, serine, and glycine 7 1545 1257 922.5092251 1224.145376 1308.610281 Sargasso 428 Serine_Biosynthesis Eukaryota Amino Acids and Derivatives Alanine, serine, and glycine 0 52 11 0 41.20100942 11.45164128 SEED 429 Serine_synthesis Archaea Amino Acids and Derivatives Alanine, serine, and glycine 0 12 52 0 9.507925252 54.13503151 Sargasso 430 Serine_synthesis Bacteria Amino Acids and Derivatives Alanine, serine, and glycine 0 264 246 0 209.1743555 256.1003414 Sargasso 431 Serine_synthesis Eukaryota Amino Acids and Derivatives Alanine, serine, and glycine 0 4 1 0 3.169308417 1.041058298 SEED 432 Soluble_cytochromes_and_functionally_related_electron_carriers Archaea Oxidative Phosphorylation Respiration 6 137 11 790.7221929 108.5488133 11.45164128 SEED 433 Soluble_cytochromes_and_functionally_related_electron_carriers Bacteria Oxidative Phosphorylation Respiration 9 1383 568 1186.083289 1095.788385 591.3211134 SEED 434 Soluble_cytochromes_and_functionally_related_electron_carriers Eukaryota Oxidative Phosphorylation Respiration 0 18 1 0 14.26188788 1.041058298 SEED 435 Sphingolipid_biosynthesis Bacteria Fatty Acids and Lipids Phospholipids 0 26 3 0 20.60050471 3.123174895 SEED 436 Sphingolipid_biosynthesis Eukaryota Fatty Acids and Lipids Phospholipids 0 147 7 0 116.4720843 7.287408088 SEED 437 SSU_Ribosomal_Proteins Archaea Protein Metabolism Protein Biosynthesis 6 64 22 790.7221929 50.70893468 22.90328256 SEED 438 SSU_Ribosomal_Proteins Bacteria Protein Metabolism Protein Biosynthesis 16 4496 2565 2108.592514 3562.302661 2670.314535 SEED 439 SSU_Ribosomal_Proteins Eukaryota Protein Metabolism Protein Biosynthesis 0 153 2 0 121.226047 2.082116596 SEED 440 Succinate__dehydrogenase Archaea Oxidative Phosphorylation Respiration 15 62 44 1976.805482 49.12428047 45.80656512 Sargasso 441 Succinate__dehydrogenase Bacteria Oxidative Phosphorylation Respiration 4 1060 917 527.1481286 839.8667306 954.6504595 Sargasso 442 Succinate__dehydrogenase Eukaryota Oxidative Phosphorylation Respiration 0 51 5 0 40.40868232 5.205291491 SEED 443 Sucrose_Metabolism Archaea Carbohydrates Di- and oligosaccharides 0 20 5 0 15.84654209 5.205291491 SEED 444 Sucrose_Metabolism Bacteria Carbohydrates Di- and oligosaccharides 19 2230 930 2503.953611 1766.889443 968.1842173 SEED 445 Sucrose_Metabolism Eukaryota Carbohydrates Di- and oligosaccharides 0 230 64 0 182.235234 66.62773109 SEED 446 Sulfate_assimilation Archaea Sulfur Metabolism Inorganic sulfur assibilation 1 43 23 131.7870322 34.07006549 23.94434086 SEED 447 Sulfate_assimilation Bacteria Sulfur Metabolism Inorganic sulfur assibilation 3 1055 792 395.3610965 835.9050951 824.5181722 Sargasso 448 Sulfate_assimilation Eukaryota Sulfur Metabolism Inorganic sulfur assibilation 0 98 40 0 77.64805622 41.64233193 SEED 449 Sulfur_Metabolism Bacteria Sulfur Metabolism Inorganic sulfur assibilation 1 72 8 131.7870322 57.04755151 8.328466386 SEED 450 superpathway_of_fucose_and_rhamnose_degradation_ Archaea Carbohydrates Monosaccharides 7 25 0 922.5092251 19.80817761 0 SEED 451 superpathway_of_fucose_and_rhamnose_degradation_ Bacteria Carbohydrates Monosaccharides 0 595 211 0 471.4346271 219.6633009 SEED 452 superpathway_of_glutamate,_aspartate,_asparagine_biosynthisis Archaea Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 16 186 97 2108.592514 147.3728414 100.9826549 SEED 453 superpathway_of_glutamate,_aspartate,_asparagine_biosynthisis Bacteria Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 27 3062 2703 3558.249868 2426.105593 2813.98058 Sargasso 454 superpathway_of_glutamate,_aspartate,_asparagine_biosynthisis Eukaryota Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0 198 64 0 156.8807667 66.62773109 SEED 455 superpathway_of_hexitol_degradation Archaea Carbohydrates Sugar alcohols 0 12 0 0 9.507925252 0 SEED 456 superpathway_of_hexitol_degradation Bacteria Carbohydrates Sugar alcohols 0 871 500 0 690.1169079 520.5291491 SEED 457 superpathway_of_hexitol_degradation Eukaryota Carbohydrates Sugar alcohols 0 103 33 0 81.60969175 34.35492384 SEED 458 superpathway_of_ribose_and_deoxyribose_phosphate_metabolism Archaea Nucleosides and Nucleotides Empty 10 82 19 1317.870322 64.97082255 19.78010767 SEED 459 superpathway_of_ribose_and_deoxyribose_phosphate_metabolism Bacteria Nucleosides and Nucleotides Empty 9 2108 1435 1186.083289 1670.225536 1493.918658 Sargasso 460 superpathway_of_ribose_and_deoxyribose_phosphate_metabolism Eukaryota Nucleosides and Nucleotides Empty 0 92 7 0 72.8940936 7.287408088 SEED 461 TCA_Cycle Bacteria Carbohydrates Central carbohydrate metabolism 28 2005 1390 3690.0369 1588.615844 1447.071035 Sargasso 462 Terminal_cytochrome__oxidases Archaea Oxidative Phosphorylation Respiration 6 22 0 790.7221929 17.4311963 0 SEED 463 Terminal_cytochrome__oxidases Bacteria Oxidative Phosphorylation Respiration 7 1740 373 922.5092251 1378.649162 388.3147452 SEED 464 Terminal_cytochrome__oxidases Eukaryota Oxidative Phosphorylation Respiration 0 12 2 0 9.507925252 2.082116596 SEED 465 Terminal_cytochrome_C_oxidases Archaea Oxidative Phosphorylation Respiration 1 7 0 131.7870322 5.54628973 0 SEED 466 Terminal_cytochrome_C_oxidases Bacteria Oxidative Phosphorylation Respiration 9 1193 1775 1186.083289 945.2462355 1847.878479 Sargasso 467 Terminal_cytochrome_C_oxidases Eukaryota Oxidative Phosphorylation Respiration 0 48 21 0 38.03170101 21.86222426 SEED 468 Thermotoga_Alanine_Biosynthesis Bacteria Amino Acids and Derivatives Alanine, serine, and glycine 6 985 337 790.7221929 780.4421978 350.8366465 SEED 469 Thermotoga_Alanine_Biosynthesis Eukaryota Amino Acids and Derivatives Alanine, serine, and glycine 0 21 6 0 16.63886919 6.246349789 SEED 470 Thiamin_biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Thiamine and thiamine pyrophosphate 22 333 82 2899.314707 263.8449257 85.36678045 SEED 471 Thiamin_biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Thiamine and thiamine pyrophosphate 27 3397 1111 3558.249868 2691.535173 1156.615769 SEED 472 Thiamin_biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Thiamine and thiamine pyrophosphate 0 74 12 0 58.63220572 12.49269958 SEED 473 Thiamine_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Thiamine and thiamine pyrophosphate 1 40 9 131.7870322 31.69308417 9.369524684 SEED 474 Threonine_synthesis Archaea Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 19 150 60 2503.953611 118.8490656 62.46349789 SEED 475 Threonine_synthesis Bacteria Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 8 1070 952 1054.296257 847.7900016 991.0874999 Sargasso 476 Threonine_synthesis Eukaryota Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 0 33 19 0 26.14679444 19.78010767 SEED 477 Threonine_to_Isoleucine Archaea Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 3 98 120 395.3610965 77.64805622 124.9269958 Sargasso 478 Threonine_to_Isoleucine Bacteria Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 23 1976 2507 3031.10174 1565.638358 2609.933154 Sargasso 479 Threonine_to_Isoleucine Eukaryota Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine 0 60 23 0 47.53962626 23.94434086 SEED 480 TNF_pathway Eukaryota Unclassified Empty 0 37 1 0 29.31610286 1.041058298 SEED 481 Tocopherol_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Tocopherol 0 54 38 0 42.78566363 39.56021533 Sargasso 482 Tocopherol_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Tocopherol 0 2 4 0 1.584654209 4.164233193 Sargasso 483 Transcription_factors_bacterial Bacteria RNA metabolism Empty 14 2027 2059 1845.01845 1606.04704 2143.539036 Sargasso 484 Transcription_factors_cyanobacterial_RpoD-like_sigma_factors Bacteria RNA metabolism Empty 0 93 151 0 73.6864207 157.199803 Sargasso 485 Translation_elongation_factors_eukaryotic_and_archaeal Archaea Protein Metabolism Protein Biosynthesis 13 98 41 1713.231418 77.64805622 42.68339023 SEED 486 Translation_elongation_factors_eukaryotic_and_archaeal Eukaryota Protein Metabolism Protein Biosynthesis 0 286 32 0 226.6055518 33.31386554 SEED 487 Translation_factors_bacterial Bacteria Protein Metabolism Protein Biosynthesis 35 4594 3997 4612.546125 3639.950717 4161.110018 Sargasso 488 Translation_initiation_factors_eukaryotic_and_archaeal Archaea Protein Metabolism Protein Biosynthesis 29 279 103 3821.823933 221.0592621 107.2290047 SEED 489 Translation_initiation_factors_eukaryotic_and_archaeal Eukaryota Protein Metabolism Protein Biosynthesis 1 790 81 131.7870322 625.9384124 84.32572216 SEED 490 Trehalose_biosynthesis Archaea Carbohydrates Di- and oligosaccharides 8 25 9 1054.296257 19.80817761 9.369524684 SEED 491 Trehalose_biosynthesis Bacteria Carbohydrates Di- and oligosaccharides 11 1468 420 1449.657354 1163.136189 437.2444853 SEED 492 Trehalose_biosynthesis Eukaryota Carbohydrates Di- and oligosaccharides 0 193 50 0 152.9191311 52.05291491 SEED 493 Tricarballylate_Utilization Bacteria Degradation/Utilization/Assimilation of Various Compounds Empty 2 193 25 263.5740643 152.9191311 26.02645746 SEED 494 tRNA_aminoacylation Archaea RNA metabolism Empty 38 542 286 5007.907222 429.4412905 297.7426733 SEED 495 tRNA_aminoacylation Bacteria RNA metabolism Empty 33 4177 5563 4348.972061 3309.550315 5791.407313 Sargasso 496 tRNA_aminoacylation Eukaryota RNA metabolism Empty 0 181 66 0 143.4112059 68.70984768 SEED 497 tRNA_processing Archaea RNA metabolism Empty 18 208 60 2372.166579 164.8040377 62.46349789 SEED 498 tRNA_processing Bacteria RNA metabolism Empty 18 2640 1859 2372.166579 2091.743555 1935.327376 Sargasso 499 tRNA_processing Eukaryota RNA metabolism Empty 0 126 19 0 99.83321514 19.78010767 SEED 500 tRNA_splicing Eukaryota RNA metabolism Empty 0 43 1 0 34.07006549 1.041058298 SEED 501 Trp_Synthesis Archaea Amino Acids and Derivatives Aromatic amino acids and derivatives 28 180 110 3690.0369 142.6188788 114.5164128 SEED 502 Trp_Synthesis Bacteria Amino Acids and Derivatives Aromatic amino acids and derivatives 22 2732 2194 2899.314707 2164.637649 2284.081906 Sargasso 503 Trp_Synthesis Eukaryota Amino Acids and Derivatives Aromatic amino acids and derivatives 0 56 6 0 44.37031784 6.246349789 SEED 504 TTSS_chaperones Bacteria Virulence Secretion 0 33 0 0 26.14679444 0 SEED 505 TTSS_effectors Bacteria Virulence Secretion 0 54 0 0 42.78566363 0 SEED 506 TTSS_regulators Bacteria Virulence Secretion 0 46 0 0 36.4470468 0 SEED 507 TTSS_translocators Bacteria Virulence Secretion 0 22 0 0 17.4311963 0 SEED 508 TTSS_transporters Bacteria Virulence Secretion 0 84 0 0 66.55547676 0 SEED 509 Type_II_secretion_system Bacteria Protein Metabolism Protein Export and Secretion 10 776 446 1317.870322 614.845833 464.312001 SEED 510 Type_III_secretion_system Bacteria Protein Metabolism Protein Export and Secretion 0 1105 15 0 875.5214503 15.61587447 SEED 511 Type_IV_secretion_system Bacteria Protein Metabolism Protein Export and Secretion 0 233 22 0 184.6122153 22.90328256 SEED 512 Tyrosine_synthesis Bacteria Amino Acids and Derivatives Aromatic amino acids and derivatives 4 416 208 527.1481286 329.6080754 216.540126 SEED 513 Tyrosine_synthesis Eukaryota Amino Acids and Derivatives Aromatic amino acids and derivatives 0 32 10 0 25.35446734 10.41058298 SEED 514 Ubiquinone_Biosynthesis Archaea Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 16 56 41 2108.592514 44.37031784 42.68339023 Sargasso 515 Ubiquinone_Biosynthesis Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 8 1339 730 1054.296257 1060.925993 759.9725577 SEED 516 Ubiquinone_Biosynthesis Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 0 215 56 0 170.3503274 58.2992647 SEED 517 Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes Bacteria Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 5 315 500 658.9351608 249.5830379 520.5291491 Sargasso 518 Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes Eukaryota Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors 0 40 9 0 31.69308417 9.369524684 SEED 519 UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis Archaea Carbohydrates Aminosugars 6 60 46 790.7221929 47.53962626 47.88868172 Sargasso 520 UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis Bacteria Carbohydrates Aminosugars 14 1980 1934 1845.01845 1568.807667 2013.406749 Sargasso 521 UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis Eukaryota Carbohydrates Aminosugars 0 92 15 0 72.8940936 15.61587447 SEED 522 UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis_NMPDR Bacteria Carbohydrates Aminosugars 17 1979 2154 2240.379547 1568.015339 2242.439574 Sargasso 523 V-Type_ATP_synthaase Archaea Oxidative Phosphorylation ATP synthases 17 179 33 2240.379547 141.8265517 34.35492384 SEED 524 V-Type_ATP_synthaase Bacteria Oxidative Phosphorylation ATP synthases 1 177 2 131.7870322 140.2418975 2.082116596 SEED 525 Valine_Biosynthesis Bacteria Amino Acids and Derivatives Branhed-chain amino acids 0 71 88 0 56.25522441 91.61313024 Sargasso 526 Valine_Synthesis Archaea Amino Acids and Derivatives Branhed-chain amino acids 2 93 112 263.5740643 73.6864207 116.5985294 Sargasso 527 Valine_Synthesis Bacteria Amino Acids and Derivatives Branhed-chain amino acids 14 687 1007 1845.01845 544.3287207 1048.345706 Sargasso 528 Vibrio_Experimental_Type_III_secretion_system_ Bacteria Virulence Empty 0 360 44 0 285.2377576 45.80656512 SEED 529 Xanthine_to_Glycine Bacteria Unclassified Empty 6 588 393 790.7221929 465.8883373 409.1359112 Sargasso